ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet59a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 452 e-124
2gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047... 42 0.77
3emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chr... 40 3.0
4emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in ... 40 3.0
5gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 3.0

>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA)
          Length = 1174

 Score =  452 bits (228), Expect = e-124
 Identities = 234/236 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaagaacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 gaagaacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaac 1096

                                                                        
Query: 61   agaagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 agaagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatca 1036

                                                                        
Query: 121  tacagtacaatacagacgcccccatcttccctatccccggccgtcttcctccggcgatcg 180
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1035 tacagtacaatacagacgcccccatcttccctatctccggccgtcttcctccggcgatcg 976

                                                                    
Query: 181  acgtatacacggacgatccaatgctaccttgcttttgatggacggggactacatgg 236
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  acgtatacacggacggtccaatgctaccttgcttttgatggacggggactacatgg 920



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>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds
          Length = 1785

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 105  tggtccttatttatcatacag 125
            |||||||||||||||||||||
Sbjct: 1462 tggtccttatttatcatacag 1442



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>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains
            part of a novel gene (FLJ30499) and the 3' end of a novel
            gene (FLJ30450), complete sequence
          Length = 41069

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  ctcactggtccttatttatc 119
            ||||||||||||||||||||
Sbjct: 3262 ctcactggtccttatttatc 3243



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>emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in linkage group 11,
             complete sequence
          Length = 111222

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tatttatcatacagtacaat 131
             ||||||||||||||||||||
Sbjct: 36635 tatttatcatacagtacaat 36616



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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    cccggccgtcttcctccggc 175
              ||||||||||||||||||||
Sbjct: 951280 cccggccgtcttcctccggc 951261


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,757,084
Number of Sequences: 3902068
Number of extensions: 1757084
Number of successful extensions: 29385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29372
Number of HSP's gapped (non-prelim): 13
length of query: 236
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 214
effective length of database: 17,147,199,772
effective search space: 3669500751208
effective search space used: 3669500751208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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