ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet57a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FBN3_HUMAN (Q75N90) Fibrillin-3 precursor 30 1.6
2UN13C_HUMAN (Q8NB66) Unc-13 homolog C (Munc13-3) (Fragment) 30 2.1
3PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7... 30 2.1
4UN13C_RAT (Q62770) Unc-13 homolog C (Munc13-3) 29 3.7
5EGFL8_HUMAN (Q99944) EGF-like domain-containing protein 8 precur... 29 3.7
6CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precur... 28 8.2

>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor|
          Length = 2809

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 105  YSPEPRQRTCM*SHQCSVVV*YCSLLCKSSK 13
            Y+P+    TC+   +CS V   C+ LCK++K
Sbjct: 2394 YTPDATATTCLDMDECSQVPKPCTFLCKNTK 2424



to top

>UN13C_HUMAN (Q8NB66) Unc-13 homolog C (Munc13-3) (Fragment)|
          Length = 1190

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 89   LGSGEYRARARVAHQTWKTNWNSTVTRTMGREGRPHQKEIH 211
            LG  + +   +    TW   +N T    +G+E RP   E+H
Sbjct: 1070 LGDKKRKQGTKTKSNTWSPKYNETFQFILGKENRPGAYELH 1110



to top

>PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7.11.1)|
          Length = 1142

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 106  QSKSKSSTSNLEDKLEFHGNTDDGK 180
            Q K+ + TSNL D +EF+GN D  K
Sbjct: 1022 QKKATTETSNLTDIVEFNGNNDHRK 1046



to top

>UN13C_RAT (Q62770) Unc-13 homolog C (Munc13-3)|
          Length = 2204

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 89   LGSGEYRARARVAHQTWKTNWNSTVTRTMGREGRPHQKEIH 211
            LG  + +   +    TW   +N T    +G E RP   E+H
Sbjct: 2084 LGDKKRKQGTKTKSNTWSPKYNETFQFILGNENRPGAYELH 2124



to top

>EGFL8_HUMAN (Q99944) EGF-like domain-containing protein 8 precursor (Epidermal|
           growth factor-like protein 8) (Multiple EGF-like domain
           protein 8) (Vascular endothelial-statin 2) (VE-statin-2)
          Length = 293

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = +2

Query: 5   ETTLLDLHNNEQYYTTTEH**DYIQVLCLGSGEYRARARVAHQTWKTNWNSTVTRTMGRE 184
           +T ++ LH NE Y         Y   L L +G      R    T++T +     R M RE
Sbjct: 41  QTLVVPLHYNESYSQPV-----YKPYLTLCAG------RRICSTYRTMY-----RVMWRE 84

Query: 185 GRPHQKEIHSEHAVCSSGW 241
            R   +E+   HAVC  GW
Sbjct: 85  VR---REVQQTHAVCCQGW 100



to top

>CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)|
           (Cysteine-rich repeat-containing protein S52)
          Length = 1036

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 74  CNLISAQLLCSTARCCANP 18
           CN+I+ +  C+T R C+NP
Sbjct: 133 CNIINGKCECNTIRTCSNP 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,890,558
Number of Sequences: 219361
Number of extensions: 690326
Number of successful extensions: 1967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top