ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet58f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 46 0.056
2gb|AC146534.3| Otolemur garnettii clone CH256-50E17, complete se... 46 0.056
3gb|AC074182.6| Homo sapiens BAC clone RP11-553G13 from 2, comple... 42 0.88
4gb|AC129583.15| Mus musculus chromosome 15, clone RP23-197P10, c... 40 3.5
5gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5
6gb|AC147078.2| Pan troglodytes BAC clone RP43-180L22 from 7, com... 40 3.5
7ref|XM_452650.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C10120g ... 40 3.5
8gb|AC034148.9| Homo sapiens BAC clone RP11-155B1 from 7, complet... 40 3.5
9emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 3.5
10gb|AC107614.3| Homo sapiens 3 BAC RP11-719A7 (Roswell Park Cance... 40 3.5
11gb|AC078922.14| Homo sapiens 12q BAC RP11-611E13 (Roswell Park C... 40 3.5
12gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park C... 40 3.5
13gb|AC008490.6| Homo sapiens chromosome 5 clone CTC-426I14, compl... 40 3.5
14gb|AC008513.7|AC008513 Homo sapiens chromosome 5 clone CTC-455C2... 40 3.5
15gb|AC017092.4|AC017092 Homo sapiens BAC clone RP11-510D22 from 5... 40 3.5
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
17dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
18gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswel... 40 3.5
19gb|AC005491.1|AC005491 Homo sapiens clone g1564a016 from 7p14-15... 40 3.5
20gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5
21emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.5
22emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.5

>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 108    gataggaagagaaaaacataaaa 130
              |||||||||||||||||||||||
Sbjct: 241725 gataggaagagaaaaacataaaa 241703



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>gb|AC146534.3| Otolemur garnettii clone CH256-50E17, complete sequence
          Length = 139631

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 108   gataggaagagaaaaacataaaa 130
             |||||||||||||||||||||||
Sbjct: 52219 gataggaagagaaaaacataaaa 52197



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>gb|AC074182.6| Homo sapiens BAC clone RP11-553G13 from 2, complete sequence
          Length = 190436

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 103    atgaagataggaagagaaaaa 123
              |||||||||||||||||||||
Sbjct: 189742 atgaagataggaagagaaaaa 189722



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>gb|AC129583.15| Mus musculus chromosome 15, clone RP23-197P10, complete sequence
          Length = 206094

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   aagataggaagagaaaaaca 125
             ||||||||||||||||||||
Sbjct: 73988 aagataggaagagaaaaaca 74007



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>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01,
             complete sequence
          Length = 147704

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 104   tgaagataggaagagaaaaacataaaat 131
             |||| ||||||| |||||||||||||||
Sbjct: 94066 tgaacataggaatagaaaaacataaaat 94039



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>gb|AC147078.2| Pan troglodytes BAC clone RP43-180L22 from 7, complete sequence
          Length = 217576

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    taggaagagaaaaacataaa 129
              ||||||||||||||||||||
Sbjct: 183507 taggaagagaaaaacataaa 183488



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>ref|XM_452650.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C10120g predicted mRNA
          Length = 1281

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 agataggaagagaaaaacat 126
           ||||||||||||||||||||
Sbjct: 408 agataggaagagaaaaacat 427



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>gb|AC034148.9| Homo sapiens BAC clone RP11-155B1 from 7, complete sequence
          Length = 170928

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   taggaagagaaaaacataaa 129
             ||||||||||||||||||||
Sbjct: 40226 taggaagagaaaaacataaa 40207



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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    agataggaagagaaaaacat 126
              ||||||||||||||||||||
Sbjct: 872842 agataggaagagaaaaacat 872861



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>gb|AC107614.3| Homo sapiens 3 BAC RP11-719A7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160917

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    taggaagagaaaaacataaa 129
              ||||||||||||||||||||
Sbjct: 120652 taggaagagaaaaacataaa 120633



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>gb|AC078922.14| Homo sapiens 12q BAC RP11-611E13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 181000

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   aggaagagaaaaacataaaa 130
             ||||||||||||||||||||
Sbjct: 33812 aggaagagaaaaacataaaa 33793



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>gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 209961

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   aggaagagaaaaacataaaa 130
             ||||||||||||||||||||
Sbjct: 65135 aggaagagaaaaacataaaa 65154



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>gb|AC008490.6| Homo sapiens chromosome 5 clone CTC-426I14, complete sequence
          Length = 113213

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   aggaagagaaaaacataaaa 130
             ||||||||||||||||||||
Sbjct: 51936 aggaagagaaaaacataaaa 51955



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>gb|AC008513.7|AC008513 Homo sapiens chromosome 5 clone CTC-455C23, complete sequence
          Length = 224058

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   aggaagagaaaaacataaaa 130
             ||||||||||||||||||||
Sbjct: 63614 aggaagagaaaaacataaaa 63595



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>gb|AC017092.4|AC017092 Homo sapiens BAC clone RP11-510D22 from 5, complete sequence
          Length = 180072

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   aggaagagaaaaacataaaa 130
             ||||||||||||||||||||
Sbjct: 74178 aggaagagaaaaacataaaa 74197



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 114      aagagaaaaacataaaatcc 133
                ||||||||||||||||||||
Sbjct: 17971030 aagagaaaaacataaaatcc 17971049



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 104      tgaagataggaagagaaaaacataaaat 131
                |||| ||||||| |||||||||||||||
Sbjct: 26449375 tgaacataggaatagaaaaacataaaat 26449348



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>gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 146120

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   aggaagagaaaaacataaaa 130
             ||||||||||||||||||||
Sbjct: 46216 aggaagagaaaaacataaaa 46235



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>gb|AC005491.1|AC005491 Homo sapiens clone g1564a016 from 7p14-15, complete sequence
          Length = 38569

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                        
Query: 99   caccatgaagataggaagagaaaaacat 126
            ||||||||||||||||| ||||||||||
Sbjct: 3382 caccatgaagataggaa-agaaaaacat 3356



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 114      aagagaaaaacataaaatcc 133
                ||||||||||||||||||||
Sbjct: 17897349 aagagaaaaacataaaatcc 17897368



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>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 124294

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    aagagaaaaacataaaatcc 133
              ||||||||||||||||||||
Sbjct: 114662 aagagaaaaacataaaatcc 114643



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>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147543

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   aagagaaaaacataaaatcc 133
             ||||||||||||||||||||
Sbjct: 27526 aagagaaaaacataaaatcc 27507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,966,238
Number of Sequences: 3902068
Number of extensions: 1966238
Number of successful extensions: 36740
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 36672
Number of HSP's gapped (non-prelim): 69
length of query: 268
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 246
effective length of database: 17,147,199,772
effective search space: 4218211143912
effective search space used: 4218211143912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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