ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet57c03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001036402.1| Arabidopsis thaliana O-acetyltransferase AT2G34410 transcript variant AT2G34410.3 mRNA, complete cds Length = 3299 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Plus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 2490 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 2530
>ref|NM_001036401.1| Arabidopsis thaliana O-acetyltransferase AT2G34410 transcript variant AT2G34410.2 mRNA, complete cds Length = 3338 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Plus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 2490 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 2530
>ref|NM_128994.2| Arabidopsis thaliana LHB1B2; chlorophyll binding AT2G34420 (LHB1B2) transcript variant AT2G34420.1 mRNA, complete cds Length = 1354 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 848 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 808
>ref|NM_179900.1| Arabidopsis thaliana LHB1B2 AT2G34420 (LHB1B2) transcript variant AT2G34420.2 mRNA, complete cds Length = 1312 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 806 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 766
>gb|DQ226825.1| Boechera divaricarpa isolate SLW-B-H09 mRNA sequence Length = 775 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 627 ttccggggacgaagttggtggcgaaggcccatgcgttgttg 587
>emb|X16436.1|SACAB Mustard cab gene for chlorophyll a/b-binding protein Length = 2774 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 2371 ttccggggacgaagttggtggcgaaggcccatgcgttgttg 2331
>gb|AY142513.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34420) mRNA, complete cds Length = 829 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 793 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 753
>gb|AY045806.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34420) mRNA, complete cds Length = 1015 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 848 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 808
>gb|AC004481.3| Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence Length = 112763 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Plus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 93208 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 93248 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 96100 ttccggggacgaagttggtagcgaaggcccatgcattgttg 96060
>gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence Length = 93060 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 80994 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 80954 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 78102 ttccggggacgaagttggtagcgaaggcccatgcattgttg 78142
>gb|AY081587.1| Arabidopsis thaliana photosystem II type I chlorophyll a/b binding protein (At2g34420) mRNA, complete cds Length = 883 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 793 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 753
>gb|AY079110.1| Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 798 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 793 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 753
>gb|AY079101.1| Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 798 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 793 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 753
>gb|AY065125.1| Arabidopsis thaliana photosystem II type I chlorophyll a/b binding protein (At2g34420; T31E10.24) mRNA, complete cds Length = 969 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 844 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 804
>gb|AF419587.1|AF419587 Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 969 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 844 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 804
>gb|AF419548.1|AF419548 Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 969 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 844 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 804
>gb|AF428397.1|AF428397 Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 1024 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 844 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 804
>gb|AY039561.1| Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 995 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 844 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 804
>gb|AF372886.1|AF372886 Arabidopsis thaliana At2g34420/T31E10.24 mRNA, complete cds Length = 969 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 844 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 804
>emb|BX821952.1|CNS0AABH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL87ZD09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 949 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 825 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 785
>emb|BX819530.1|CNS0A9V8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB87ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 291 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 164 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 124
