| Clone Name | rbaet58c06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_681746.1| PREDICTED: Danio rerio similar to SOCS box-containing WD protein SWiP-1 (LOC558516), mRNA Length = 2367 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 atcgtgacaaaaagcaacaga 83 ||||||||||||||||||||| Sbjct: 2118 atcgtgacaaaaagcaacaga 2098
>emb|Z49556.1|SCYJR056C S.cerevisiae chromosome X reading frame ORF YJR056c Length = 4795 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 tgagcgtgagcgtgatcgtga 69 ||||||||||||||||||||| Sbjct: 2631 tgagcgtgagcgtgatcgtga 2611
>gb|BC054567.1| Danio rerio SOCS box-containing WD protein SWiP-1, mRNA (cDNA clone MGC:63905 IMAGE:6790237), complete cds Length = 3442 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 atcgtgacaaaaagcaacaga 83 ||||||||||||||||||||| Sbjct: 1251 atcgtgacaaaaagcaacaga 1231
>gb|L47993.1|YSCORFSAA Saccharomyces cerevisiae ORF genes, complete cds Length = 61989 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 tgagcgtgagcgtgatcgtga 69 ||||||||||||||||||||| Sbjct: 6149 tgagcgtgagcgtgatcgtga 6129
>emb|AL928870.5| Zebrafish DNA sequence from clone CH211-237D5 in linkage group 20, complete sequence Length = 179253 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 atcgtgacaaaaagcaacaga 83 ||||||||||||||||||||| Sbjct: 165308 atcgtgacaaaaagcaacaga 165328
>ref|NM_199633.1| Danio rerio SOCS box-containing WD protein SWiP-1 (wsb1), mRNA Length = 3442 Score = 42.1 bits (21), Expect = 0.32 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 atcgtgacaaaaagcaacaga 83 ||||||||||||||||||||| Sbjct: 1251 atcgtgacaaaaagcaacaga 1231
>gb|AC113720.6| Rattus norvegicus 1 BAC CH230-117B1 (Children's Hospital Oakland Research Institute) complete sequence Length = 249629 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 gtgacaaaaagcaacagaag 85 |||||||||||||||||||| Sbjct: 41528 gtgacaaaaagcaacagaag 41509
>gb|AC107294.7| Homo sapiens 3 BAC RP11-329B9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193421 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aaaagcaacagaagaatcta 91 |||||||||||||||||||| Sbjct: 10928 aaaagcaacagaagaatcta 10947
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 40.1 bits (20), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 2 cacatgaagaacggaacaagatgaggcatata 33 |||||||||||| |||| ||||||| |||||| Sbjct: 1160 cacatgaagaacagaacgagatgagacatata 1129 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 aacagaagaatctaccacc 96 ||||||||||||||||||| Sbjct: 1098 aacagaagaatctaccacc 1080
>emb|AL954372.6| Zebrafish DNA sequence from clone CH211-259G3, complete sequence Length = 162539 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 taccaccggttacatttttt 109 |||||||||||||||||||| Sbjct: 38074 taccaccggttacatttttt 38055
>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete sequence Length = 221374 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tgacaaaaagcaacagaaga 86 |||||||||||||||||||| Sbjct: 143007 tgacaaaaagcaacagaaga 142988
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 aagcaacagaagaatctac 92 ||||||||||||||||||| Sbjct: 36898 aagcaacagaagaatctac 36916
>ref|XM_654058.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1546.2), mRNA Length = 4818 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 49 tgagcgtgagcgtgatcgtgaca 71 ||||||||||||||| ||||||| Sbjct: 432 tgagcgtgagcgtgagcgtgaca 454
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 aagcaacagaagaatctac 92 ||||||||||||||||||| Sbjct: 32707009 aagcaacagaagaatctac 32706991
>gb|AC078937.1| Homo sapiens BAC clone GS1-113G16 from 7, complete sequence Length = 62035 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 atgaggcatatactattac 40 ||||||||||||||||||| Sbjct: 53605 atgaggcatatactattac 53587
