ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet57h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein 404 e-110
2emb|AL772318.6| Mouse DNA sequence from clone RP23-77I17 on chro... 46 0.057
3gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Canc... 42 0.88
4gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Can... 42 0.88
5ref|XM_521983.1| PREDICTED: Pan troglodytes similar to expressed... 40 3.5
6ref|NM_001005210.1| Homo sapiens leucine rich repeat containing ... 40 3.5
7emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in... 40 3.5
8gb|AC120055.5| Homo sapiens chromosome 18, clone CTD-2362J14, co... 40 3.5
9gb|AC007528.5| Homo sapiens 12 BAC RP11-473N11 (Roswell Park Can... 40 3.5
10emb|AL117377.18|HSJ1037B9 Human DNA sequence from clone RP5-1037... 40 3.5
11gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 3.5
12dbj|AK127591.1| Homo sapiens cDNA FLJ45686 fis, clone FCBBF3012443 40 3.5
13gb|AC103676.2| Homo sapiens chromosome 18, clone CTD-3223E7, com... 40 3.5
14gb|AC016493.14| Homo sapiens chromosome 18, clone RP11-58G13, co... 40 3.5
15gb|AC091555.6| Homo sapiens chromosome 18, clone CTD-2387I11, co... 40 3.5
16gb|AC079064.6| Homo sapiens chromosome 11, clone RP11-485O14, co... 40 3.5
17gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, com... 40 3.5
18dbj|AP001786.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.5
19gb|DQ151348.1| Petromyzon marinus clone T.D8 variable lymphocyte... 40 3.5 
>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein
          Length = 1225

 Score =  404 bits (204), Expect = e-110
 Identities = 210/212 (99%)
 Strand = Plus / Minus

                                                                        
Query: 58   aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 aacaactttgctggatttgcacaacaacgagcagtactacacaacaactgagcactgatg 1140

                                                                        
Query: 118  agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagc 177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1139 agattacatacaagtcctctgtctgggttcaggtgaatacagagcaagagcaagagtagt 1080

                                                                        
Query: 178  acatcaaacttggaagacaaattggaattccacggtaacacggacgatgggaagagaggg 237
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1079 acatcaaacttggaagacaaattggaattccacggtaacagggacgatgggaagagaggg 1020

                                            
Query: 238  ccgcccccatcagaaagaaattcactcagaac 269
            ||||||||||||||||||||||||||||||||
Sbjct: 1019 ccgcccccatcagaaagaaattcactcagaac 988
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>emb|AL772318.6| Mouse DNA sequence from clone RP23-77I17 on chromosome 4, complete
              sequence
          Length = 249534

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 135    tctgtctgggttcaggtgaatacagag 161
              ||||||||||| |||||||||||||||
Sbjct: 225070 tctgtctgggtacaggtgaatacagag 225044
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>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 210101

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   acatcaaacttggaagacaaa 198
             |||||||||||||||||||||
Sbjct: 24157 acatcaaacttggaagacaaa 24177
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>gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 171960

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 178    acatcaaacttggaagacaaa 198
              |||||||||||||||||||||
Sbjct: 121183 acatcaaacttggaagacaaa 121203
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>ref|XM_521983.1| PREDICTED: Pan troglodytes similar to expressed sequence AI841794
           (LOC466584), mRNA
          Length = 1269

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  tgctggatttgcacaacaac 85
           ||||||||||||||||||||
Sbjct: 407 tgctggatttgcacaacaac 426
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>ref|NM_001005210.1| Homo sapiens leucine rich repeat containing 55 (LRRC55), mRNA
          Length = 3797

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  tgctggatttgcacaacaac 85
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573
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>emb|CR339052.6| Zebrafish DNA sequence from clone CH211-218E6 in linkage group 10,
             complete sequence
          Length = 127879

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   cagaaagaaattcactcaga 267
             ||||||||||||||||||||
Sbjct: 53978 cagaaagaaattcactcaga 53997
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>gb|AC120055.5| Homo sapiens chromosome 18, clone CTD-2362J14, complete sequence
          Length = 96630

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tgaaatctaattgaagaggg 47
             ||||||||||||||||||||
Sbjct: 44361 tgaaatctaattgaagaggg 44380
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>gb|AC007528.5| Homo sapiens 12 BAC RP11-473N11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188451

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    cagagcaagagcaagagtag 176
              ||||||||||||||||||||
Sbjct: 155822 cagagcaagagcaagagtag 155841
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>emb|AL117377.18|HSJ1037B9 Human DNA sequence from clone RP5-1037B9 on chromosome 20p12.1-13
             Contains STSs, GSSs and a putative CpG island, complete
             sequence
          Length = 82183

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   cacatcaaacttggaagaca 196
             ||||||||||||||||||||
Sbjct: 72891 cacatcaaacttggaagaca 72872
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 241     cccccatcagaaagaaattcactc 264
               ||||||||||||| ||||||||||
Sbjct: 1961051 cccccatcagaaacaaattcactc 1961028
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>dbj|AK127591.1| Homo sapiens cDNA FLJ45686 fis, clone FCBBF3012443
          Length = 3797

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  tgctggatttgcacaacaac 85
           ||||||||||||||||||||
Sbjct: 554 tgctggatttgcacaacaac 573
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>gb|AC103676.2| Homo sapiens chromosome 18, clone CTD-3223E7, complete sequence
          Length = 199566

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     tgaaatctaattgaagaggg 47
              ||||||||||||||||||||
Sbjct: 190952 tgaaatctaattgaagaggg 190971
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>gb|AC016493.14| Homo sapiens chromosome 18, clone RP11-58G13, complete sequence
          Length = 163936

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    ttggaagacaaattggaatt 206
              ||||||||||||||||||||
Sbjct: 159892 ttggaagacaaattggaatt 159873
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>gb|AC091555.6| Homo sapiens chromosome 18, clone CTD-2387I11, complete sequence
          Length = 86914

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   tgaaatctaattgaagaggg 47
            ||||||||||||||||||||
Sbjct: 9286 tgaaatctaattgaagaggg 9267
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>gb|AC079064.6| Homo sapiens chromosome 11, clone RP11-485O14, complete sequence
          Length = 164009

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   catcagaaagaaattcactcagaa 268
             ||||||||| ||||||||||||||
Sbjct: 52709 catcagaaaaaaattcactcagaa 52732
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>gb|AC023577.6| Homo sapiens chromosome 18, clone RP11-645D5, complete sequence
          Length = 166503

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   ttggaagacaaattggaatt 206
             ||||||||||||||||||||
Sbjct: 50150 ttggaagacaaattggaatt 50131
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>dbj|AP001786.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-176J24, complete
             sequences
          Length = 171744

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    tgctggatttgcacaacaac 85
             ||||||||||||||||||||
Sbjct: 92890 tgctggatttgcacaacaac 92909
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>gb|DQ151348.1| Petromyzon marinus clone T.D8 variable lymphocyte receptor
           diversity region (VLR) mRNA, partial cds
          Length = 534

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  tgctggatttgcacaacaac 85
           ||||||||||||||||||||
Sbjct: 263 tgctggatttgcacaacaac 282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,905,859
Number of Sequences: 3902068
Number of extensions: 2905859
Number of successful extensions: 53439
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53408
Number of HSP's gapped (non-prelim): 31
length of query: 269
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 247
effective length of database: 17,147,199,772
effective search space: 4235358343684
effective search space used: 4235358343684
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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