ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet56h05 |
|---|---|
| Clone Library Name | barley_pub |
>AMGO1_HUMAN (Q86WK6) Amphoterin-induced protein 1 precursor (Alivin-2)| Length = 493 Score = 28.9 bits (63), Expect = 4.0 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -3 Query: 142 LPNVPANDLQQLPPWVDNKWNGIRMGLQKMICVLALFRLQS 20 L N+P DLQ+LP W+ NG+ + + C L++L S Sbjct: 197 LKNLPLPDLQKLPAWIK---NGLYLHNNPLNCDCELYQLFS 234
>RECA_SERMA (P17479) Protein recA (Recombinase A)| Length = 353 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%) Frame = +3 Query: 27 NLNNASTHIIFCNPIRMPFHLL-----STQGGSCCRSFA 128 NL NA+T +IF N IRM ++ +T GG+ + +A Sbjct: 181 NLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 219
>RECA_ENTAG (P33037) Protein recA (Recombinase A)| Length = 353 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%) Frame = +3 Query: 27 NLNNASTHIIFCNPIRMPFHLL-----STQGGSCCRSFA 128 NL NA+T +IF N IRM ++ +T GG+ + +A Sbjct: 181 NLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 219
>RECA_YERPS (Q66E70) Protein recA (Recombinase A)| Length = 356 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%) Frame = +3 Query: 27 NLNNASTHIIFCNPIRMPFHLL-----STQGGSCCRSFA 128 NL NA+T +IF N IRM ++ +T GG+ + +A Sbjct: 182 NLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 220
>RECA_YERPE (P37858) Protein recA (Recombinase A)| Length = 355 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%) Frame = +3 Query: 27 NLNNASTHIIFCNPIRMPFHLL-----STQGGSCCRSFA 128 NL NA+T +IF N IRM ++ +T GG+ + +A Sbjct: 181 NLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 219
>RECA_SODGL (P62220) Protein recA (Recombinase A)| Length = 355 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%) Frame = +3 Query: 27 NLNNASTHIIFCNPIRMPFHLL-----STQGGSCCRSFA 128 NL NA+T +IF N IRM ++ +T GG+ + +A Sbjct: 182 NLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 220
>AMGO1_MOUSE (Q80ZD8) Amphoterin-induced protein 1 precursor (Alivin-2)| Length = 492 Score = 27.7 bits (60), Expect = 9.0 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 142 LPNVPANDLQQLPPWVDNKWNGIRMGLQKMICVLALFRLQS 20 L +P DLQ+LP WV NG+ + + C L++L S Sbjct: 197 LKKLPLTDLQKLPAWVK---NGLYLHNNPLECDCKLYQLFS 234
>HAK2_ORYSA (Q942X8) Probable potassium transporter 2 (OsHAK2)| Length = 783 Score = 27.7 bits (60), Expect = 9.0 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Frame = +1 Query: 19 LTAI*TTQAHISF-FAIPSGCHSICCLPKAEVV 114 L A+ +QA IS F+I CHS+ C P+ +VV Sbjct: 349 LAAVVGSQAVISATFSIVKQCHSLGCFPRVKVV 381
>AMGO1_RAT (Q80ZD7) Amphoterin-induced protein 1 precursor (Alivin-2)| Length = 493 Score = 27.7 bits (60), Expect = 9.0 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 142 LPNVPANDLQQLPPWVDNKWNGIRMGLQKMICVLALFRLQS 20 L +P DLQ+LP WV NG+ + + C L++L S Sbjct: 197 LKKLPLTDLQKLPAWVK---NGLYLHNNPLECDCKLYQLFS 234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,136,236 Number of Sequences: 219361 Number of extensions: 421622 Number of successful extensions: 1329 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1285 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1329 length of database: 80,573,946 effective HSP length: 29 effective length of database: 74,212,477 effective search space used: 1781099448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