>emb|BX820019.1|CNS0A9C1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZC05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 903 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 825 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 785
>emb|BX820007.1|CNS0A9CM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS5ZF09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 885 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 828 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 788
>emb|BX822910.1|CNS0A63G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB71ZG07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 919 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Plus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 91 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 131
>emb|X15894.1|SACAB1 Sinapsis alba cab-1 gene for chlorophyll a/b-binding polypeptide Length = 2775 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 2372 ttccggggacgaagttggtggcgaaggcccatgcgttgttg 2332
>emb|X64460.1|ATLH1B2 A.thaliana Lhb1B2 gene for photosystem II chlorophyll a/b binding protein Length = 1405 Score = 65.9 bits (33), Expect = 3e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||||||||||| ||||||||| Sbjct: 1093 ttccggggacgaagttggtggcgaaggcccaagcgttgttg 1053
>gb|L23107.1|GBICABBP Ginkgo biloba nuclear-encoded chloroplast chlorophyll a/b binding protein mRNA, complete cds Length = 997 Score = 61.9 bits (31), Expect = 5e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||||||||||| ||||||||| Sbjct: 864 ccggggacgaagttggtggcgaaggcccaggcgttgttg 826
>gb|M29334.1|LGILHCPABP L.gibba light-harvesting chlorophyll a/b protein gene, complete cds Length = 1633 Score = 61.9 bits (31), Expect = 5e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||||||||||| ||||||||| Sbjct: 1188 ccggggacgaagttggtggcgaaggcccaggcgttgttg 1150
>gb|M12152.1|LGIAB19A Lemna gibba chlorophyll a/b apoprotein gene, complete cds Length = 1913 Score = 61.9 bits (31), Expect = 5e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||||||||||| ||||||||| Sbjct: 1527 ccggggacgaagttggtggcgaaggcccaggcgttgttg 1489
>emb|BX821505.1|CNS0A93G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL46ZF04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 959 Score = 58.0 bits (29), Expect = 7e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||| ||||||| ||||||||| Sbjct: 835 ttccggggacgaagttggtggcggaggcccaagcgttgttg 795
>gb|AF139467.2|AF139467 Vigna radiata LHCII type I chlorophyll a/b binding protein (CipLhcb1) mRNA, complete cds; nuclear gene for chloroplast product Length = 975 Score = 58.0 bits (29), Expect = 7e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||||||| ||||||| ||||||||| Sbjct: 845 ttccggggacgaagttggtggcgtaggcccaggcgttgttg 805
>emb|X16647.1|RSCHABBP Radish mRNA for chlorophyll a/b binding protein of photosystem II Length = 518 Score = 58.0 bits (29), Expect = 7e-06 Identities = 38/41 (92%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| ||||||||| Sbjct: 370 ttccggggacgaagttggtagcgaaggcccatgcgttgttg 330
>gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds Length = 1044 Score = 56.0 bits (28), Expect = 3e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 112 cgaagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||||| ||||||||| Sbjct: 850 cgaagttggtggcgaaggcccaggcgttgttg 819
>dbj|AB211497.1| Lemna paucicostata LpCAB1 mRNA for CAB homologue1, partial cds Length = 695 Score = 56.0 bits (28), Expect = 3e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 112 cgaagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||||| ||||||||| Sbjct: 695 cgaagttggtggcgaaggcccaggcgttgttg 664
>ref|NM_191799.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 798 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 791 ccggggacgaagttggtggcgtaggcccatgcgttgttg 753
>ref|NM_192636.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 789 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 779 ccggggacgaagttggtggcgtaggcccaggcgttgttg 741
>emb|X53398.1|ZMCABM7 Z.mays cab-m7 gene for light harvesting chlorophyll a/b binding protein Length = 2261 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 1803 ccggggacgaagttggtggcgtaggcccaagcgttgttg 1765
>emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chlorophyll a/b-binding protein Length = 1664 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 1240 ccggggacgaagttggtggcgtaggcccaggcgttgttg 1202
>gb|AY100470.1| Oryza sativa (indica cultivar-group) putative soluble starch synthase IV-1 gene, complete cds Length = 15000 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 13883 ccggggacgaagttggtggcgtaggcccatgcgttgttg 13921
>gb|S73603.1| Pinus thunbergii chlorophyll a/b-binding protein (LHCPII) mRNA, complete cds Length = 998 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 857 ccggggacgaagttggtggcgtaggcccaggcgttgttg 819
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 30025128 ccggggacgaagttggtggcgtaggcccatgcgttgttg 30025090 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 23604322 ccggggacgaagttggtggcgtaggcccaggcgttgttg 23604284
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 21118 ccggggacgaagttggtggcgtaggcccatgcgttgttg 21080