>emb|CR847506.8| Zebrafish DNA sequence from clone CH211-225N13 in linkage group 11, complete sequence Length = 199426 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 attgagcgtgagcgtgatcgtga 69 ||||||||||||||||| ||||| Sbjct: 99945 attgagcgtgagcgtgagcgtga 99923
>emb|BX927353.7| Zebrafish DNA sequence from clone CH211-83F14 in linkage group 2, complete sequence Length = 94558 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 attgagcgtgagcgtgatcgtga 69 ||||||||||||||||| ||||| Sbjct: 7198 attgagcgtgagcgtgagcgtga 7220
>ref|XM_533458.2| PREDICTED: Canis familiaris RNA binding motif protein 16 (KIAA1116), mRNA Length = 4690 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 ttgagcgtgagcgtgatcg 66 ||||||||||||||||||| Sbjct: 1324 ttgagcgtgagcgtgatcg 1306
>emb|CR383660.9| Zebrafish DNA sequence from clone DKEY-1H22 in linkage group 14, complete sequence Length = 139631 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 attgagcgtgagcgtgatcgtga 69 ||||||||||||||||| ||||| Sbjct: 40789 attgagcgtgagcgtgagcgtga 40811
>gb|AC165175.2| Zea mays clone ZMMBBb-136N21, complete sequence Length = 129274 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 agatgaggcatatactatt 38 ||||||||||||||||||| Sbjct: 25142 agatgaggcatatactatt 25160
>emb|AL929301.6| Zebrafish DNA sequence from clone BUSM1-SL7 Contains two genes for novel serine proteases, a novel serine protease pseudogene, three genes similar to vertebrate PIM1 (pim-1 oncogene), a putative novel gene and a CpG island, complete sequence Length = 64032 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 attgagcgtgagcgtgatcgtga 69 ||||||||||||||||| ||||| Sbjct: 39745 attgagcgtgagcgtgagcgtga 39723
>emb|AL691431.20| Mouse DNA sequence from clone RP23-257P7 on chromosome 4 Contains the 5' end of a novel gene (2810031P15Rik), a ribosomal protein L10 (Rpl10) pseudogene, a ribosomal protein S6 (Rps6) pseudogene and two CpG islands, complete sequence Length = 199847 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 atgaagaacggaacaagat 23 ||||||||||||||||||| Sbjct: 165857 atgaagaacggaacaagat 165839
>gb|AC100834.3| Homo sapiens chromosome 15, clone CTD-2125J1, complete sequence Length = 152005 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 aaaaagcaacagaagaatc 89 ||||||||||||||||||| Sbjct: 81885 aaaaagcaacagaagaatc 81903
>emb|BX548054.19| Zebrafish DNA sequence from clone CH211-237N4 in linkage group 14, complete sequence Length = 128658 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 attgagcgtgagcgtgatcgtga 69 ||||||||||||||||| ||||| Sbjct: 77130 attgagcgtgagcgtgagcgtga 77108
>gb|AC012271.11| Homo sapiens chromosome 15, clone RP11-64O3, complete sequence Length = 98232 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 aaaaagcaacagaagaatc 89 ||||||||||||||||||| Sbjct: 28083 aaaaagcaacagaagaatc 28101
>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence Length = 148298 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 attgagcgtgagcgtgatcgtga 69 ||||||||||||||||| ||||| Sbjct: 5736 attgagcgtgagcgtgagcgtga 5714
>emb|BX324225.7| Zebrafish DNA sequence from clone DKEY-180I22 in linkage group 21, complete sequence Length = 207125 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 attgagcgtgagcgtgatcgtga 69 ||||||||||||||||| ||||| Sbjct: 177398 attgagcgtgagcgtgagcgtga 177376
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 aagcaacagaagaatctac 92 ||||||||||||||||||| Sbjct: 32797519 aagcaacagaagaatctac 32797501
>gb|AC073628.4| Homo sapiens BAC clone RP11-146P1 from 2, complete sequence Length = 159250 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 acaaaaagcaacagaagaa 87 ||||||||||||||||||| Sbjct: 125358 acaaaaagcaacagaagaa 125376
>emb|BX005128.4| Zebrafish DNA sequence from clone CH211-129H14 in linkage group 17, complete sequence Length = 152345 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 attgagcgtgagcgtgatcgtga 69 ||||||||||||||||| ||||| Sbjct: 12591 attgagcgtgagcgtgagcgtga 12613
