| Clone Name | rbaet57g01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474449.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1059 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 226 gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266 |||||||||||| |||||||| |||||||| |||||||||| Sbjct: 969 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 929
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 226 gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266 |||||||||||| |||||||| |||||||| |||||||||| Sbjct: 35250654 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 35250694 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Plus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 35280772 ctgaagcagctgcggcggatctcgccgacgtt 35280803 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Plus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 35258058 ctgaagcagctgcggcggatctcgccgacgtt 35258089
>dbj|AK067667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118D03, full insert sequence Length = 1385 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 226 gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266 |||||||||||| |||||||| |||||||| |||||||||| Sbjct: 1100 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 1060
>tpe|BN000591.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx62 gene for class III peroxidase 62 precursor, exons 1-2 Length = 1186 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 226 gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266 |||||||||||| |||||||| |||||||| |||||||||| Sbjct: 1096 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 1056
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 226 gaagcagctgcgacggatctcaccgacgttgccgccgggcc 266 |||||||||||| |||||||| |||||||| |||||||||| Sbjct: 46499 gaagcagctgcggcggatctcgccgacgttcccgccgggcc 46539 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Plus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 76617 ctgaagcagctgcggcggatctcgccgacgtt 76648 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Plus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 53903 ctgaagcagctgcggcggatctcgccgacgtt 53934
>ref|XM_474454.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1017 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Minus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 950 ctgaagcagctgcggcggatctcgccgacgtt 919
>ref|XM_474450.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1008 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Minus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 950 ctgaagcagctgcggcggatctcgccgacgtt 919
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Minus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 75769 ctgaagcagctgcggcggatctcgccgacgtt 75738 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Minus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 72462 ctgaagcagctgcggcggatctcgccgacgtt 72431
>dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030A01, full insert sequence Length = 1240 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Minus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 1016 ctgaagcagctgcggcggatctcgccgacgtt 985
>dbj|AK070680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060N16, full insert sequence Length = 2256 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Minus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 975 ctgaagcagctgcggcggatctcgccgacgtt 944
>tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx64 gene for class III peroxidase 64 precursor, exons 1-2 Length = 1091 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Minus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 1024 ctgaagcagctgcggcggatctcgccgacgtt 993
>tpe|BN000592.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx63 gene for class III peroxidase 63 precursor, exons 1-2 Length = 1098 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Minus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 1040 ctgaagcagctgcggcggatctcgccgacgtt 1009
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Plus Query: 224 ctgaagcagctgcgacggatctcaccgacgtt 255 |||||||||||||| |||||||| |||||||| Sbjct: 81278 ctgaagcagctgcggcggatctcgccgacgtt 81309
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 0.91 Identities = 30/33 (90%) Strand = Plus / Plus Query: 184 ggcgtcgacgacggtgtcgatggcgcgccgggc 216 |||||||| |||| |||||||||||||| |||| Sbjct: 309971 ggcgtcgatgacgttgtcgatggcgcgctgggc 310003
>ref|XM_754706.1| Ustilago maydis 521 hypothetical protein (UM03652.1) partial mRNA Length = 1404 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tcgacgacggtgtcgatggcg 208 ||||||||||||||||||||| Sbjct: 175 tcgacgacggtgtcgatggcg 195
>dbj|AB178018.1| Ralstonia solanacearum hpx24 gene for hypothetical protein, complete cds Length = 6913 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 cggtgtcgatggcgcgccggg 215 ||||||||||||||||||||| Sbjct: 5827 cggtgtcgatggcgcgccggg 5807
>ref|XM_501984.1| Yarrowia lipolytica CLIB122, YALI0C18645g predicted mRNA Length = 2925 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gaagcagctgcgacggatct 245 |||||||||||||||||||| Sbjct: 2788 gaagcagctgcgacggatct 2769
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gacatcaagcggatgccgcg 160 |||||||||||||||||||| Sbjct: 4721213 gacatcaagcggatgccgcg 4721194
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gacatcaagcggatgccgcg 160 |||||||||||||||||||| Sbjct: 152255 gacatcaagcggatgccgcg 152236
>emb|AJ538328.1|ECL538328 Enterobacter cloacae putative hemin uptake system (ehuPASTUV genes), strain Z-2376 Length = 10269 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 acggatctcaccgacgttgccgcc 261 ||||||| |||||||||||||||| Sbjct: 3380 acggatcacaccgacgttgccgcc 3403
>gb|AE005086.1| Halobacterium sp. NRC-1 section 117 of 170 of the complete genome Length = 11548 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 tcgacgacggtgtcgatggcgcgc 211 |||||| ||||||||||||||||| Sbjct: 1338 tcgacggcggtgtcgatggcgcgc 1361
>emb|AJ438168.1|HSA438168 Halobacterium salinarum basB gene for amino acid binding protein Length = 1242 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 tcgacgacggtgtcgatggcgcgc 211 |||||| ||||||||||||||||| Sbjct: 191 tcgacggcggtgtcgatggcgcgc 168
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 gaagcagctgcgacggatct 245 |||||||||||||||||||| Sbjct: 2560071 gaagcagctgcgacggatct 2560052
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940127D9, complete sequence Length = 102832 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gcggatgccgcgaagccctcctcg 172 ||||||||||||||| |||||||| Sbjct: 52759 gcggatgccgcgaagacctcctcg 52736
>emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chromosome 4, complete sequence Length = 203992 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggaaaagcctttttgcttat 20 |||||||||||||||||||| Sbjct: 191908 ggaaaagcctttttgcttat 191927 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,708,077 Number of Sequences: 3902068 Number of extensions: 1708077 Number of successful extensions: 36272 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36130 Number of HSP's gapped (non-prelim): 142 length of query: 277 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 255 effective length of database: 17,147,199,772 effective search space: 4372535941860 effective search space used: 4372535941860 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)