ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet59a11 |
|---|---|
| Clone Library Name | barley_pub |
>USE1_HUMAN (Q9NZ43) USE1-like protein (Hematopoietic stem/progenitor cells| protein MDS032) (Putative MAPK-activating protein PM26) (Protein p31) Length = 259 Score = 31.6 bits (70), Expect = 0.58 Identities = 20/51 (39%), Positives = 26/51 (50%) Frame = +2 Query: 71 LFPGKIHTAHRAASHARMQLSINSRRRRTGNQRPAHRLGTLSAAPEMTVSR 223 L PG++ T R A + + SR R T R + LGT SA PEM V + Sbjct: 90 LAPGRVPTTARERVPATKTVHLQSRARYTSEMR-SELLGTDSAEPEMDVRK 139
>DUS10_MOUSE (Q9ESS0) Dual specificity protein phosphatase 10 (EC 3.1.3.48) (EC| 3.1.3.16) (Mitogen-activated protein kinase phosphatase 5) (MAP kinase phosphatase 5) (MKP-5) Length = 483 Score = 29.6 bits (65), Expect = 2.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 94 STSCCIARTHAAEHQQPTAADGQSTASSQAG 186 STSCC T+ +HQ T A TA++ G Sbjct: 77 STSCCTVATYDKDHQAQTQAIAAGTATTAIG 107
>METK_PROMM (Q7V5A2) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 419 Score = 28.9 bits (63), Expect = 3.8 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +1 Query: 94 STSCCIARTHAAEHQQPTAADGQSTASSQAGHPLG--GAGDDG 216 +TSC + A + Q P A G + A +G PL GAGD G Sbjct: 88 ATSCAVLV--ALDQQSPDIAQGVNEADDHSGDPLDKVGAGDQG 128
>NMDE1_RAT (Q00959) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 28.9 bits (63), Expect = 3.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 15 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 101 +MF++ LI+ FV YFSPV + +++ Sbjct: 560 MMFVMLLIVSAIAVFVFEYFSPVGYNRNL 588
>NMDE1_PANTR (Q5IS45) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 28.9 bits (63), Expect = 3.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 15 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 101 +MF++ LI+ FV YFSPV + +++ Sbjct: 560 MMFVMLLIVSAIAVFVFEYFSPVGYNRNL 588
>NMDE1_MOUSE (P35436) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) Length = 1464 Score = 28.9 bits (63), Expect = 3.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 15 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 101 +MF++ LI+ FV YFSPV + +++ Sbjct: 560 MMFVMLLIVSAIAVFVFEYFSPVGYNRNL 588
>NMDE1_HUMAN (Q12879) Glutamate [NMDA] receptor subunit epsilon 1 precursor| (N-methyl D-aspartate receptor subtype 2A) (NR2A) (NMDAR2A) (hNR2A) Length = 1464 Score = 28.9 bits (63), Expect = 3.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +3 Query: 15 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 101 +MF++ LI+ FV YFSPV + +++ Sbjct: 560 MMFVMLLIVSAIAVFVFEYFSPVGYNRNL 588
>NMDE2_RAT (Q00960) Glutamate [NMDA] receptor subunit epsilon 2 precursor| (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) Length = 1482 Score = 28.5 bits (62), Expect = 4.9 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +3 Query: 3 EIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQ 95 ++ +MF++ LI+ FV YFSPV + + Sbjct: 557 DVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR 587
>NMDE2_MOUSE (Q01097) Glutamate [NMDA] receptor subunit epsilon 2 precursor| (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) Length = 1482 Score = 28.5 bits (62), Expect = 4.9 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +3 Query: 3 EIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQ 95 ++ +MF++ LI+ FV YFSPV + + Sbjct: 557 DVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR 587
