>gb|AC163657.3| Mus musculus BAC clone RP24-302A24 from chromosome 1, complete sequence
          Length = 197913

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      tcacattgcctttatcatgtc 26
              |||||||||||||||||||||
Sbjct: 159335 tcacattgcctttatcatgtc 159315

>gb|AC102573.10| Mus musculus chromosome 1, clone RP23-237L7, complete sequence
          Length = 185146

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tcacattgcctttatcatgtc 26
             |||||||||||||||||||||
Sbjct: 16934 tcacattgcctttatcatgtc 16914

>gb|AC091463.9| Mus musculus chromosome 16, clone RP23-301D7, complete sequence
          Length = 232419

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 97    cttctacgagaaaacacaccgaag 120
             |||||| |||||||||||||||||
Sbjct: 58233 cttctatgagaaaacacaccgaag 58210

>emb|AL929583.5| Human DNA sequence from clone RP13-530G12 on chromosome X, complete
             sequence
          Length = 60146

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tgcctttatcatgtcaatgt 31
             ||||||||||||||||||||
Sbjct: 24534 tgcctttatcatgtcaatgt 24553

>emb|BX572091.1| Prochlorococcus marinus MED4 complete genome; segment 2/5
          Length = 349082

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     ttatttgattcataaataca 95
              ||||||||||||||||||||
Sbjct: 267937 ttatttgattcataaataca 267918

>gb|AC010411.7| Homo sapiens chromosome 5 clone CTD-2165P17, complete sequence
          Length = 177807

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tttatcatgtcaatgtctaa 35
              ||||||||||||||||||||
Sbjct: 156100 tttatcatgtcaatgtctaa 156119

>gb|AC008561.5| Homo sapiens chromosome 5 clone CTC-535A4, complete sequence
          Length = 93641

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tttatcatgtcaatgtctaa 35
             ||||||||||||||||||||
Sbjct: 19427 tttatcatgtcaatgtctaa 19446

>gb|AC155647.14| Mus musculus 6 BAC RP24-151A23 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 150024

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    atcatgtcaatgtctaaacagtta 42
             ||||||| ||||||||||||||||
Sbjct: 54600 atcatgtaaatgtctaaacagtta 54577

>gb|AC159234.2| Mus musculus BAC clone RP24-432D6 from chromosome 12, complete sequence
          Length = 152905

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    acttgattcacttatttgattcat 88
             ||||||||||||||| ||||||||
Sbjct: 55996 acttgattcacttatatgattcat 56019

>gb|AC175388.3| Mus musculus BAC clone RP24-128B7 from chromosome y, complete sequence
          Length = 145957

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 74     acttatttgattcataaat 92
              |||||||||||||||||||
Sbjct: 109489 acttatttgattcataaat 109507

>gb|AC125342.4| Mus musculus BAC clone RP24-507D23 from chromosome Y, complete sequence
          Length = 155384

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 74     acttatttgattcataaat 92
              |||||||||||||||||||
Sbjct: 133660 acttatttgattcataaat 133642

>gb|AC145799.2| Xenopus tropicalis clone CH216-55B16, complete sequence
          Length = 163674

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 18    tatcatgtcaatgtctaaacagt 40
             |||||| ||||||||||||||||
Sbjct: 41822 tatcatctcaatgtctaaacagt 41844

>emb|Z47812.1|CET05H10 Caenorhabditis elegans Cosmid T05H10, complete sequence
          Length = 26691

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    attcacttatttgattcat 88
             |||||||||||||||||||
Sbjct: 21951 attcacttatttgattcat 21933

>ref|XM_740804.1| Plasmodium chabaudi chabaudi erythrocyte membrane-associated antigen
            (PC000029.01.0) partial mRNA
          Length = 6594

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 75   cttatttgattcataaata 93
            |||||||||||||||||||
Sbjct: 3582 cttatttgattcataaata 3564

>emb|AL359551.13| Human DNA sequence from clone RP11-371I1 on chromosome 1 Contains a
             novel gene, part of a novel gene (FLJ33910) and a keratin
             18 (KRT18) pseudogene, complete sequence
          Length = 101386

