ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet57h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
2dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
3dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4dbj|AK072161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
5ref|NM_193768.1| Oryza sativa (japonica cultivar-group), predic... 48 0.016
6gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, comple... 46 0.062
7gb|AY107092.1| Zea mays PCO102030 mRNA sequence 46 0.062
8gb|AC109585.4| Homo sapiens chromosome 3 clone RP11-802J21, comp... 44 0.25
9emb|AL591027.12| Human DNA sequence from clone RP11-474J16 on ch... 44 0.25
10emb|AL161797.10| Human DNA sequence from clone RP5-871E2 on chro... 44 0.25
11emb|AL157934.17| Human DNA sequence from clone RP11-449M9 on chr... 44 0.25
12emb|AL121914.31|HSJ1167H4 Human DNA sequence from clone RP5-1167... 44 0.25
13gb|AC096916.2| Homo sapiens chromosome 3 clone RP11-92I24, compl... 44 0.25
14ref|XM_712664.1| Candida albicans SC5314 putative transcription ... 42 0.97
15ref|XM_712570.1| Candida albicans SC5314 putative transcription ... 42 0.97
16gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosom... 42 0.97
17emb|AL031543.1|SPCC74 S.pombe chromosome III cosmid c74 42 0.97
18emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in ... 42 0.97
19gb|AC009301.3| Homo sapiens BAC clone RP11-62F14 from 2, complet... 42 0.97
20dbj|AB016871.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 0.97
21gb|AC134614.4| Mus musculus BAC clone RP23-148D12 from 14, compl... 42 0.97
22gb|AC108318.8| Rattus norvegicus 2 BAC CH230-256E18 (Children's ... 40 3.8
23gb|AE009275.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 3.8
24gb|AE008337.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 3.8
25gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 3.8
26ref|XM_749401.1| Aspergillus fumigatus Af293 C2H2 transcription ... 40 3.8
27ref|XM_447475.1| Candida glabrata CBS138 hypothetical protein (C... 40 3.8
28ref|XM_816615.1| Trypanosoma cruzi strain CL Brener mucin TcMUCI... 40 3.8
29gb|AC122932.4| Mus musculus BAC clone RP23-16A20 from 1, complet... 40 3.8
30ref|XM_718945.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 3.8
31gb|AC073318.8| Homo sapiens BAC clone RP11-266F12 from 7, comple... 40 3.8
32ref|XM_739823.1| Plasmodium chabaudi chabaudi asparagine/asparta... 40 3.8
33ref|XM_737112.1| Plasmodium chabaudi chabaudi geranylgeranyl tra... 40 3.8
34ref|XM_673784.1| Plasmodium berghei strain ANKA asparagine/aspar... 40 3.8
35gb|AC153643.22| Medicago truncatula clone mth2-109d3, complete s... 40 3.8
36gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence 40 3.8
37emb|AL356000.13| Human DNA sequence from clone RP11-296P7 on chr... 40 3.8
38emb|AL356252.10| Human DNA sequence from clone RP11-468L10 on ch... 40 3.8
39emb|AL354722.10| Human DNA sequence from clone RP11-744O14 on ch... 40 3.8
40emb|AL161787.13| Human DNA sequence from clone RP11-40C6 on chro... 40 3.8
41emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D... 40 3.8
42emb|AL096707.13|HSJ729N16 Human DNA sequence from clone RP4-729N... 40 3.8
43gb|CP000088.1| Thermobifida fusca YX, complete genome 40 3.8
44emb|CR380955.1| Candida glabrata strain CBS138 chromosome I comp... 40 3.8
45emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 3.8
46gb|AC131968.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
47emb|CR388096.8| Zebrafish DNA sequence from clone DKEY-146L2 in ... 40 3.8
48gb|AC132032.1| Homo sapiens 3 BAC RP11-4H14 (Roswell Park Cancer... 40 3.8
49emb|BX511062.12| Zebrafish DNA sequence from clone CH211-266M11 ... 40 3.8
50gb|AF009630.1| Bacteriophage bIL170, complete genome 40 3.8
51emb|CR624797.1| full-length cDNA clone CS0DF025YK19 of Fetal bra... 40 3.8
52dbj|AK094969.1| Homo sapiens cDNA FLJ37650 fis, clone BRHIP20005... 40 3.8
53gb|AC010996.9| Homo sapiens chromosome 10 clone RP11-118J22, com... 40 3.8
54gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare st... 40 3.8
55gb|AC092612.3| Homo sapiens BAC clone RP11-174F8 from 4, complet... 40 3.8
56dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
57gb|AC008350.4|AC008350 Drosophila melanogaster, chromosome 2R, r... 40 3.8
58gb|AC096720.3| Homo sapiens BAC clone RP11-17P16 from 4, complet... 40 3.8
59gb|AC092584.2| Homo sapiens BAC clone RP11-20H7 from 2, complete... 40 3.8
60gb|AC104781.4| Homo sapiens BAC clone RP11-30C22 from 2, complet... 40 3.8
61gb|AC079245.35| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 3.8
62dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
63gb|AC135964.2| Mus musculus BAC clone RP23-306G18 from chromosom... 40 3.8
64gb|AC142113.2| Mus musculus BAC clone RP23-444K20 from chromosom... 40 3.8
65dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 3.8
66gb|AF235093.1|AF235093 Homo sapiens chromosome 21 map 21q21 clon... 40 3.8
67dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
68dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
69dbj|BS000022.1| Pan troglodytes chromosome 22 clone:PTB-131J13, ... 40 3.8
70dbj|BS000021.1| Pan troglodytes chromosome 22 clone:PTB-141K15, ... 40 3.8
71emb|AL163210.2|HS21C010 Homo sapiens chromosome 21 segment HS21C010 40 3.8
72gb|AE003458.3| Drosophila melanogaster chromosome 2R, section 66... 40 3.8
73dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
74gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
75emb|AL357615.7|HS373D10 Homo sapiens chromosome 9 BAC RP11-373D1... 40 3.8
76emb|AL928841.6| Mouse DNA sequence from clone RP23-95M4 on chrom... 40 3.8
77emb|AJ010598.1|HS135E14 Homo sapiens chromosome 21 PAC RPCIP704E... 40 3.8
78emb|AL391667.19| Human DNA sequence from clone RP11-214L15 on ch... 40 3.8
79gb|AC102164.7| Mus musculus chromosome 3, clone RP23-438M14, com... 40 3.8
80gb|AC140979.17| Mus musculus chromosome 1, clone RP23-307M11, co... 40 3.8
81dbj|AB009350.1| Citrus sinensis mRNA for chalcone synthase, comp... 40 3.8 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 194      tgtcagccggctatgaacacgaggctttgcctgacggccgga 235
                |||||||| ||||||||||| | ||| |||||||||||||||
Sbjct: 18009955 tgtcagccagctatgaacactaagctctgcctgacggccgga 18009996



