ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 490 e-135
2emb|AL591304.1| Human DNA sequence from clone RP11-21G12 on chro... 42 0.94
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.94
4gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswel... 42 0.94
5dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.94
6gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047... 42 0.94
7gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, com... 40 3.7
8emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chr... 40 3.7
9emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in ... 40 3.7
10gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 3.7
11emb|AL845486.6| Mouse DNA sequence from clone RP23-236H7 on chro... 40 3.7

>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA)
          Length = 1174

 Score =  490 bits (247), Expect = e-135
 Identities = 250/251 (99%)
 Strand = Plus / Minus

                                                                        
Query: 34   cagagaaaaacaaacacatgaagaacagaacgagatgagacatatattacacacgatctg 93
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 cagagaaaaacaaacacatgaagaacagaacgagatgagacatatattacacacgatctg 1115

                                                                        
Query: 94   aacgtgacaaggagcaaacagaagaatctaccacccgctccatttcacattatcccccct 153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 aacgtgacaaggagcaaacagaagaatctaccacccgctccatttcacattatcccccct 1055

                                                                        
Query: 154  cactggtccttatttatcatacagtacaatacagacgcccccatcttccctatccccggc 213
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1054 cactggtccttatttatcatacagtacaatacagacgcccccatcttccctatctccggc 995

                                                                        
Query: 214  cgtcttcctccggcgatcgacgtatacacggacggtccaatgctaccttgcttttgatgg 273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  cgtcttcctccggcgatcgacgtatacacggacggtccaatgctaccttgcttttgatgg 935

                       
Query: 274  acggggactac 284
            |||||||||||
Sbjct: 934  acggggactac 924



to top

>emb|AL591304.1| Human DNA sequence from clone RP11-21G12 on chromosome 6, complete
             sequence
          Length = 35013

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 39    aaaaacaaacacatgaagaacagaa 63
             ||||||||||||||||| |||||||
Sbjct: 27216 aaaaacaaacacatgaacaacagaa 27240



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 41      aaacaaacacatgaagaacag 61
               |||||||||||||||||||||
Sbjct: 6009611 aaacaaacacatgaagaacag 6009631



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 41      aaacaaacacatgaagaacag 61
               |||||||||||||||||||||
Sbjct: 6003871 aaacaaacacatgaagaacag 6003851



to top

>gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183562

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 39     aaaaacaaacacatgaagaacagaa 63
              ||||||||||||||||| |||||||
Sbjct: 144429 aaaaacaaacacatgaacaacagaa 144405



to top

>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F05
          Length = 147472

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    aaacaaacacatgaagaacag 61
             |||||||||||||||||||||
Sbjct: 30450 aaacaaacacatgaagaacag 30470



 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    aaacaaacacatgaagaacag 61
             |||||||||||||||||||||
Sbjct: 24710 aaacaaacacatgaagaacag 24690



to top

>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds
          Length = 1785

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 157  tggtccttatttatcatacag 177
            |||||||||||||||||||||
Sbjct: 1462 tggtccttatttatcatacag 1442



to top

>gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, complete sequence
          Length = 235703

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    aaaaacaaacacatgaagaa 58
             ||||||||||||||||||||
Sbjct: 83070 aaaaacaaacacatgaagaa 83051



to top

>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains
            part of a novel gene (FLJ30499) and the 3' end of a novel
            gene (FLJ30450), complete sequence
          Length = 41069

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  ctcactggtccttatttatc 171
            ||||||||||||||||||||
Sbjct: 3262 ctcactggtccttatttatc 3243



to top

>emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in linkage group 11,
             complete sequence
          Length = 111222

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   tatttatcatacagtacaat 183
             ||||||||||||||||||||
Sbjct: 36635 tatttatcatacagtacaat 36616



to top

>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    cccggccgtcttcctccggc 227
              ||||||||||||||||||||
Sbjct: 951280 cccggccgtcttcctccggc 951261



to top

>emb|AL845486.6| Mouse DNA sequence from clone RP23-236H7 on chromosome 2, complete
              sequence
          Length = 198481

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     ggatcagagaaaaacaaaca 49
              ||||||||||||||||||||
Sbjct: 102656 ggatcagagaaaaacaaaca 102675


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,123,851
Number of Sequences: 3902068
Number of extensions: 3123851
Number of successful extensions: 58700
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58657
Number of HSP's gapped (non-prelim): 43
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top