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518F01 Length = 154541 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 67021 ccggggacgaagttggtggcgtaggcccaggcgttgttg 66983
>dbj|AK121563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J10, full insert sequence Length = 1180 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 850 ccggggacgaagttggtggcgtaggcccaggcgttgttg 812
>dbj|AK119173.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B06, full insert sequence Length = 1126 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 849 ccggggacgaagttggtggcgtaggcccaggcgttgttg 811
>emb|Y00379.1|ZMLHCP Maize mRNA for light-harvesting chlorophyll a/b binding protein LHCP Length = 967 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 855 ccggggacgaagttggtggcgtaggcccaagcgttgttg 817
>emb|X13909.1|OSCABR2 Rice cab2R gene for light harvesting chlorophyll a/b-binding protein Length = 1442 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 1279 ccggggacgaagttggtggcgtaggcccaggcgttgttg 1241
>emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding protein Length = 2100 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 1673 ccggggacgaagttggtggcgtaggcccatgcgttgttg 1635
>emb|X14506.1|PSCABIIB Pinus sylvestris cab II/1B mRNA for chlorophyll a/b-binding protein Length = 1006 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 866 ccggggacgaagttggtggcgtaggcccaggcgttgttg 828
>emb|X12735.1|HVCAB2 Barley Cab-2 gene for major light-harvesting chlorophyll a/b- binding protein ( LHCP ) Length = 1030 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||||||||||| || |||||| Sbjct: 968 ccggggacgaagttggtggcgaaggcccaggcattgttg 930
>dbj|AK104176.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C12, full insert sequence Length = 1055 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 872 ccggggacgaagttggtggcgtaggcccatgcgttgttg 834
>dbj|AK103946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B02, full insert sequence Length = 1055 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 872 ccggggacgaagttggtggcgtaggcccatgcgttgttg 834
>dbj|AK062725.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-D08, full insert sequence Length = 1057 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 874 ccggggacgaagttggtggcgtaggcccatgcgttgttg 836
>dbj|AK061619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-E02, full insert sequence Length = 650 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 379 ccggggacgaagttggtggcgtaggcccaggcgttgttg 341
>dbj|AK058312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H12, full insert sequence Length = 1040 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 857 ccggggacgaagttggtggcgtaggcccatgcgttgttg 819
>dbj|AK058289.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E06, full insert sequence Length = 1057 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 874 ccggggacgaagttggtggcgtaggcccatgcgttgttg 836
>gb|AY109324.1| Zea mays CL187_1 mRNA sequence Length = 2262 Score = 54.0 bits (27), Expect = 1e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| ||||||||| Sbjct: 1803 ccggggacgaagttggtggcgtaggcccaagcgttgttg 1765
>ref|NM_102733.2| Arabidopsis thaliana CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding AT1G29930 (CAB1) mRNA, complete cds Length = 1044 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 854 aagttggtggcgaaggcccatgcgttgttg 825
>gb|DQ226787.1| Boechera divaricarpa isolate SLW-B-B06 mRNA sequence Length = 827 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 616 aagttggtggcgaaggcccatgcgttgttg 587
>gb|AY091169.1| Arabidopsis thaliana putative chlorophyll a/b-binding protein (At1g29930) mRNA, complete cds Length = 835 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 788 aagttggtggcgaaggcccatgcgttgttg 759
>gb|AY050935.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At1g29930) mRNA, complete cds Length = 1014 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 854 aagttggtggcgaaggcccatgcgttgttg 825
>gb|AY058180.1| Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds Length = 1019 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 854 aagttggtggcgaaggcccatgcgttgttg 825
>gb|AF428359.1|AF428359 Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds Length = 1045 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 854 aagttggtggcgaaggcccatgcgttgttg 825
>gb|AY045673.1| Arabidopsis thaliana At1g29930/F1N18_23 mRNA, complete cds Length = 999 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 854 aagttggtggcgaaggcccatgcgttgttg 825
>emb|BX814964.1|CNS0AE8Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZE02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 307 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 158 aagttggtggcgaaggcccatgcgttgttg 129
>emb|BX815726.1|CNS0ACD7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS89ZA03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 930 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 823 aagttggtggcgaaggcccatgcgttgttg 794
>gb|AC022455.5|AC022455 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence Length = 82053 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 734 aagttggtggcgaaggcccatgcgttgttg 705
>gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence Length = 101075 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 16127 aagttggtggcgaaggcccatgcgttgttg 16156 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||| ||||||||||| ||||||||| Sbjct: 22526 aagttggttgcgaaggcccatgcgttgttg 22497 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 19880 aagttggtggcaaaggcccaagcgttgttg 19851
>emb|X03909.1|ATLHCP3 A.thaliana gene (LHCP AB 140) for chlorophyll a/b binding protein Length = 1109 Score = 52.0 bits (26), Expect = 5e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||| ||||||||| Sbjct: 1005 aagttggtggcgaaggcccatgcgttgttg 976
>ref|NM_128995.2| Arabidopsis thaliana LHB1B1; chlorophyll binding AT2G34430 (LHB1B1) mRNA, complete cds Length = 1008 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 858 ttccggggacgaagttggtagcgaaggcccatgcattgttg 818
>gb|AC139600.16| Medicago truncatula clone mth2-20m4, complete sequence Length = 124732 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| | ||||| |||||||||||||| ||||||||| Sbjct: 8576 ttccggggacaaagtttgtggcgaaggcccaagcgttgttg 8616
>gb|AF339687.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34430) mRNA, complete cds Length = 851 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 796 ttccggggacgaagttggtagcgaaggcccatgcattgttg 756
>gb|AF326864.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein (At2g34430) mRNA, complete cds Length = 1019 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 858 ttccggggacgaagttggtagcgaaggcccatgcattgttg 818
>gb|AY120776.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein. (At2g34430) mRNA, complete cds Length = 1003 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 858 ttccggggacgaagttggtagcgaaggcccatgcattgttg 818
>gb|AF458406.1|AF458406 Brassica oleracea chlorophyll a/b binding protein (CAB1) mRNA, complete cds Length = 980 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| ||||||||||||| |||||||| || |||||| Sbjct: 838 ttccggggacgaagttggtggcaaaggcccatgcattgttg 798
>gb|AF324693.2|AF324693 Arabidopsis thaliana At2g34430 (At2g34430/T31E10.23) mRNA, complete cds Length = 1009 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 864 ttccggggacgaagttggtagcgaaggcccatgcattgttg 824
>emb|BX819881.1|CNS0AA6O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS41ZH03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 638 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 516 ttccggggacgaagttggtagcgaaggcccatgcattgttg 476
>emb|BX821638.1|CNS0A92F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL5ZG08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 911 Score = 50.1 bits (25), Expect = 0.002 Identities = 38/41 (92%), Gaps = 1/41 (2%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||| ||||||||||||||||| ||||||||| Sbjct: 827 ttccggggacgaa-ttggtggcgaaggcccaagcgttgttg 788
>gb|AY086307.1| Arabidopsis thaliana clone 23727 mRNA, complete sequence Length = 979 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 858 ttccggggacgaagttggtagcgaaggcccatgcattgttg 818
>emb|X64459.1|ATLHB1B1 A.thaliana Lhb1B1 gene for photosystem II type I chlorophyll a/b binding protein Length = 1301 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 1096 ttccggggacgaagttggtagcgaaggcccatgcattgttg 1056
>emb|X12981.1|GMCAB3 Soybean Cab3 gene for PSII LHCII chlorophyll a/b binding protein Length = 1361 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| ||||||||||||| ||||||| ||||||||| Sbjct: 1037 ttccggggacgaagttggtggcataggcccaggcgttgttg 997
>gb|BT002103.1| Arabidopsis thaliana putative photosystem II type I chlorophyll a/b binding protein. (At2g34430) mRNA, complete cds Length = 853 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||||| |||||||||| ||||||||||| || |||||| Sbjct: 796 ttccggggacgaagttggtagcgaaggcccatgcattgttg 756
>dbj|AB026686.1| Physcomitrella patens mRNA for chlorophyll a/b-binding protein precursor, complete cds Length = 964 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 ||||||| |||||||||||||| ||||||| ||||||||| Sbjct: 841 ttccgggaacgaagttggtggcgtaggcccaggcgttgttg 801
>dbj|AB115772.1| Physcomitrella patens subsp. patens PpLhcb2 gene for light-harvesting chlorophyll a/b-binding protein 2, complete cds Length = 3125 Score = 48.1 bits (24), Expect = 0.007 Identities = 30/32 (93%) Strand = Plus / Minus Query: 112 cgaagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||| ||||||| ||||||||| Sbjct: 3010 cgaagttggtggcgtaggcccatgcgttgttg 2979
>gb|AF003127.1|AF003127 Mesembryanthemum crystallinum chlorophyll a/b-binding protein (CAB) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1042 Score = 48.1 bits (24), Expect = 0.007 Identities = 30/32 (93%) Strand = Plus / Minus Query: 112 cgaagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||||||||||| || |||||| Sbjct: 814 cgaagttggtggcgaaggcccaagcattgttg 783
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Plus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 78979 ccggggacgaagttggtggcgtatgcccaggcgttgttg 79017
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 21808837 ccggggacgaagttggtggcgtatgcccaggcgttgttg 21808799