>dbj|BS000111.1| Pan troglodytes chromosome 22 clone:PTB-093K04, map 22, complete sequences Length = 184428 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 atatactattacacacgaa 47 ||||||||||||||||||| Sbjct: 4072 atatactattacacacgaa 4090
>dbj|BS000110.1| Pan troglodytes chromosome 22 clone:PTB-090P24, map 22, complete sequences Length = 157686 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 atatactattacacacgaa 47 ||||||||||||||||||| Sbjct: 132084 atatactattacacacgaa 132102
>ref|XM_560555.1| Anopheles gambiae str. PEST ENSANGP00000025790 (ENSANGG00000025127), partial mRNA Length = 1593 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 caacagaagaatctaccac 95 ||||||||||||||||||| Sbjct: 620 caacagaagaatctaccac 638 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 caacagaagaatctaccac 95 ||||||||||||||||||| Sbjct: 527 caacagaagaatctaccac 545 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 caacagaagaatctaccac 95 ||||||||||||||||||| Sbjct: 71 caacagaagaatctaccac 89
>ref|XM_560625.1| Anopheles gambiae str. PEST ENSANGP00000027443 (ENSANGG00000023491), partial mRNA Length = 1023 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 caacagaagaatctaccac 95 ||||||||||||||||||| Sbjct: 332 caacagaagaatctaccac 350
>ref|XM_555219.1| Anopheles gambiae str. PEST ENSANGP00000016373 (ENSANGG00000013884), partial mRNA Length = 807 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 caacagaagaatctaccac 95 ||||||||||||||||||| Sbjct: 656 caacagaagaatctaccac 674 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 caacagaagaatctaccac 95 ||||||||||||||||||| Sbjct: 86 caacagaagaatctaccac 104
>emb|BX571881.6| Zebrafish DNA sequence from clone DKEY-251M4 in linkage group 18, complete sequence Length = 100776 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 attgagcgtgagcgtgatcgtga 69 ||||||||||||||||| ||||| Sbjct: 77232 attgagcgtgagcgtgagcgtga 77254
>dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, section 54/105 Length = 340000 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 atatactattacacacgaa 47 ||||||||||||||||||| Sbjct: 167725 atatactattacacacgaa 167743
>dbj|AP000247.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP5-871G18, complete sequence Length = 113919 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 atatactattacacacgaa 47 ||||||||||||||||||| Sbjct: 22271 atatactattacacacgaa 22289
>emb|CR974477.12| Pig DNA sequence from clone CH242-217L7 on chromosome 17, complete sequence Length = 204661 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 54 gtgagcgtgatcgtgacaaaaag 76 |||||||||||||||| |||||| Sbjct: 90547 gtgagcgtgatcgtgaaaaaaag 90569
>dbj|AP000208.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone f43D11-119B8, segment 6/12, complete sequence Length = 100000 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 atatactattacacacgaa 47 ||||||||||||||||||| Sbjct: 41713 atatactattacacacgaa 41731
>emb|AL732485.8| Mouse DNA sequence from clone RP23-70G24 on chromosome 2, complete sequence Length = 92562 Score = 38.2 bits (19), Expect = 4.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 69 acaaaaagcaacagaagaatcta 91 |||||||||||||||| |||||| Sbjct: 4428 acaaaaagcaacagaaaaatcta 4406 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 900,537 Number of Sequences: 3902068 Number of extensions: 900537 Number of successful extensions: 69816 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69687 Number of HSP's gapped (non-prelim): 119 length of query: 109 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 88 effective length of database: 17,151,101,840 effective search space: 1509296961920 effective search space used: 1509296961920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)