ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHSB_YEAST (P21801) Succinate dehydrogenase [ubiquinone] iron-su... 29 4.0
2CRCB2_BACLD (Q65LX3) Protein crcB homolog 2 28 8.8

>DHSB_YEAST (P21801) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,|
           mitochondrial precursor (EC 1.3.5.1) (IP)
          Length = 266

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 124 LPPGAFPRRTTAIL*SAQAALSVICLFECLLCGVCFTT 11
           L   +FP+  T +L S +    +  L+EC+LC  C T+
Sbjct: 151 LQRSSFPKDGTEVLQSIEDRKKLDGLYECILCACCSTS 188



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>CRCB2_BACLD (Q65LX3) Protein crcB homolog 2|
          Length = 132

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 112 AFPRRTTAIL*SAQAALSVICLFECLLCGVCF 17
           AF + T  +L SA A + V+ L   L CGVCF
Sbjct: 78  AFSKETVLLLQSA-AHIGVLYLMASLACGVCF 108


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,239,804
Number of Sequences: 219361
Number of extensions: 206050
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 80,573,946
effective HSP length: 33
effective length of database: 73,335,033
effective search space used: 1760040792
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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