>emb|AJ313013.1|PCO313013 Pinus contorta cab gene for chlorophyll a/b binding protein Length = 1197 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| ||||||||||||| ||||||| ||||||||| Sbjct: 881 ccggggacgaagttggtggcataggcccaggcgttgttg 843
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 10793775 ccggggacgaagttggtggcgtacgcccaggcgttgttg 10793737
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 21801866 ccggggacgaagttggtggcgtatgcccaggcgttgttg 21801828
>dbj|D00571.1|PYPLHABBP Pyrus pyrifolia var. culta mRNA for light harvesting a/b binding protein, complete cds Length = 1055 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| || |||||| Sbjct: 892 ccggggacgaagttggtggcgtaggcccaggcattgttg 854
>dbj|AB206466.1| Adiantum capillus-veneris AcCab1 gene for chlorophyll a/b-binding protein, complete cds Length = 1500 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 ||||||| ||||||||||||| | ||||| ||||||||| Sbjct: 1387 ccgggggtgaagttggtggcgtaagcccaggcgttgttg 1349
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 17498 ccggggacgaagttggtggcgtacgcccaggcgttgttg 17460
>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0085I16 Length = 141701 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 130393 ccggggacgaagttggtggcgtacgcccaggcgttgttg 130355
>emb|X63205.1|ZMCAB48 Zea mays cab48 gene for chlorophyll a/b binding protein precursor Length = 2780 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 2714 ccggggacgaagttggtggcgtaagcccaggcgttgttg 2676
>emb|X67714.1|PCCABA P.contorta cab gene for chlorophyll a/b binding protein Length = 2574 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| ||||||||||||| ||||||| ||||||||| Sbjct: 1959 ccggggacgaagttggtggcataggcccaggcgttgttg 1921
>dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G02, full insert sequence Length = 1013 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 843 ccggggacgaagttggtggcgtacgcccaggcgttgttg 805
>dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E05, full insert sequence Length = 1021 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 848 ccggggacgaagttggtggcgtacgcccaggcgttgttg 810
>dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D01, full insert sequence Length = 1056 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 850 ccggggacgaagttggtggcgtacgcccaggcgttgttg 812
>dbj|AK066762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075I09, full insert sequence Length = 1106 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 836 ccggggacgaagttggtggcgtatgcccaggcgttgttg 798
>dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E08, full insert sequence Length = 1235 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 848 ccggggacgaagttggtggcgtacgcccaggcgttgttg 810
>dbj|AK058315.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A06, full insert sequence Length = 685 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 411 ccggggacgaagttggtggcgtatgcccaggcgttgttg 373
>dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H02, full insert sequence Length = 1045 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 848 ccggggacgaagttggtggcgtacgcccaggcgttgttg 810
>gb|AF079590.1|AF079590 Sorghum bicolor photosystem II type II chlorophyll a/b binding protein (CABII) mRNA, partial cds Length = 714 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 571 ccggggacgaagttggtggcgtaagcccaggcgttgttg 533
>gb|AF061577.1|AF061577 Oryza sativa chlorophyll a/b binding protein (RCABP89) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1027 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 825 ccggggacgaagttggtggcgtatgcccaggcgttgttg 787
>gb|U74295.1|OSU74295 Oryza sativa chlorophyll a/b binding protein (kcdl895) mRNA, complete cds Length = 1022 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| | |||||||||||| ||||||| ||||||||| Sbjct: 833 ccggggacaaagttggtggcgtaggcccatgcgttgttg 795
>gb|U43707.1|PAU43707 Picea abies chlorophyll a/b binding protein of PS II mRNA, partial cds Length = 551 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 389 ccggggacgaagttggtggcgtaagcccaggcgttgttg 351
>gb|U39475.1|GMU39475 Glycine max chlorophyll a/b-binding protein (cab3) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 977 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| ||||||| || |||||| Sbjct: 816 ccggggacgaagttggtggcgtaggcccaggcattgttg 778
>dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRNA for type I light-harvesting chlorophyll a/b binding protein of photosystem II (LHCPII), complete cds Length = 1022 Score = 46.1 bits (23), Expect = 0.028 Identities = 35/39 (89%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | ||||| ||||||||| Sbjct: 829 ccggggacgaagttggtggcgtacgcccaggcgttgttg 791
>ref|NM_102731.2| Arabidopsis thaliana CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding AT1G29910 (CAB3) mRNA, complete cds Length = 1020 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||| ||||||||||| ||||||||| Sbjct: 841 aagttggttgcgaaggcccatgcgttgttg 812
>ref|NM_102732.2| Arabidopsis thaliana CAB2; chlorophyll binding AT1G29920 (CAB2) mRNA, complete cds Length = 1176 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 855 aagttggtggcaaaggcccaagcgttgttg 826