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 121      ttataaaaaggaaaataaaa 140
                ||||||||||||||||||||
Sbjct: 29625892 ttataaaaaggaaaataaaa 29625911



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 157     tgctgttgctgtatgcctgt 176
               ||||||||||||||||||||
Sbjct: 3440270 tgctgttgctgtatgcctgt 3440251
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>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0054L14
          Length = 150022

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 194   tgtcagccggctatgaacacgaggctttgcctgacggccgga 235
             |||||||| ||||||||||| | ||| |||||||||||||||
Sbjct: 37196 tgtcagccagctatgaacactaagctctgcctgacggccgga 37237
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>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0520B06
          Length = 142667

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 194    tgtcagccggctatgaacacgaggctttgcctgacggccgga 235
              |||||||| ||||||||||| | ||| |||||||||||||||
Sbjct: 129790 tgtcagccagctatgaacactaagctctgcctgacggccgga 129831
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>dbj|AK072161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132P06, full
            insert sequence
          Length = 2716

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 194  tgtcagccggctatgaacacgaggctttgcctgacggccgga 235
            |||||||| ||||||||||| | ||| |||||||||||||||
Sbjct: 2548 tgtcagccagctatgaacactaagctctgcctgacggccgga 2507
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>ref|NM_193768.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1563

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 196  tcagccggctatgaacacgaggctttgcctgacggccgga 235
            |||||| ||||||||||| | ||| |||||||||||||||
Sbjct: 1563 tcagccagctatgaacactaagctctgcctgacggccgga 1524
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>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence
          Length = 221903

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 118   cttttataaaaaggaaaataaaaactc 144
             |||||||||||| ||||||||||||||
Sbjct: 24831 cttttataaaaaagaaaataaaaactc 24857
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>gb|AY107092.1| Zea mays PCO102030 mRNA sequence
          Length = 1123