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 59    aaatgcacttgattcacttattt 81
             |||||||||||||||| ||||||
Sbjct: 31298 aaatgcacttgattcatttattt 31276

>ref|XM_964178.1| PREDICTED: Tribolium castaneum similar to CG1718-PA (LOC657736), mRNA
          Length = 6122

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 108  aaacacaccgaaggttacaaaat 130
            ||||||||| |||||||||||||
Sbjct: 4630 aaacacaccaaaggttacaaaat 4652

>emb|X59070.1|BMSPOH B.megaterium spoOH gene for sigma H factor
          Length = 943

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 77  tatttgattcataaataca 95
           |||||||||||||||||||
Sbjct: 320 tatttgattcataaataca 338

>emb|CR387924.6| Zebrafish DNA sequence from clone CH211-259A19 in linkage group 1,
             complete sequence
          Length = 68126

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    atgtcaatgtctaaacagt 40
             |||||||||||||||||||
Sbjct: 20697 atgtcaatgtctaaacagt 20679

>gb|AC183523.3| Mus musculus BAC clone RP24-352A17 from chromosome y, complete sequence
          Length = 150497

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    acttatttgattcataaat 92
             |||||||||||||||||||
Sbjct: 53846 acttatttgattcataaat 53864

>ref|NM_063290.1| Caenorhabditis elegans Ubiquitin Fusion Degradation (yeast UFD
            homolog) family member (ufd-2) (ufd-2) mRNA, complete cds
          Length = 2955

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   attcacttatttgattcat 88
            |||||||||||||||||||
Sbjct: 1408 attcacttatttgattcat 1390

>ref|NM_063291.2| Caenorhabditis elegans Ubiquitin Fusion Degradation (yeast UFD
            homolog) family member (ufd-2) (ufd-2) mRNA, complete cds
          Length = 2952

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   attcacttatttgattcat 88
            |||||||||||||||||||
Sbjct: 1405 attcacttatttgattcat 1387

>ref|NM_001027149.2| Caenorhabditis elegans Ubiquitin Fusion Degradation (yeast UFD
            homolog) family member (ufd-2) (ufd-2) mRNA, complete cds
          Length = 4984

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   attcacttatttgattcat 88
            |||||||||||||||||||
Sbjct: 1402 attcacttatttgattcat 1384

>emb|BX088526.6| Zebrafish DNA sequence from clone CH211-51H9 in linkage group 8,
             complete sequence
          Length = 187161

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    tatttgattcataaataca 95
             |||||||||||||||||||
Sbjct: 77134 tatttgattcataaataca 77152

>dbj|AB195426.1| Sinularia lochmodes sll-2a mRNA for galactose-binding lectin,
           complete cds
          Length = 630

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 106 gaaaacacaccgaaggtta 124
           |||||||||||||||||||
Sbjct: 308 gaaaacacaccgaaggtta 326

>gb|AC174451.3| Mus musculus BAC clone RP23-182A1 from chromosome 3, complete sequence
          Length = 205136

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     ctttatcatgtcaatgtct 33
              |||||||||||||||||||
Sbjct: 110279 ctttatcatgtcaatgtct 110261

>gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone rp23-327i21, complete
              sequence
          Length = 218889

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      caaatcacattgcctttat 20
              |||||||||||||||||||
Sbjct: 119562 caaatcacattgcctttat 119580

>gb|AC140434.3| Mus musculus BAC clone RP24-105G15 from 3, complete sequence
          Length = 160839

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     ctttatcatgtcaatgtct 33
              |||||||||||||||||||
Sbjct: 140235 ctttatcatgtcaatgtct 140217

>emb|AL772184.3| Tetraodon DNA sequence from clone XX-C0AA012DF08, complete sequence
          Length = 69520

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 75    cttatttgattcataaata 93
             |||||||||||||||||||
Sbjct: 29053 cttatttgattcataaata 29035


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,232,858
Number of Sequences: 3902068
Number of extensions: 1232858
Number of successful extensions: 89484
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89429
Number of HSP's gapped (non-prelim): 55
length of query: 139
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 118
effective length of database: 17,151,101,840
effective search space: 2023830017120
effective search space used: 2023830017120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)