>gb|BT015572.1| Arabidopsis thaliana At1g29910 mRNA sequence Length = 762 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 746 aagttggtggcaaaggcccaagcgttgttg 717
>gb|BT000726.1| Arabidopsis thaliana clone RAFL06-67-G16 (R11472) putative photosystem II type I chlorophyll a /b binding protein (At1g29920) mRNA, complete cds Length = 1044 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 841 aagttggtggcaaaggcccaagcgttgttg 812
>gb|AY128345.1| Arabidopsis thaliana photosystem II type I chlorophyll a/b binding protein, putative (At1g29920) mRNA, complete cds Length = 994 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 841 aagttggtggcaaaggcccaagcgttgttg 812
>gb|AY114594.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29910) mRNA, complete cds Length = 870 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||| ||||||||||| ||||||||| Sbjct: 788 aagttggttgcgaaggcccatgcgttgttg 759
>gb|AY081572.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29920) mRNA, complete cds Length = 898 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 788 aagttggtggcaaaggcccaagcgttgttg 759
>gb|AY065165.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29910; F1N18.5) mRNA, complete cds Length = 1019 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||| ||||||||||| ||||||||| Sbjct: 841 aagttggttgcgaaggcccatgcgttgttg 812
>gb|AY062814.1| Arabidopsis thaliana chlorophyll a/b-binding protein (At1g29920; F1N18.4) mRNA, complete cds Length = 1007 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 840 aagttggtggcaaaggcccaagcgttgttg 811
>gb|AY060500.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds Length = 804 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 788 aagttggtggcaaaggcccaagcgttgttg 759
>gb|AY054198.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds Length = 1027 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 834 aagttggtggcaaaggcccaagcgttgttg 805
>gb|AY052237.1| Arabidopsis thaliana At1g29920/F1N18_80 mRNA, complete cds Length = 1027 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 840 aagttggtggcaaaggcccaagcgttgttg 811
>gb|AY086905.1| Arabidopsis thaliana clone 29298 mRNA, complete sequence Length = 1041 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 855 aagttggtggcaaaggcccaagcgttgttg 826
>gb|AF279249.1|AF279249 Vigna radiata LHCII type I chlorophyll a/b-binding protein (CipLhcb1*2) mRNA, complete cds; nuclear gene for chloroplast product Length = 932 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||| ||||||| ||||||||| Sbjct: 835 aagttggtggcgtaggcccaggcgttgttg 806
>emb|X03908.1|ATLHCP2 A.thaliana gene (LHCP AB 180) for chlorophyll a/b binding protein Length = 1060 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||| ||||||||||| ||||||||| Sbjct: 994 aagttggttgcgaaggcccatgcgttgttg 965
>emb|X03907.1|ATLHCP1 A.thaliana gene (LHCP AB 165) for chlorophyll a/b binding protein Length = 999 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 ||||||||||| |||||||| ||||||||| Sbjct: 933 aagttggtggcaaaggcccaagcgttgttg 904
>emb|X81808.1|PALHCB1 P.abies (L.)Karst. Lhcb1*1 mRNA for light-harvesting chlorophyll a/b-binding protein Length = 1078 Score = 44.1 bits (22), Expect = 0.11 Identities = 28/30 (93%) Strand = Plus / Minus Query: 114 aagttggtggcgaaggcccacgcgttgttg 143 |||||||||||| ||||||| ||||||||| Sbjct: 822 aagttggtggcgtaggcccaggcgttgttg 793
>ref|NM_113685.3| Arabidopsis thaliana LHCB2:4; chlorophyll binding AT3G27690 (LHCB2:4) mRNA, complete cds Length = 946 Score = 40.1 bits (20), Expect = 1.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgtt 142 |||||||| |||||||||||||| | ||||| || ||||| Sbjct: 851 ttccggggacgaagttggtggcgtaagcccaagcattgtt 812
>gb|DQ226800.1| Boechera divaricarpa isolate SLW-B-D01 mRNA sequence Length = 510 Score = 40.1 bits (20), Expect = 1.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgtt 142 |||||||| |||||||||||||| | ||||| || ||||| Sbjct: 404 ttccggggacgaagttggtggcgtaagcccaagcattgtt 365
>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0082F22, complete sequence Length = 176038 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccgatggacagacggatggc 85 |||||||||||||||||||| Sbjct: 109238 ccgatggacagacggatggc 109219 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccgatggacagacggatggc 85 |||||||||||||||||||| Sbjct: 106454 ccgatggacagacggatggc 106435
>gb|AC122805.4| Mus musculus BAC clone RP23-296O23 from 3, complete sequence Length = 202733 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gtacaagtacacatgcatat 60 |||||||||||||||||||| Sbjct: 22438 gtacaagtacacatgcatat 22419
>gb|AF479779.1| Chlamydomonas reinhardtii major light-harvesting complex II protein m7 (Lhcbm7) mRNA, complete cds Length = 1016 Score = 40.1 bits (20), Expect = 1.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 107 gggggcgaagttggtggcgaaggcccacgcgttgtt 142 ||||| ||| |||||||||||||| |||||||||| Sbjct: 782 gggggtgaacttggtggcgaaggcgaacgcgttgtt 747
>gb|AF479777.1| Chlamydomonas reinhardtii major light-harvesting complex II protein m10 (Lhcbm10) mRNA, complete cds Length = 1077 Score = 40.1 bits (20), Expect = 1.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 107 gggggcgaagttggtggcgaaggcccacgcgttgtt 142 ||||| ||| |||||||||||||| |||||||||| Sbjct: 783 gggggtgaacttggtggcgaaggcgaacgcgttgtt 748
