ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet59d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRPE_BACPU (P18267) Anthranilate synthase component 1 (EC 4.1.3.... 30 2.1
2Y363_BUCAI (P57444) Hypothetical UPF0020/UPF0064 protein BU363 29 2.7
3PSB1_SYNY3 (P07826) Photosystem Q(B) protein (32 kDa thylakoid m... 28 4.7
4CBIT_THEVO (Q97A64) Probable cobalt-precorrin-6Y C(15)-methyltra... 28 6.1
5MGR2_RAT (P31421) Metabotropic glutamate receptor 2 precursor (m... 28 6.1
6MGR2_HUMAN (Q14416) Metabotropic glutamate receptor 2 precursor ... 28 6.1

>TRPE_BACPU (P18267) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 513

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 26  YQITPTLMKVNP-TSIGA*GDRHACLPILVAIDDRADAECNLQSLRIGLHTTSNKSKKQW 202
           Y + PTL  V P  S     + H CLP ++A D   +    +Q  ++  H T ++     
Sbjct: 126 YDLIPTLTSVRPHRSASTIENAHICLPTMIAFDHETNHVHFIQYTQLTGHETEDEK---- 181

Query: 203 PINIFLEATFQLSTM 247
            I  + E   QL  M
Sbjct: 182 -IRAYKEKQKQLEQM 195



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>Y363_BUCAI (P57444) Hypothetical UPF0020/UPF0064 protein BU363|
          Length = 701

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 122 DRADAECNLQSLRIGLHTTSNKSKKQWPINIFLEATFQLSTMQV 253
           +R   E  L  L + L  T+ K  K W ++IF  +TF L  +Q+
Sbjct: 316 ERYQTENKLVGLYVQLGITAKKYFKNWKLSIFSASTFLLDFLQM 359



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>PSB1_SYNY3 (P07826) Photosystem Q(B) protein (32 kDa thylakoid membrane|
           protein) (Photosystem II protein D1)
          Length = 360

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 239 TTEMSLQEKYLWAIVSSICCWL 174
           TT++ LQE+ LW   S  CCW+
Sbjct: 3   TTQLGLQEQSLW---SRFCCWI 21



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>CBIT_THEVO (Q97A64) Probable cobalt-precorrin-6Y C(15)-methyltransferase|
           [decarboxylating] (EC 2.1.1.-)
          Length = 201

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 149 VNCIRRRPYHQLPLVLADMHAYHP 78
           +N  R  PY  + LVLAD +AY P
Sbjct: 87  INLDRLSPYKNIQLVLADAYAYSP 110



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>MGR2_RAT (P31421) Metabotropic glutamate receptor 2 precursor (mGluR2)|
          Length = 872

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 251 PASWTTEMSLQEKYLWAIVSSICCWLCV 168
           PAS  +E  LQ +        +CCWLC+
Sbjct: 496 PASRCSEPCLQNEVKSVQPGEVCCWLCI 523



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>MGR2_HUMAN (Q14416) Metabotropic glutamate receptor 2 precursor (mGluR2)|
          Length = 872

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 251 PASWTTEMSLQEKYLWAIVSSICCWLCV 168
           PAS  +E  LQ +        +CCWLC+
Sbjct: 496 PASRCSEPCLQNEVKSVQPGEVCCWLCI 523


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,514,998
Number of Sequences: 219361
Number of extensions: 796353
Number of successful extensions: 1649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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