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 215 aggctttgcctgacggccggagaggagcagatcagggagccgaaaat 261
           |||||||||||||| ||||||   ||||||||||| | |||||||||
Sbjct: 879 aggctttgcctgactgccggaaccgagcagatcagcgtgccgaaaat 833
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>gb|AC109585.4| Homo sapiens chromosome 3 clone RP11-802J21, complete sequence
          Length = 213077

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 142    ctcatcacattttgctgctgtt 163
              ||||||||||||||||||||||
Sbjct: 198580 ctcatcacattttgctgctgtt 198601
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>emb|AL591027.12| Human DNA sequence from clone RP11-474J16 on chromosome 6 Contains a
             CpG island, complete sequence
          Length = 111635

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 168   tatgcctgtgtactagtgtata 189
             ||||||||||||||||||||||
Sbjct: 61125 tatgcctgtgtactagtgtata 61104
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>emb|AL161797.10| Human DNA sequence from clone RP5-871E2 on chromosome 1p22.2-31.1
             Contains the 3' end of a novel gene (FLJ20403), complete
             sequence
          Length = 100571

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   ttttataaaaaggaaaataaaa 140
             ||||||||||||||||||||||
Sbjct: 95906 ttttataaaaaggaaaataaaa 95927
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>emb|AL157934.17| Human DNA sequence from clone RP11-449M9 on chromosome Xq13.1-13.3
             Contains the 3' end of the SLC16A2 gene for solute carrier
             family 16 member 2 and two CpG islands, complete sequence
          Length = 106497

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 126   aaaaggaaaataaaaactcatc 147
             ||||||||||||||||||||||
Sbjct: 56070 aaaaggaaaataaaaactcatc 56091
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>emb|AL121914.31|HSJ1167H4 Human DNA sequence from clone RP5-1167H4 on chromosome 20 Contains the
             C20orf108 gene, the STK6 gene for serine/threonine kinase
             6, the CSTF1 gene for cleavage stimulation factor 3'
             pre-RNA subunit 1 (50 kDa), the C20orf32 gene for a novel
             SH3 domain-containing protein (HEF like protein, HEFL),
             the RPL39P gene for ribosomal protein L39 pseudogene and
             two CpG islands, complete sequence
          Length = 135693

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 122   tataaaaaggaaaataaaaact 143
             ||||||||||||||||||||||
Sbjct: 74446 tataaaaaggaaaataaaaact 74425
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>gb|AC096916.2| Homo sapiens chromosome 3 clone RP11-92I24, complete sequence
          Length = 163539

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 142   ctcatcacattttgctgctgtt 163
             ||||||||||||||||||||||
Sbjct: 63346 ctcatcacattttgctgctgtt 63367
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>ref|XM_712664.1| Candida albicans SC5314 putative transcription factor (CaO19_5380),
           mRNA
          Length = 2586

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 145 atcacattttgctgctgttgctgta 169
           |||||||||||||| ||||||||||
Sbjct: 467 atcacattttgctggtgttgctgta 443
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>ref|XM_712570.1| Candida albicans SC5314 putative transcription factor
           (CaO19_12835), mRNA
          Length = 2586

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 145 atcacattttgctgctgttgctgta 169
           |||||||||||||| ||||||||||
Sbjct: 467 atcacattttgctggtgttgctgta 443
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>gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosome 14, complete sequence
          Length = 204588

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    ttataaaaaggaaaataaaaa 141
              |||||||||||||||||||||
Sbjct: 161309 ttataaaaaggaaaataaaaa 161289
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>emb|AL031543.1|SPCC74 S.pombe chromosome III cosmid c74
          Length = 35637

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   ttataaaaaggaaaataaaaa 141
             |||||||||||||||||||||
Sbjct: 20312 ttataaaaaggaaaataaaaa 20292
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>emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in linkage group 23,
            complete sequence
          Length = 171486

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 126  aaaaggaaaataaaaactcat 146
            |||||||||||||||||||||
Sbjct: 9264 aaaaggaaaataaaaactcat 9244
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>gb|AC009301.3| Homo sapiens BAC clone RP11-62F14 from 2, complete sequence
          Length = 129625

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 123   ataaaaaggaaaataaaaact 143
             |||||||||||||||||||||
Sbjct: 90522 ataaaaaggaaaataaaaact 90542
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>dbj|AB016871.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16L22
          Length = 79109

