ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet59c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IRS1_DROME (Q9XTN2) Insulin receptor substrate 1 (Protein Chico)... 30 1.2
2RNP2_ARATH (Q6AWV1) Probable ribonuclease P protein subunit 2 (E... 30 1.2
3CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CR... 29 2.7
4CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CR... 29 2.7
5DHH1_YEAST (P39517) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)... 28 4.6
6Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1 28 6.0
7GCSP_SYNEL (Q8DII3) Glycine dehydrogenase [decarboxylating] (EC ... 28 6.0
8AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein 28 7.9
9GLAS_DROVI (Q24732) Protein glass 28 7.9
10AFLR_ASPPA (P43651) Aflatoxin biosynthesis regulatory protein 28 7.9

>IRS1_DROME (Q9XTN2) Insulin receptor substrate 1 (Protein Chico) (dIRS)|
          Length = 968

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 119 KKLKMD---TAVHTQATVSPIHIHKHIHTPRISYPKWHQSSSHPEE 247
           +KLK+    TA    AT +P+H    I T  IS  KW +  S  EE
Sbjct: 663 EKLKLSDYQTAPPLTATAAPVHDLNKISTYNISAEKWREQPSRSEE 708



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>RNP2_ARATH (Q6AWV1) Probable ribonuclease P protein subunit 2 (EC 3.1.26.5)|
          Length = 151

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 181 VYVNWGDCSLGVYRGVHFQFFVSFFCVAHICLKRRIRTEHSMAWL 47
           + VN+G+C LG   G     +V+   +  +C+ R  R EH   WL
Sbjct: 43  ILVNFGECGLGSSLGSFQVKYVN--PITKLCIVRSSREEHRQVWL 85



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>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)|
           (Fragment)
          Length = 353

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 146 HTQATVSPIHIHKHIHTPRISYPKWHQSSSHPEESAARGAEQAMAWQ 286
           H Q      H H H H+   ++P  HQ+S HP       A+ + A Q
Sbjct: 147 HPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPLHTGNQAQVSPATQ 193



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>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)|
          Length = 508

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 146 HTQATVSPIHIHKHIHTPRISYPKWHQSSSHPEESAARGAEQAMAWQ 286
           H Q      H H H H+   ++P  HQ+S HP       A+ + A Q
Sbjct: 302 HPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPLHTGNQAQVSPATQ 348



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>DHH1_YEAST (P39517) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-) (DExD/H-box|
           helicase 1)
          Length = 506

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 148 HPGYSLPNSHTQAHTYPSDQLP 213
           HP + +P SH Q   YP  Q+P
Sbjct: 461 HPQFMVPPSHQQQQAYPPPQMP 482



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>Y34F_DROME (Q9W5D0) Hypothetical protein CG12467 in chromosome 1|
          Length = 1561

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 173 HIHKHIHTPRISYPKWHQSSSH--PEESAARGAEQAMA 280
           H H H H P  S+P+  Q+ +H  P   A+ GA    A
Sbjct: 59  HSHSHPHQPIPSHPQEQQAKNHCSPSHQASGGATAGAA 96



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>GCSP_SYNEL (Q8DII3) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 954

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 141 RYTPRLQSPQFTYTSTYIPLGSATQNGTKAAHTL 242
           RY  RLQ+   + T++ IPLGS T      A  L
Sbjct: 488 RYIHRLQAKDLSLTTSMIPLGSCTMKLNATAEML 521



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>AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein|
          Length = 437

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 148 HPGYSLPNSHTQAHTY 195
           H  YS P++HTQAHT+
Sbjct: 96  HNTYSTPHAHTQAHTH 111



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>GLAS_DROVI (Q24732) Protein glass|
          Length = 598

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 152 QATVS-PIHIHKHIHTPRISYPKWHQSSSHPEESAARGAEQAM 277
           QA++S  +H H+ + +P  S  +  QSS+HP +  ++  +QA+
Sbjct: 179 QASLSYTVHPHQMLISPNGSQQQQSQSSTHPHQLQSQHMQQAL 221



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>AFLR_ASPPA (P43651) Aflatoxin biosynthesis regulatory protein|
          Length = 444

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 148 HPGYSLPNSHTQAHTY 195
           H  YS P++HTQAHT+
Sbjct: 96  HNTYSTPHAHTQAHTH 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,469,859
Number of Sequences: 219361
Number of extensions: 1022828
Number of successful extensions: 2558
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2557
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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