ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet58c12 |
|---|---|
| Clone Library Name | barley_pub |
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 48.9 bits (115), Expect = 3e-06 Identities = 23/23 (100%), Positives = 23/23 (100%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 QEASDPEKARKVWELSEKLVGLA Sbjct: 291 QEASDPEKARKVWELSEKLVGLA 313
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 48.9 bits (115), Expect = 3e-06 Identities = 23/23 (100%), Positives = 23/23 (100%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 QEASDPEKARKVWELSEKLVGLA Sbjct: 366 QEASDPEKARKVWELSEKLVGLA 388
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 48.9 bits (115), Expect = 3e-06 Identities = 23/23 (100%), Positives = 23/23 (100%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 QEASDPEKARKVWELSEKLVGLA Sbjct: 366 QEASDPEKARKVWELSEKLVGLA 388
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 45.8 bits (107), Expect = 3e-05 Identities = 22/23 (95%), Positives = 22/23 (95%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 QEASD EKARKVWELSEKLVGLA Sbjct: 376 QEASDAEKARKVWELSEKLVGLA 398
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 44.7 bits (104), Expect = 6e-05 Identities = 21/23 (91%), Positives = 22/23 (95%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 QEASD EKARKVWE+SEKLVGLA Sbjct: 377 QEASDAEKARKVWEVSEKLVGLA 399
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 44.7 bits (104), Expect = 6e-05 Identities = 21/23 (91%), Positives = 22/23 (95%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 +EASD EKARKVWELSEKLVGLA Sbjct: 373 EEASDTEKARKVWELSEKLVGLA 395
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/23 (86%), Positives = 22/23 (95%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 +EASD EKARKVWE+SEKLVGLA Sbjct: 379 EEASDVEKARKVWEISEKLVGLA 401
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 43.1 bits (100), Expect = 2e-04 Identities = 20/23 (86%), Positives = 22/23 (95%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 QEASD EKAR+VWE+SEKLVGLA Sbjct: 383 QEASDVEKARRVWEVSEKLVGLA 405
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 43.1 bits (100), Expect = 2e-04 Identities = 20/23 (86%), Positives = 22/23 (95%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 +EASD EKARKVWE+SEKLVGLA Sbjct: 376 EEASDVEKARKVWEVSEKLVGLA 398
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 40.8 bits (94), Expect = 9e-04 Identities = 18/23 (78%), Positives = 22/23 (95%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 +EASD EKA+K+WE+SEKLVGLA Sbjct: 379 KEASDAEKAKKLWEVSEKLVGLA 401
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 37.4 bits (85), Expect = 0.010 Identities = 15/22 (68%), Positives = 21/22 (95%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGL 237 +EAS+PEKA+++WELSE+L GL Sbjct: 436 EEASNPEKAKRLWELSERLSGL 457
>RPOB_STRPM (Q48VR1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 35.0 bits (79), Expect = 0.048 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = -3 Query: 279 GPQGLGAQREARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRR 106 GP GL R R +H +G M TP + + NL FG+ + Y F++ R+ Sbjct: 494 GPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRK 553 Query: 105 RGLASGR 85 A+GR Sbjct: 554 VDRATGR 560
>RPOB_STRP6 (Q5XE97) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 35.0 bits (79), Expect = 0.048 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = -3 Query: 279 GPQGLGAQREARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRR 106 GP GL R R +H +G M TP + + NL FG+ + Y F++ R+ Sbjct: 494 GPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRK 553 Query: 105 RGLASGR 85 A+GR Sbjct: 554 VDRATGR 560
>RPOB_STRP3 (Q8K8W3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 35.0 bits (79), Expect = 0.048 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = -3 Query: 279 GPQGLGAQREARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRR 106 GP GL R R +H +G M TP + + NL FG+ + Y F++ R+ Sbjct: 494 GPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRK 553 Query: 105 RGLASGR 85 A+GR Sbjct: 554 VDRATGR 560
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 34.7 bits (78), Expect = 0.063 Identities = 14/23 (60%), Positives = 20/23 (86%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 ++ +D KA+++WELSEKLVGLA Sbjct: 300 EKVTDDAKAKRMWELSEKLVGLA 322
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 34.3 bits (77), Expect = 0.082 Identities = 13/22 (59%), Positives = 20/22 (90%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGL 237 ++ SD +KA+++W+LSEKLVGL Sbjct: 300 EQGSDAQKAQRMWDLSEKLVGL 321
>RPOB_XYLFT (Q87A32) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1388 Score = 33.9 bits (76), Expect = 0.11 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = -3 Query: 279 GPQGLGAQREARRTRMIHRKSHGCMHASRTP--ADAQLVVFLNLFGNYHVYAFLEAQLRR 106 GP GL +R R +H +GC+ TP + L+ L +F + Y FLE R+ Sbjct: 566 GPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIGLINSLAVFARTNQYGFLETPYRK 625
