ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet57g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_474449.1| Oryza sativa (japonica cultivar-group), predic... 58 2e-05
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
3dbj|AK067667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
4tpe|BN000591.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 58 2e-05
5emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 58 2e-05
6ref|XM_474454.1| Oryza sativa (japonica cultivar-group), predic... 48 0.015
7ref|XM_474450.1| Oryza sativa (japonica cultivar-group), predic... 48 0.015
8emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 48 0.015
9dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
10dbj|AK070680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
11tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 48 0.015
12tpe|BN000592.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 48 0.015
13emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 48 0.015
14gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 42 0.91
15ref|XM_754706.1| Ustilago maydis 521 hypothetical protein (UM036... 42 0.91
16dbj|AB178018.1| Ralstonia solanacearum hpx24 gene for hypothetic... 42 0.91
17ref|XM_501984.1| Yarrowia lipolytica CLIB122, YALI0C18645g predi... 40 3.6
18gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 3.6
19emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 3.6
20emb|AJ538328.1|ECL538328 Enterobacter cloacae putative hemin upt... 40 3.6
21gb|AE005086.1| Halobacterium sp. NRC-1 section 117 of 170 of the... 40 3.6
22emb|AJ438168.1|HSA438168 Halobacterium salinarum basB gene for a... 40 3.6
23emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 3.6
24gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 3.6
25emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chr... 40 3.6

>ref|XM_474449.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1059

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 226 gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266
           |||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 969 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 929



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 226      gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266
                |||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 35250654 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 35250694



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 224      ctgaagcagctgcgacggatctcaccgacgtt 255
                |||||||||||||| |||||||| ||||||||
Sbjct: 35280772 ctgaagcagctgcggcggatctcgccgacgtt 35280803



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 224      ctgaagcagctgcgacggatctcaccgacgtt 255
                |||||||||||||| |||||||| ||||||||
Sbjct: 35258058 ctgaagcagctgcggcggatctcgccgacgtt 35258089



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>dbj|AK067667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118D03, full
            insert sequence
          Length = 1385

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 226  gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266
            |||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 1100 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 1060



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>tpe|BN000591.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx62 gene for
            class III peroxidase 62 precursor, exons 1-2
          Length = 1186

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 226  gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266
            |||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 1096 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 1056



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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 226   gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266
             |||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 46499 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 46539



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 224   ctgaagcagctgcgacggatctcaccgacgtt 255
             |||||||||||||| |||||||| ||||||||
Sbjct: 76617 ctgaagcagctgcggcggatctcgccgacgtt 76648



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 224   ctgaagcagctgcgacggatctcaccgacgtt 255
             |||||||||||||| |||||||| ||||||||
Sbjct: 53903 ctgaagcagctgcggcggatctcgccgacgtt 53934



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>ref|XM_474454.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1017

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255
           |||||||||||||| |||||||| ||||||||
Sbjct: 950 ctgaagcagctgcggcggatctcgccgacgtt 919



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>ref|XM_474450.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1008

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255
           |||||||||||||| |||||||| ||||||||
Sbjct: 950 ctgaagcagctgcggcggatctcgccgacgtt 919



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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 224   ctgaagcagctgcgacggatctcaccgacgtt 255
             |||||||||||||| |||||||| ||||||||
Sbjct: 75769 ctgaagcagctgcggcggatctcgccgacgtt 75738



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 224   ctgaagcagctgcgacggatctcaccgacgtt 255
             |||||||||||||| |||||||| ||||||||
Sbjct: 72462 ctgaagcagctgcggcggatctcgccgacgtt 72431



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>dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030A01, full
            insert sequence
          Length = 1240

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 224  ctgaagcagctgcgacggatctcaccgacgtt 255
            |||||||||||||| |||||||| ||||||||
Sbjct: 1016 ctgaagcagctgcggcggatctcgccgacgtt 985



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>dbj|AK070680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060N16, full
           insert sequence
          Length = 2256

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255
           |||||||||||||| |||||||| ||||||||
Sbjct: 975 ctgaagcagctgcggcggatctcgccgacgtt 944