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 116   ttcttttataaaaaggaaaataaaa 140
             ||||||||||||||| |||||||||
Sbjct: 73088 ttcttttataaaaagaaaaataaaa 73064
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>gb|AC134614.4| Mus musculus BAC clone RP23-148D12 from 14, complete sequence
          Length = 209278

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 121  ttataaaaaggaaaataaaaa 141
            |||||||||||||||||||||
Sbjct: 8904 ttataaaaaggaaaataaaaa 8884
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>gb|AC108318.8| Rattus norvegicus 2 BAC CH230-256E18 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 210322

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   taaaaaggaaaataaaaact 143
             ||||||||||||||||||||
Sbjct: 27980 taaaaaggaaaataaaaact 27999
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>gb|AE009275.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 45 of
            187 of the complete sequence
          Length = 12969

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  ggctttgcctgacggccgga 235
            ||||||||||||||||||||
Sbjct: 5992 ggctttgcctgacggccgga 6011
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>gb|AE008337.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 141 of
            187 of the complete sequence
          Length = 9393

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  ggctttgcctgacggccgga 235
            ||||||||||||||||||||
Sbjct: 3156 ggctttgcctgacggccgga 3137
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     gcctgacggccggagaggag 241
               ||||||||||||||||||||
Sbjct: 1610779 gcctgacggccggagaggag 1610760
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>ref|XM_749401.1| Aspergillus fumigatus Af293 C2H2 transcription factor Swi5
           (Afu3g11250) partial mRNA
          Length = 2319

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 cattttgctgctgttgctgt 168
           ||||||||||||||||||||
Sbjct: 481 cattttgctgctgttgctgt 462
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>ref|XM_447475.1| Candida glabrata CBS138 hypothetical protein (CAGL0I05170g) partial
           mRNA
          Length = 2106

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 ttttgctgctgttgctgtat 170
           ||||||||||||||||||||
Sbjct: 458 ttttgctgctgttgctgtat 439
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>ref|XM_816615.1| Trypanosoma cruzi strain CL Brener mucin TcMUCII
           (Tc00.1047053508873.240) partial mRNA
          Length = 651

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 240 agcagatcagggagccgaaaatgc 263
           ||||||||||||||||||| ||||
Sbjct: 402 agcagatcagggagccgaagatgc 425
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>gb|AC122932.4| Mus musculus BAC clone RP23-16A20 from 1, complete sequence
          Length = 197193

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 166    tgtatgcctgtgtactagtgtatatgtgtgtc 197
              |||||||||||||||| |||||  ||||||||
Sbjct: 158236 tgtatgcctgtgtacttgtgtagttgtgtgtc 158267
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>ref|XM_718945.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03832)
            partial mRNA
          Length = 9161

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tataaaaaggaaaataaaaa 141
            ||||||||||||||||||||
Sbjct: 2209 tataaaaaggaaaataaaaa 2228
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>gb|AC073318.8| Homo sapiens BAC clone RP11-266F12 from 7, complete sequence
          Length = 162460

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 123    ataaaaaggaaaataaaaactcat 146
              ||||||| ||||||||||||||||
Sbjct: 109917 ataaaaatgaaaataaaaactcat 109894
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>ref|XM_739823.1| Plasmodium chabaudi chabaudi asparagine/aspartate rich protein,
           (PC000730.00.0) partial mRNA
          Length = 4368

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 tataaaaaggaaaataaaaa 141
           ||||||||||||||||||||
Sbjct: 310 tataaaaaggaaaataaaaa 329
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>ref|XM_737112.1| Plasmodium chabaudi chabaudi geranylgeranyl transferase type2 beta
           subunit (PC000229.05.0) partial mRNA
          Length = 1311

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 121 ttataaaaaggaaaataaaa 140
           ||||||||||||||||||||
Sbjct: 270 ttataaaaaggaaaataaaa 289
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>ref|XM_673784.1| Plasmodium berghei strain ANKA asparagine/aspartate rich protein
            (PB000094.01.0) partial mRNA
          Length = 6246

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tataaaaaggaaaataaaaa 141
            ||||||||||||||||||||
Sbjct: 2002 tataaaaaggaaaataaaaa 2021
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>gb|AC153643.22| Medicago truncatula clone mth2-109d3, complete sequence
          Length = 114250