>gb|DQ122900.1| Chlamydomonas incerta chloroplast light-harvesting chlorophyll-a/b binding protein (LhcII-1.3) mRNA, complete cds; nuclear gene for chloroplast product Length = 1100 Score = 40.1 bits (20), Expect = 1.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 107 gggggcgaagttggtggcgaaggcccacgcgttgtt 142 ||||| ||| |||||||||||||| |||||||||| Sbjct: 777 gggggtgaacttggtggcgaaggcgaacgcgttgtt 742
>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5, complete sequence Length = 165851 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 gctgctaaacacatttaact 103 |||||||||||||||||||| Sbjct: 103691 gctgctaaacacatttaact 103672
>gb|BT006298.1| Arabidopsis thaliana At3g27700 mRNA, complete cds Length = 801 Score = 40.1 bits (20), Expect = 1.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgtt 142 |||||||| |||||||||||||| | ||||| || ||||| Sbjct: 796 ttccggggacgaagttggtggcgtaagcccaagcattgtt 757
>gb|AF370557.1|AF370557 Arabidopsis thaliana light harvesting chlorophyll a/b-binding protein (MGF10.9) mRNA, complete cds Length = 917 Score = 40.1 bits (20), Expect = 1.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgtt 142 |||||||| |||||||||||||| | ||||| || ||||| Sbjct: 845 ttccggggacgaagttggtggcgtaagcccaagcattgtt 806
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccgatggacagacggatggc 85 |||||||||||||||||||| Sbjct: 13146461 ccgatggacagacggatggc 13146442 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccgatggacagacggatggc 85 |||||||||||||||||||| Sbjct: 13143677 ccgatggacagacggatggc 13143658
>gb|AY088541.1| Arabidopsis thaliana clone 7700 mRNA, complete sequence Length = 917 Score = 40.1 bits (20), Expect = 1.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgtt 142 |||||||| |||||||||||||| | ||||| || ||||| Sbjct: 845 ttccggggacgaagttggtggcgtaagcccaagcattgtt 806
>gb|AF134125.1| Arabidopsis thaliana Lhcb2 protein (Lhcb2:4) mRNA, complete cds Length = 897 Score = 40.1 bits (20), Expect = 1.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgtt 142 |||||||| |||||||||||||| | ||||| || ||||| Sbjct: 801 ttccggggacgaagttggtggcgtaagcccaagcattgtt 762
>dbj|AB018114.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGF10 Length = 84702 Score = 40.1 bits (20), Expect = 1.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgtt 142 |||||||| |||||||||||||| | ||||| || ||||| Sbjct: 31777 ttccggggacgaagttggtggcgtaagcccaagcattgtt 31738
>dbj|AB115771.1| Physcomitrella patens subsp. patens PpLhcb1 gene for light-harvesting chlorophyll a/b-binding protein 1, complete cds Length = 1975 Score = 40.1 bits (20), Expect = 1.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 112 cgaagttggtggcgaaggcccacgcgttgttg 143 |||||||||||||| | ||||| ||||||||| Sbjct: 1838 cgaagttggtggcgtatgcccatgcgttgttg 1807
>gb|AC132143.3| Mus musculus BAC clone RP23-20J10 from 3, complete sequence Length = 205880 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gtacaagtacacatgcatat 60 |||||||||||||||||||| Sbjct: 125910 gtacaagtacacatgcatat 125891
>gb|U51633.1|PPU51633 Pinus palustris type 1 light-harvesting chlorophyll a/b-binding polypeptide (Lhcb1) mRNA, partial cds Length = 414 Score = 40.1 bits (20), Expect = 1.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 112 cgaagttggtggcgaaggcccacgcgttgttg 143 ||||||||||||| ||||||| ||||||||| Sbjct: 275 cgaagttggtggcataggcccaggcgttgttg 244
>gb|M14444.1|TOMCBPB Tomato chlorophyll a/b-binding protein gene Cab-3C, complete cds Length = 1135 Score = 40.1 bits (20), Expect = 1.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 103 ttccgggggcgaagttggtggcgaaggcccacgcgttgtt 142 |||||||| | ||||| |||||||||||||| || ||||| Sbjct: 1001 ttccggggacaaagtttgtggcgaaggcccaagcattgtt 962
>dbj|AB051208.1| Chlamydomonas reinhardtii mRNA for light-harvesting chlorophyll-a/b binding protein LhcII-1.3, complete cds Length = 1107 Score = 40.1 bits (20), Expect = 1.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 107 gggggcgaagttggtggcgaaggcccacgcgttgtt 142 ||||| ||| |||||||||||||| |||||||||| Sbjct: 811 gggggtgaacttggtggcgaaggcgaacgcgttgtt 776
>dbj|AB051204.1| Chlamydomonas reinhardtii gene for light-harvesting chlorophyll-a/b binding protein LhcII-1.3, complete cds Length = 1835 Score = 40.1 bits (20), Expect = 1.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 107 gggggcgaagttggtggcgaaggcccacgcgttgtt 142 ||||| ||| |||||||||||||| |||||||||| Sbjct: 1653 gggggtgaacttggtggcgaaggcgaacgcgttgtt 1618
>gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, complete sequence Length = 236143 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggacagacggatggctgct 89 ||||||||||||||||||| Sbjct: 115211 ggacagacggatggctgct 115193
>gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome 5, complete sequence Length = 224181 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 tacaagtacacatgcatat 60 ||||||||||||||||||| Sbjct: 52160 tacaagtacacatgcatat 52142
>gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, complete sequence Length = 194309 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 tacaagtacacatgcatat 60 ||||||||||||||||||| Sbjct: 94097 tacaagtacacatgcatat 94115
>gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete sequence Length = 206570 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 tacaagtacacatgcatat 60 ||||||||||||||||||| Sbjct: 109745 tacaagtacacatgcatat 109763
>emb|AL365321.16| Human DNA sequence from clone RP11-324J2 on chromosome 1 Contains the 5' end of the PHTF1 gene for putative homeodomain transcription factor 1, the 3' end of the gene for a novel protein (FLJ11220 and FLJ12104) and a CpG island, complete sequence Length = 40891 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 ctaaacacatttaacttcc 106 ||||||||||||||||||| Sbjct: 30781 ctaaacacatttaacttcc 30799
>gb|BC056343.1| Mus musculus sortilin 1, mRNA (cDNA clone MGC:73925 IMAGE:5704346), complete cds Length = 6804 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggacagacggatggctgct 89 ||||||||||||||||||| Sbjct: 2003 ggacagacggatggctgct 1985
>dbj|AK147442.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1042I07 product:sortilin 1, full insert sequence Length = 6837 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggacagacggatggctgct 89 ||||||||||||||||||| Sbjct: 2054 ggacagacggatggctgct 2036
>gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 genomic sequence, complete sequence Length = 143961 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 113 gaagttggtggcgaaggcccacg 135 |||| |||||||||||||||||| Sbjct: 18054 gaaggtggtggcgaaggcccacg 18032
>gb|BC034129.1| Mus musculus sortilin 1, mRNA (cDNA clone IMAGE:4920258), partial cds Length = 2810 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggacagacggatggctgct 89 ||||||||||||||||||| Sbjct: 1504 ggacagacggatggctgct 1486
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 113 gaagttggtggcgaaggcccacg 135 |||| |||||||||||||||||| Sbjct: 22366031 gaaggtggtggcgaaggcccacg 22366009
>dbj|AK177805.1| Mus musculus cDNA, clone:Y0G0104F07, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000016188, based on BLAT search Length = 230 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggacagacggatggctgct 89 ||||||||||||||||||| Sbjct: 145 ggacagacggatggctgct 127
>emb|Y13865.1|BVCHLOROP Beta vulgaris mRNA for chlorophyll a/b-binding protein Length = 1036 Score = 38.2 bits (19), Expect = 6.8 Identities = 28/31 (90%) Strand = Plus / Minus Query: 112 cgaagttggtggcgaaggcccacgcgttgtt 142 ||||||||||||| |||||||| || ||||| Sbjct: 859 cgaagttggtggcaaaggcccaggcattgtt 829
>gb|AF175279.1|AF175279 Mus musculus neurotensin receptor 3 mRNA, complete cds Length = 2484 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggacagacggatggctgct 89 ||||||||||||||||||| Sbjct: 2000 ggacagacggatggctgct 1982
>gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-33p17, complete sequence Length = 116124 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 acgtacaagtacacatgca 57 ||||||||||||||||||| Sbjct: 23399 acgtacaagtacacatgca 23417
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 113 gaagttggtggcgaaggcccacg 135 |||| |||||||||||||||||| Sbjct: 22378099 gaaggtggtggcgaaggcccacg 22378077
>ref|NM_019972.2| Mus musculus sortilin 1 (Sort1), mRNA Length = 6804 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggacagacggatggctgct 89 ||||||||||||||||||| Sbjct: 2003 ggacagacggatggctgct 1985
>emb|AL954144.6| Zebrafish DNA sequence from clone CH211-206L15, complete sequence Length = 156893 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccgatggacagacggatgg 84 ||||||||||||||||||| Sbjct: 91971 ccgatggacagacggatgg 91989
>gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor (Wcab) mRNA, complete cds Length = 918 Score = 38.2 bits (19), Expect = 6.8 Identities = 34/39 (87%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| | |||||||||||||| ||||| || |||||| Sbjct: 803 ccggggacaaagttggtggcgaatgcccatgcattgttg 765
>emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chromosome 3, complete sequence Length = 132775 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggacagacggatggctgct 89 ||||||||||||||||||| Sbjct: 86844 ggacagacggatggctgct 86826
>emb|AL663032.9| Mouse DNA sequence from clone RP23-27I6 on chromosome X, complete sequence Length = 162995 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 79 ggatggctgctaaacacatttaa 101 |||||||||| |||||||||||| Sbjct: 101941 ggatggctgccaaacacatttaa 101919
>dbj|D00642.1|RICLHCP2 Oryza sativa (japonica cultivar-group) mRNA for type II light-harvesting chlorophyll a/b binding protein of photosystem II (LHCPII), complete cds Length = 989 Score = 38.2 bits (19), Expect = 6.8 Identities = 34/39 (87%) Strand = Plus / Minus Query: 105 ccgggggcgaagttggtggcgaaggcccacgcgttgttg 143 |||||| |||||||||||||| | | ||| ||||||||| Sbjct: 817 ccggggacgaagttggtggcgtatgaccaggcgttgttg 779 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 975,632 Number of Sequences: 3902068 Number of extensions: 975632 Number of successful extensions: 57724 Number of sequences better than 10.0: 167 Number of HSP's better than 10.0 without gapping: 168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57313 Number of HSP's gapped (non-prelim): 411 length of query: 143 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 122 effective length of database: 17,151,101,840 effective search space: 2092434424480 effective search space used: 2092434424480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