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>tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx64 gene for
            class III peroxidase 64 precursor, exons 1-2
          Length = 1091

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 224  ctgaagcagctgcgacggatctcaccgacgtt 255
            |||||||||||||| |||||||| ||||||||
Sbjct: 1024 ctgaagcagctgcggcggatctcgccgacgtt 993



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>tpe|BN000592.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx63 gene for
            class III peroxidase 63 precursor, exons 1-2
          Length = 1098

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 224  ctgaagcagctgcgacggatctcaccgacgtt 255
            |||||||||||||| |||||||| ||||||||
Sbjct: 1040 ctgaagcagctgcggcggatctcgccgacgtt 1009



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>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 224   ctgaagcagctgcgacggatctcaccgacgtt 255
             |||||||||||||| |||||||| ||||||||
Sbjct: 81278 ctgaagcagctgcggcggatctcgccgacgtt 81309



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 184    ggcgtcgacgacggtgtcgatggcgcgccgggc 216
              |||||||| |||| |||||||||||||| ||||
Sbjct: 309971 ggcgtcgatgacgttgtcgatggcgcgctgggc 310003



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>ref|XM_754706.1| Ustilago maydis 521 hypothetical protein (UM03652.1) partial mRNA
          Length = 1404

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 188 tcgacgacggtgtcgatggcg 208
           |||||||||||||||||||||
Sbjct: 175 tcgacgacggtgtcgatggcg 195



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>dbj|AB178018.1| Ralstonia solanacearum hpx24 gene for hypothetical protein, complete
            cds
          Length = 6913

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 195  cggtgtcgatggcgcgccggg 215
            |||||||||||||||||||||
Sbjct: 5827 cggtgtcgatggcgcgccggg 5807



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>ref|XM_501984.1| Yarrowia lipolytica CLIB122, YALI0C18645g predicted mRNA
          Length = 2925

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  gaagcagctgcgacggatct 245
            ||||||||||||||||||||
Sbjct: 2788 gaagcagctgcgacggatct 2769



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 141     gacatcaagcggatgccgcg 160
               ||||||||||||||||||||
Sbjct: 4721213 gacatcaagcggatgccgcg 4721194



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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    gacatcaagcggatgccgcg 160
              ||||||||||||||||||||
Sbjct: 152255 gacatcaagcggatgccgcg 152236



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>emb|AJ538328.1|ECL538328 Enterobacter cloacae putative hemin uptake system (ehuPASTUV genes),
            strain Z-2376
          Length = 10269

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 238  acggatctcaccgacgttgccgcc 261
            ||||||| ||||||||||||||||
Sbjct: 3380 acggatcacaccgacgttgccgcc 3403



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>gb|AE005086.1| Halobacterium sp. NRC-1 section 117 of 170 of the complete genome
          Length = 11548

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 188  tcgacgacggtgtcgatggcgcgc 211
            |||||| |||||||||||||||||
Sbjct: 1338 tcgacggcggtgtcgatggcgcgc 1361



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>emb|AJ438168.1|HSA438168 Halobacterium salinarum basB gene for amino acid binding protein
          Length = 1242

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 188 tcgacgacggtgtcgatggcgcgc 211
           |||||| |||||||||||||||||
Sbjct: 191 tcgacggcggtgtcgatggcgcgc 168



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 226     gaagcagctgcgacggatct 245
               ||||||||||||||||||||
Sbjct: 2560071 gaagcagctgcgacggatct 2560052



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>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940127D9, complete sequence
          Length = 102832

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 149   gcggatgccgcgaagccctcctcg 172
             ||||||||||||||| ||||||||
Sbjct: 52759 gcggatgccgcgaagacctcctcg 52736



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>emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chromosome 4, complete
              sequence
          Length = 203992

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ggaaaagcctttttgcttat 20
              ||||||||||||||||||||
Sbjct: 191908 ggaaaagcctttttgcttat 191927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,708,077
Number of Sequences: 3902068
Number of extensions: 1708077
Number of successful extensions: 36272
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36130
Number of HSP's gapped (non-prelim): 142
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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