>NMDE2_HUMAN (Q13224) Glutamate [NMDA] receptor subunit epsilon 2 precursor| (N-methyl D-aspartate receptor subtype 2B) (NR2B) (NMDAR2B) (N-methyl-D-aspartate receptor subunit 3) (NR3) (hNR3) Length = 1484 Score = 28.5 bits (62), Expect = 4.9 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +3 Query: 3 EIRTVMFLLPLIIYTYGTFVLSYFSPVKFTQ 95 ++ +MF++ LI+ FV YFSPV + + Sbjct: 557 DVWVMMFVMLLIVSAVAVFVFEYFSPVGYNR 587
>ABLM3_HUMAN (O94929) Actin-binding LIM protein 3 (Actin-binding LIM protein| family member 3) (abLIM3) Length = 683 Score = 28.1 bits (61), Expect = 6.4 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -1 Query: 142 AVDAQLH-ACVRCSTMCCVNFTGEKYESTNVPY 47 A+D Q H +C +C T C V TGE VPY Sbjct: 166 ALDKQWHVSCFKCQT-CSVILTGEYISKDGVPY 197
>CCD13_HUMAN (Q8IYE1) Coiled-coil domain-containing protein 13| Length = 715 Score = 28.1 bits (61), Expect = 6.4 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +2 Query: 50 RHIRTLILFPGKIHTAHRAASHARMQL-SINSRRRRTGNQRPAHRLGTLSAAP 205 +H+ + L PGK + RAA + L + N+R TG+++ LS P Sbjct: 600 QHLEKIRLEPGKASASQRAAPRTKTGLPTSNNRHNPTGSEKKDPSFAQLSDVP 652
>ABLM3_MOUSE (Q69ZX8) Actin-binding LIM protein 3 (Actin-binding LIM protein| family member 3) (abLIM3) Length = 682 Score = 28.1 bits (61), Expect = 6.4 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -1 Query: 142 AVDAQLH-ACVRCSTMCCVNFTGEKYESTNVPY 47 A+D Q H +C +C T C V TGE VPY Sbjct: 166 ALDKQWHVSCFKCQT-CSVILTGEYISKDGVPY 197
>NMDE3_HUMAN (Q14957) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1233 Score = 27.7 bits (60), Expect = 8.4 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +3 Query: 15 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 101 +MF++ L + F+ YFSPV + Q++ Sbjct: 558 MMFVMCLTVVAITVFMFEYFSPVSYNQNL 586
>DCNL4_BRARE (Q5RHX6) DCN1-like protein 4 (Defective in cullin neddylation| protein 1-like protein 4) (DCUN1 domain-containing protein 4) Length = 280 Score = 27.7 bits (60), Expect = 8.4 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 8/50 (16%) Frame = +1 Query: 55 HSYSHTFPR*N--------SHSTSCCIARTHAAEHQQPTAADGQSTASSQ 180 H HT R N SH T+CC + ++PTA D S S+ Sbjct: 21 HKIYHTLHRLNLTEDVGPESHGTACCSRAMPPRKKRRPTAGDDLSAKKSR 70
>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1237 Score = 27.7 bits (60), Expect = 8.4 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +3 Query: 15 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 101 +MF++ L + F+ YFSPV + Q++ Sbjct: 558 MMFVMCLTVVAITVFMFEYFSPVSYNQNL 586
>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1239 Score = 27.7 bits (60), Expect = 8.4 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +3 Query: 15 VMFLLPLIIYTYGTFVLSYFSPVKFTQHI 101 +MF++ L + F+ YFSPV + Q++ Sbjct: 558 MMFVMCLTVVAITVFMFEYFSPVSYNQNL 586
>OS9_EMENI (Q5BDB9) Protein OS-9 homolog precursor| Length = 509 Score = 27.7 bits (60), Expect = 8.4 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 5/33 (15%) Frame = +1 Query: 136 QQPTAADGQ-----STASSQAGHPLGGAGDDGE 219 Q+ T GQ T S QAGHP+ +DGE Sbjct: 462 QETTGQPGQPGHQEETESGQAGHPMDDRSEDGE 494 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,143,803 Number of Sequences: 219361 Number of extensions: 564457 Number of successful extensions: 1962 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1896 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1962 length of database: 80,573,946 effective HSP length: 49 effective length of database: 69,825,257 effective search space used: 1675806168 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