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 135   ataaaaactcatcacattttgctg 158
             ||||||||||||| ||||||||||
Sbjct: 51747 ataaaaactcatctcattttgctg 51724
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>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence
          Length = 283075

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   ataaaaaggaaaataaaaac 142
             ||||||||||||||||||||
Sbjct: 83018 ataaaaaggaaaataaaaac 83037
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>emb|AL356000.13| Human DNA sequence from clone RP11-296P7 on chromosome 9 Contains a
             proteasome (prosome, macropain) 26S subunit, ATPase, 3
             (PSMC3) (TBP1) pseudogene, the 3' end of a novel gene
             similar to mouse RIKEN cDNA 4930500O09 gene, the gene for 
             Ras-related GTP-binding protein (RAGA) (FIP-1), the 3' end
             of a novel gene (FLJ20060) (contains FLJ2902, KIAA1574)
             and a CpG island, complete sequence
          Length = 89177

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aaggaaaataaaaactcatc 147
             ||||||||||||||||||||
Sbjct: 11495 aaggaaaataaaaactcatc 11514
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>emb|AL356252.10| Human DNA sequence from clone RP11-468L10 on chromosome 13, complete
             sequence
          Length = 143690

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tttataaaaaggaaaataaa 139
             ||||||||||||||||||||
Sbjct: 63033 tttataaaaaggaaaataaa 63052
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>emb|AL354722.10| Human DNA sequence from clone RP11-744O14 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 126045

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ataaaaaggaaaataaaaac 142
             ||||||||||||||||||||
Sbjct: 54313 ataaaaaggaaaataaaaac 54294
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>emb|AL161787.13| Human DNA sequence from clone RP11-40C6 on chromosome 9 Contains the 5'
             end of the DAPK1 gene for death-associated protein kinase
             1, a ribosomal protein S29 (RPS29) pseudogene, part of a
             novel gene and a CpG island, complete sequence
          Length = 119811

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    caaagttatgcacatatttt 73
             ||||||||||||||||||||
Sbjct: 10299 caaagttatgcacatatttt 10318
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>emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D16 on chromosome 6q26-27 Contains
             part of the gene for smooth muscle cell associated protein
             2 (SMAP2) or secreted modular calcium binding protein 2
             (SMOC2) and two CpG islands, complete sequence
          Length = 110603

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    aagttatgcacatatttttg 75
             ||||||||||||||||||||
Sbjct: 60854 aagttatgcacatatttttg 60835
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>emb|AL096707.13|HSJ729N16 Human DNA sequence from clone RP4-729N16 on chromosome 10, complete
            sequence
          Length = 154469

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  tataaaaaggaaaataaaaa 141
            ||||||||||||||||||||
Sbjct: 6184 tataaaaaggaaaataaaaa 6165
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 255     cgaaaatgccggtgagcgcgtaggcgatggcg 286
               ||||| ||||||||||||| ||| ||||||||
Sbjct: 1541170 cgaaattgccggtgagcgcatagtcgatggcg 1541139
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>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence
          Length = 1089401

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    ttttgctgctgttgctgtat 170
              ||||||||||||||||||||
Sbjct: 491416 ttttgctgctgttgctgtat 491397
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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    cgaaaatgccggtgagcgcg 274
              ||||||||||||||||||||
Sbjct: 327016 cgaaaatgccggtgagcgcg 327035
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>gb|AC131968.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0053D03, complete sequence
          Length = 150496

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tgctgttgctgtatgcctgt 176
             ||||||||||||||||||||
Sbjct: 13550 tgctgttgctgtatgcctgt 13531
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>emb|CR388096.8| Zebrafish DNA sequence from clone DKEY-146L2 in linkage group 5,
             complete sequence
          Length = 139460

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   taaaaaggaaaataaaaact 143
             ||||||||||||||||||||
Sbjct: 40198 taaaaaggaaaataaaaact 40217
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>gb|AC132032.1| Homo sapiens 3 BAC RP11-4H14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 106938

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   tcttttataaaaaggaaaataaaa 140
             |||||||| |||||||||||||||
Sbjct: 50093 tcttttatgaaaaggaaaataaaa 50116
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>emb|BX511062.12| Zebrafish DNA sequence from clone CH211-266M11 in linkage group 17,
             complete sequence
          Length = 131970

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    caaagttatgcacatatttt 73
             ||||||||||||||||||||
Sbjct: 37826 caaagttatgcacatatttt 37807
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>gb|AF009630.1| Bacteriophage bIL170, complete genome
          Length = 31754