>RPOB_XYLFA (Q9PA86) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1388 Score = 33.9 bits (76), Expect = 0.11 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = -3 Query: 279 GPQGLGAQREARRTRMIHRKSHGCMHASRTP--ADAQLVVFLNLFGNYHVYAFLEAQLRR 106 GP GL +R R +H +GC+ TP + L+ L +F + Y FLE R+ Sbjct: 566 GPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIGLINSLAVFARTNQYGFLETPYRK 625
>RPOB_STRP8 (Q8P2Y3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 33.1 bits (74), Expect = 0.18 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = -3 Query: 279 GPQGLGAQREARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRR 106 GP GL R R +H +G M TP + + NL FG+ + Y F++ R+ Sbjct: 494 GPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRK 553 Query: 105 RGLASG 88 A+G Sbjct: 554 VDRATG 559
>RPOB_STRP1 (Q9A1U1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1188 Score = 33.1 bits (74), Expect = 0.18 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = -3 Query: 279 GPQGLGAQREARRTRMIHRKSHGCMHASRTPADAQLVVFLNL--FGNYHVYAFLEAQLRR 106 GP GL R R +H +G M TP + + NL FG+ + Y F++ R+ Sbjct: 494 GPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSFGHLNKYGFIQTPYRK 553 Query: 105 RGLASG 88 A+G Sbjct: 554 VDRATG 559
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 31.2 bits (69), Expect = 0.70 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLVGLA 234 +E +D KA K+W++S KLVGL+ Sbjct: 374 EEVADDSKASKLWDISAKLVGLS 396
>GANA_HUMIN (P83691) Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)| (Endo-1,4-beta-galactanase) (Galactanase) Length = 332 Score = 30.4 bits (67), Expect = 1.2 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 109 QERPCEWPRECIDLVWKMYNFRQTLE**NRRPD*G 5 Q P WP + +L WK+YN+ TL+ NR D G Sbjct: 92 QTTPAGWPSDINNLAWKLYNY--TLDSMNRFADAG 124
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -1 Query: 299 EASDPEKARKVWELSEKLVGLA*STANP 216 EA D E AR++W S +LVGLA + +P Sbjct: 299 EAEDEEVARRLWTESARLVGLAMAHGSP 326
>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC| 2.1.1.43) (Trithorax-related protein 3) (TRX-related protein 3) (Protein SET DOMAIN GROUP 2) Length = 2351 Score = 29.3 bits (64), Expect = 2.6 Identities = 21/56 (37%), Positives = 31/56 (55%) Frame = +3 Query: 27 YYSNVCRKLYIFHTRSMHSRGHSQGLSCVIELLKRRKHDNYQISLKKRQVEHRPAS 194 Y S+ CRKL +RS+HS +SQ + E L R + + SL+K +H+ AS Sbjct: 322 YGSSKCRKLSDDCSRSLHSDHYSQHSA---ERLYRDSYPSKNSSLEKYPRKHQDAS 374
>ENPP1_HUMAN (P22413) Ectonucleotide pyrophosphatase/phosphodiesterase 1 (E-NPP| 1) (Phosphodiesterase I/nucleotide pyrophosphatase 1) (Plasma-cell membrane glycoprotein PC-1) [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide pyrophosphatase Length = 925 Score = 28.9 bits (63), Expect = 3.5 Identities = 17/47 (36%), Positives = 19/47 (40%) Frame = -3 Query: 300 GGQRPREGPQGLGAQREARRTRMIHRKSHGCMHASRTPADAQLVVFL 160 GG+ PREGP G G R G HA+ P D Q L Sbjct: 16 GGRAPREGPAGNGRDR-------------GRSHAAEAPGDPQAAASL 49
>DHAK_ECOLI (P76015) PTS-dependent dihydroxyacetone kinase,| dihydroxyacetone-binding subunit dhaK (EC 2.7.-.-) Length = 366 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 260 LSEKLVGLA*STANPMDACMHLGRR 186 L EKLVG A + +DAC LGR+ Sbjct: 165 LIEKLVGAAAERGDSLDACAELGRK 189
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 28.1 bits (61), Expect = 5.9 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 302 QEASDPEKARKVWELSEKLV 243 +EA E AR +WELSE+L+ Sbjct: 386 EEAQSEETARALWELSERLI 405
>RPOB_ACIAD (Q6FF90) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1362 Score = 27.7 bits (60), Expect = 7.7 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -3 Query: 279 GPQGLGAQREARRTRMIHRKSHGCMHASRTP--ADAQLVVFLNLFGNYHVYAFLEAQLRR 106 GP GL +R R +H+ +G + TP + L+ L+++ + + FLE R+ Sbjct: 543 GPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPYRK 602 Query: 105 RGLASGRES 79 + GR S Sbjct: 603 --VVDGRVS 609
>RPOB_WOLPI (Q93MK7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1436 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/58 (25%), Positives = 25/58 (43%) Frame = -3 Query: 279 GPQGLGAQREARRTRMIHRKSHGCMHASRTPADAQLVVFLNLFGNYHVYAFLEAQLRR 106 GP GL +R R +H +G + TP L ++ + Y F+E+ R+ Sbjct: 561 GPGGLTRERAGFEVRDVHPTHYGRICPIETPEQNIAYNSLAIYARINKYGFIESPYRK 618
>GANA_THIHE (P83692) Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)| (Endo-1,4-beta-galactanase) (Galactanase) Length = 332 Score = 27.7 bits (60), Expect = 7.7 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -2 Query: 109 QERPCEWPRECIDLVWKMYNF 47 Q P WP + +L WK+YN+ Sbjct: 92 QTMPAGWPSDIDNLSWKLYNY 112
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -1 Query: 299 EASDPEKARKVWELSEKLVGL 237 +A D ARK+W++SE +VGL Sbjct: 314 KAMDESVARKLWDISEVMVGL 334 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,430,670 Number of Sequences: 219361 Number of extensions: 692375 Number of successful extensions: 1912 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 1871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1912 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
