ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet58h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 ... 242 2e-61
2emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for ... 139 2e-30
3gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA,... 88 8e-15
4gb|AC129576.11| Mus musculus chromosome 10, clone RP24-343D9, co... 40 1.6
5gb|AC131690.3| Mus musculus BAC clone RP23-386P10 from chromosom... 40 1.6
6emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in ... 40 1.6
7dbj|AB032057.2| Mus musculus CRAD-2 gene for cis-retinol/androge... 40 1.6
8gb|AC131120.4| Mus musculus BAC clone RP24-547N4 from 10, comple... 40 1.6
9emb|AL772173.16| Mouse DNA sequence from clone RP23-163P22 on ch... 40 1.6
10gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 38 6.3
11emb|Z97348.1|PFMAL3P1 Plasmodium falciparum MAL3P1, complete seq... 38 6.3
12emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS... 38 6.3
13gb|AC005957.3| Arabidopsis thaliana chromosome 2 clone T15J14 ma... 38 6.3
14emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in ... 38 6.3
15gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 38 6.3
16gb|AC154317.2| Mus musculus BAC clone RP23-346H4 from chromosome... 38 6.3 
>gb|AF136942.1|AF136942 Hordeum vulgare nicotianamine synthase 2 (nashor2) mRNA, complete cds
          Length = 1346

 Score =  242 bits (122), Expect = 2e-61
 Identities = 131/133 (98%), Gaps = 1/133 (0%)
 Strand = Plus / Minus

                                                                        
Query: 2    taataattatggtaaataatnaagtagccacatccatccatgcatgaggacaaacggatt 61
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 taataattatggtaaataattaagtagccacatccatccatgcatgaggacaaacggatt 1240

                                                                        
Query: 62   attaccatgcatg-atcgatcgcagattaatcgggcaatattaatcggtgggtgaattca 120
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 attaccatgcatgtatcgatcgcagattaatcgggcaatattaatcggtgggtgaattca 1180

                         
Query: 121  tcaccgtgccatg 133
            |||||||||||||
Sbjct: 1179 tcaccgtgccatg 1167
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>emb|AJ784276.1| Hordeum vulgare subsp. vulgare partial mRNA for putative
          nicotianamine synthase (nas gene), 3'UTR
          Length = 206

 Score =  139 bits (70), Expect = 2e-30
 Identities = 72/73 (98%)
 Strand = Plus / Minus

                                                                      
Query: 1  ataataattatggtaaataatnaagtagccacatccatccatgcatgaggacaaacggat 60
          ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ataataattatggtaaataattaagtagccacatccatccatgcatgaggacaaacggat 17

                       
Query: 61 tattaccatgcat 73
          |||||||||||||
Sbjct: 16 tattaccatgcat 4
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>gb|DQ167190.1| Triticum monococcum nicotianamine sythase 3 mRNA, partial cds
          Length = 814

 Score = 87.7 bits (44), Expect = 8e-15
 Identities = 110/130 (84%), Gaps = 14/130 (10%)
 Strand = Plus / Minus

                                                                       
Query: 2   taataattatggtaaataatnaagtagccac----atccatccatgcatgaggacaaacg 57
           |||||||||||||||||||    ||||||||    |||||||||||||||||||||||| 
Sbjct: 559 taataattatggtaaataa----gtagccacatccatccatccatgcatgaggacaaacc 504

                                                                       
Query: 58  gattattaccatgcatg-----atcgatcgcagattaatcgggc-aatattaatcggtgg 111
            ||||||||||||||||     |||| |||  |||||||||||| |||||||||||||||
Sbjct: 503 aattattaccatgcatgtttgtatcggtcggtgattaatcgggcaaatattaatcggtgg 444

                     
Query: 112 gtgaattcat 121
           |||| |||||
Sbjct: 443 gtgagttcat 434
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>gb|AC129576.11| Mus musculus chromosome 10, clone RP24-343D9, complete sequence
          Length = 136276

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     catccatccatgcatgagga 51
              ||||||||||||||||||||
Sbjct: 129020 catccatccatgcatgagga 129039
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>gb|AC131690.3| Mus musculus BAC clone RP23-386P10 from chromosome 10, complete sequence
          Length = 208306

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     catccatccatgcatgagga 51
              ||||||||||||||||||||
Sbjct: 128396 catccatccatgcatgagga 128377



 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   catccatccatgcatgagga 51
            ||||||||||||||||||||
Sbjct: 8229 catccatccatgcatgagga 8248
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>emb|CR352305.6| Zebrafish DNA sequence from clone CH211-95N4 in linkage group 17,
             complete sequence
          Length = 155030

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     taataattatggtaaataat 21
             ||||||||||||||||||||
Sbjct: 46243 taataattatggtaaataat 46262
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>dbj|AB032057.2| Mus musculus CRAD-2 gene for cis-retinol/androgen dehydrogenase type
            2, complete cds
          Length = 10629

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   catccatccatgcatgagga 51
            ||||||||||||||||||||
Sbjct: 4098 catccatccatgcatgagga 4117
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>gb|AC131120.4| Mus musculus BAC clone RP24-547N4 from 10, complete sequence
          Length = 228657

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    catccatccatgcatgagga 51
             ||||||||||||||||||||
Sbjct: 11999 catccatccatgcatgagga 11980
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>emb|AL772173.16| Mouse DNA sequence from clone RP23-163P22 on chromosome 2, complete
             sequence
          Length = 203185

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    ccacatccatccatgcatga 48
             ||||||||||||||||||||
Sbjct: 48787 ccacatccatccatgcatga 48806
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 2       taataattatggtaaataa 20
               |||||||||||||||||||
Sbjct: 5060730 taataattatggtaaataa 5060748
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>emb|Z97348.1|PFMAL3P1 Plasmodium falciparum MAL3P1, complete sequence
          Length = 65691

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     ataataattatggtaaata 19
             |||||||||||||||||||
Sbjct: 25409 ataataattatggtaaata 25391



 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    ataataattatggtaaata 19
            |||||||||||||||||||
Sbjct: 9478 ataataattatggtaaata 9460
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>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces
              hansenii
          Length = 1249565

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      taataattatggtaaataa 20
              |||||||||||||||||||
Sbjct: 745163 taataattatggtaaataa 745145
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>gb|AC005957.3| Arabidopsis thaliana chromosome 2 clone T15J14 map mi398, complete
             sequence
          Length = 114041

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     taataattatggtaaataa 20
             |||||||||||||||||||
Sbjct: 44498 taataattatggtaaataa 44480
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>emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in linkage group 20,
             complete sequence
          Length = 116609

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     aataattatggtaaataat 21
             |||||||||||||||||||
Sbjct: 47778 aataattatggtaaataat 47796
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 92      cgggcaatattaatcggtg 110
               |||||||||||||||||||
Sbjct: 2177494 cgggcaatattaatcggtg 2177476
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>gb|AC154317.2| Mus musculus BAC clone RP23-346H4 from chromosome 13, complete sequence
          Length = 205164

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     aataattatggtaaataat 21
             |||||||||||||||||||
Sbjct: 69002 aataattatggtaaataat 69020


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,121,982
Number of Sequences: 3902068
Number of extensions: 1121982
Number of successful extensions: 52883
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52829
Number of HSP's gapped (non-prelim): 51
length of query: 133
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 112
effective length of database: 17,151,101,840
effective search space: 1920923406080
effective search space used: 1920923406080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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