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tataaaaaggaaaataaaaa 141
            ||||||||||||||||||||
Sbjct: 8819 tataaaaaggaaaataaaaa 8838
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>emb|CR624797.1| full-length cDNA clone CS0DF025YK19 of Fetal brain of Homo sapiens
           (human)
          Length = 1204

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 118 cttttataaaaaggaaaata 137
           ||||||||||||||||||||
Sbjct: 591 cttttataaaaaggaaaata 572
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>dbj|AK094969.1| Homo sapiens cDNA FLJ37650 fis, clone BRHIP2000553, weakly similar to
            UBIQUITIN-ACTIVATING ENZYME E1 1
          Length = 2388

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  cttttataaaaaggaaaata 137
            ||||||||||||||||||||
Sbjct: 1780 cttttataaaaaggaaaata 1761
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>gb|AC010996.9| Homo sapiens chromosome 10 clone RP11-118J22, complete sequence
          Length = 169512

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     tttttgttgggaaattttgc 89
              ||||||||||||||||||||
Sbjct: 105892 tttttgttgggaaattttgc 105873
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>gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0053D03, from chromosome 10, complete sequence
          Length = 199113

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   tgctgttgctgtatgcctgt 176
             ||||||||||||||||||||
Sbjct: 46451 tgctgttgctgtatgcctgt 46470
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>gb|AC092612.3| Homo sapiens BAC clone RP11-174F8 from 4, complete sequence
          Length = 145706

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   ttttgctgctgttgctgtat 170
             ||||||||||||||||||||
Sbjct: 34011 ttttgctgctgttgctgtat 33992
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 157     tgctgttgctgtatgcctgt 176
               ||||||||||||||||||||
Sbjct: 8210028 tgctgttgctgtatgcctgt 8210009
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>gb|AC008350.4|AC008350 Drosophila melanogaster, chromosome 2R, region 58E-59A, BAC clone
             BACR11M08, complete sequence
          Length = 169534

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ataaaaaggaaaataaaaac 142
             ||||||||||||||||||||
Sbjct: 96233 ataaaaaggaaaataaaaac 96214
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>gb|AC096720.3| Homo sapiens BAC clone RP11-17P16 from 4, complete sequence
          Length = 68362

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   cttttataaaaaggaaaata 137
             ||||||||||||||||||||
Sbjct: 63784 cttttataaaaaggaaaata 63803
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>gb|AC092584.2| Homo sapiens BAC clone RP11-20H7 from 2, complete sequence
          Length = 159035

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    aaaggaaaataaaaactcat 146
              ||||||||||||||||||||
Sbjct: 109548 aaaggaaaataaaaactcat 109529
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>gb|AC104781.4| Homo sapiens BAC clone RP11-30C22 from 2, complete sequence
          Length = 109843

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 120   tttataaaaaggaaaataaaaact 143
             |||||||||||||||||| |||||
Sbjct: 28100 tttataaaaaggaaaatataaact 28077
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>gb|AC079245.35| Mus musculus strain C57BL/6J chromosome 9 clone rp23-426k2, complete
             sequence
          Length = 213098

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   tttataaaaaggaaaataaa 139
             ||||||||||||||||||||
Sbjct: 87451 tttataaaaaggaaaataaa 87432
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>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1142C05
          Length = 151457

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ttataaaaaggaaaataaaa 140
             ||||||||||||||||||||
Sbjct: 95712 ttataaaaaggaaaataaaa 95731
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>gb|AC135964.2| Mus musculus BAC clone RP23-306G18 from chromosome 16, complete
             sequence
          Length = 179599

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tttataaaaaggaaaataaa 139
             ||||||||||||||||||||
Sbjct: 73159 tttataaaaaggaaaataaa 73178
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>gb|AC142113.2| Mus musculus BAC clone RP23-444K20 from chromosome 9, complete sequence
          Length = 188724

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 115    attcttttataaaaaggaaaataa 138
              |||||||||||||| |||||||||
Sbjct: 133541 attcttttataaaagggaaaataa 133564
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    tataaaaaggaaaataaaaa 141
              ||||||||||||||||||||
Sbjct: 986610 tataaaaaggaaaataaaaa 986591
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>gb|AF235093.1|AF235093 Homo sapiens chromosome 21 map 21q21 clone PAC P704-39J11, complete
             sequence
          Length = 161121

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   aaaaaggaaaataaaaactc 144
             ||||||||||||||||||||
Sbjct: 19135 aaaaaggaaaataaaaactc 19116
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>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0701D05
          Length = 172161

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    tgctgttgctgtatgcctgt 176
              ||||||||||||||||||||
Sbjct: 118640 tgctgttgctgtatgcctgt 118621
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>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OJ1276_B06
          Length = 175174

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  tgctgttgctgtatgcctgt 176
            ||||||||||||||||||||
Sbjct: 8338 tgctgttgctgtatgcctgt 8319
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>dbj|BS000022.1| Pan troglodytes chromosome 22 clone:PTB-131J13, map 22, complete
             sequences
          Length = 214189

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   aaaaaggaaaataaaaactc 144
             ||||||||||||||||||||
Sbjct: 47670 aaaaaggaaaataaaaactc 47651
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>dbj|BS000021.1| Pan troglodytes chromosome 22 clone:PTB-141K15, map 22, complete
              sequences
          Length = 183533

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    aaaaaggaaaataaaaactc 144
              ||||||||||||||||||||
Sbjct: 153515 aaaaaggaaaataaaaactc 153496
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>emb|AL163210.2|HS21C010 Homo sapiens chromosome 21 segment HS21C010
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    aaaaaggaaaataaaaactc 144
              ||||||||||||||||||||
Sbjct: 222898 aaaaaggaaaataaaaactc 222879
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>gb|AE003458.3| Drosophila melanogaster chromosome 2R, section 66 of 73 of the complete
              sequence
          Length = 302225

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    ataaaaaggaaaataaaaac 142
              ||||||||||||||||||||
Sbjct: 106715 ataaaaaggaaaataaaaac 106696
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>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0028E10
          Length = 140791

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tgctgttgctgtatgcctgt 176
             ||||||||||||||||||||
Sbjct: 27030 tgctgttgctgtatgcctgt 27011
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 157     tgctgttgctgtatgcctgt 176
               ||||||||||||||||||||
Sbjct: 8215127 tgctgttgctgtatgcctgt 8215108
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>emb|AL357615.7|HS373D10 Homo sapiens chromosome 9 BAC RP11-373D10, complete sequence
          Length = 171446

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   tataaaaaggaaaataaaaa 141
             ||||||||||||||||||||
Sbjct: 42006 tataaaaaggaaaataaaaa 41987
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>emb|AL928841.6| Mouse DNA sequence from clone RP23-95M4 on chromosome 2, complete
             sequence
          Length = 48876

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   ataaaaaggaaaataaaaac 142
             ||||||||||||||||||||
Sbjct: 46343 ataaaaaggaaaataaaaac 46324
to top
>emb|AJ010598.1|HS135E14 Homo sapiens chromosome 21 PAC RPCIP704E14135Q2, complete sequence
          Length = 135855

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   aaaaaggaaaataaaaactc 144
             ||||||||||||||||||||
Sbjct: 93544 aaaaaggaaaataaaaactc 93525
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>emb|AL391667.19| Human DNA sequence from clone RP11-214L15 on chromosome 9, complete
            sequence
          Length = 110444

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  tataaaaaggaaaataaaaa 141
            ||||||||||||||||||||
Sbjct: 9323 tataaaaaggaaaataaaaa 9304
to top
>gb|AC102164.7| Mus musculus chromosome 3, clone RP23-438M14, complete sequence
          Length = 184952

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   ttttgctgctgttgctgtat 170
             ||||||||||||||||||||
Sbjct: 83683 ttttgctgctgttgctgtat 83664
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>gb|AC140979.17| Mus musculus chromosome 1, clone RP23-307M11, complete sequence
          Length = 209748

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    tcttttataaaaaggaaaataaaa 140
              ||||||||||||||||||| ||||
Sbjct: 196631 tcttttataaaaaggaaaagaaaa 196654
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>dbj|AB009350.1| Citrus sinensis mRNA for chalcone synthase, complete cds, clone
            CitCHS1
          Length = 1481

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 116  ttcttttataaaaaggaaaataaa 139
            |||||||| |||||||||||||||
Sbjct: 1308 ttcttttagaaaaaggaaaataaa 1285


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,972,644
Number of Sequences: 3902068
Number of extensions: 3972644
Number of successful extensions: 150754
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 150336
Number of HSP's gapped (non-prelim): 418
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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