ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet56g11 |
|---|---|
| Clone Library Name | barley_pub |
>R4RL2_RAT (Q80WD1) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 32.3 bits (72), Expect = 0.32 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 57 PTETSRGRQGFHVPRKTSYFGGHHRTDQ 140 P E SRGRQG P + Y+GG+ DQ Sbjct: 352 PAEDSRGRQGGDAPTEDDYWGGYGGEDQ 379
>R4RL2_MOUSE (Q7M6Z0) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 32.3 bits (72), Expect = 0.32 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 57 PTETSRGRQGFHVPRKTSYFGGHHRTDQ 140 P E SRGRQG P + Y+GG+ DQ Sbjct: 352 PAEDSRGRQGGDAPTEDDYWGGYGGEDQ 379
>R4RL2_HUMAN (Q86UN3) Reticulon-4 receptor-like 2 precursor (Nogo-66 receptor| homolog 1) (Nogo-66 receptor-related protein 2) (NgR2) (Nogo receptor-like 3) Length = 420 Score = 32.3 bits (72), Expect = 0.32 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 57 PTETSRGRQGFHVPRKTSYFGGHHRTDQ 140 P E SRGRQG P + Y+GG+ DQ Sbjct: 352 PAEDSRGRQGGDAPTEDDYWGGYGGEDQ 379
>PYRE_HELPY (P56162) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT)| (OPRTase) Length = 201 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = +2 Query: 29 KNSEEEYIHTDRNE*GEARLPCAK------KNLIFWGASSNRSACSHAHTHIE 169 K +E+ + D G++ + CAK ++ +GA +NR C AH+H++ Sbjct: 104 KKNEKILVCEDIITTGKSAMECAKVLEEKGAQIVAFGALANRGICKRAHSHLK 156
>PYRE_HELPJ (Q9ZJX0) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT)| (OPRTase) Length = 201 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = +2 Query: 29 KNSEEEYIHTDRNE*GEARLPCAK------KNLIFWGASSNRSACSHAHTHIE 169 K +E+ + D G++ + CAK ++ +GA +NR C AH+H++ Sbjct: 104 KKNEKILVCEDIITTGKSAMECAKVLEEKGAQIVAFGALANRGICKRAHSHLK 156
>PHOSP_PI1HC (P28054) Phosphoprotein (Protein P)| Length = 568 Score = 28.9 bits (63), Expect = 3.5 Identities = 21/75 (28%), Positives = 31/75 (41%) Frame = +3 Query: 48 IYTPTETSRGRQGFHVPRKTSYFGGHHRTDQLALMPTHTSSDRLSPSQFVLQPNPKPSAR 227 I TPT+ R + + R+TS L H +S R + PNP P Sbjct: 75 ISTPTQDHRSGEESGISRRTSESKTETHARLLDQQSIHRASRRGT------SPNPLPENM 128 Query: 228 GKKRLA*LNRDVPNK 272 G +R ++ D PN+ Sbjct: 129 GNERNTRIDEDSPNE 143
>ADA22_HUMAN (Q9P0K1) ADAM 22 precursor (A disintegrin and metalloproteinase| domain 22) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 2) (Metalloproteinase-disintegrin ADAM22-3) Length = 906 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +3 Query: 150 MPTHTSSDRLSPSQFVLQPNPKPSARGKKR 239 +P+ ++PS+F+L+P PK S R +R Sbjct: 200 LPSEFQQVNITPSKFILKPRPKRSKRQLRR 229
>PHOSP_PI1HB (P32530) Phosphoprotein (Protein P)| Length = 568 Score = 28.1 bits (61), Expect = 6.0 Identities = 21/75 (28%), Positives = 31/75 (41%) Frame = +3 Query: 48 IYTPTETSRGRQGFHVPRKTSYFGGHHRTDQLALMPTHTSSDRLSPSQFVLQPNPKPSAR 227 I TPT+ R + + R+TS L H +S R + PNP P Sbjct: 75 ISTPTQDHRSGEESGISRRTSESKTETHARILDQQGIHRASRRGT------SPNPLPENM 128 Query: 228 GKKRLA*LNRDVPNK 272 G +R ++ D PN+ Sbjct: 129 GNERNTRIDEDSPNE 143
>DPO3A_XYLFT (Q87EY0) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1193 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +2 Query: 137 SACSHAHTHIERSTLAITIRTPTQP-QAKCKGQKEASL 247 S+ H H H E S TIR P +P QA K K+A+L Sbjct: 4 SSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANL 41
>DPO3A_XYLFA (Q9PGU4) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1193 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +2 Query: 137 SACSHAHTHIERSTLAITIRTPTQP-QAKCKGQKEASL 247 S+ H H H E S TIR P +P QA K K+A+L Sbjct: 4 SSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANL 41
>PHOSP_PI1HD (P32531) Phosphoprotein (Protein P)| Length = 568 Score = 27.7 bits (60), Expect = 7.8 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = +3 Query: 48 IYTPTETSRGRQGFHVPRKTSYFGGHHRTDQLALMPTHTSSDRLSPSQFVLQPNPKPSAR 227 I TPT+ R + + R+T G +T+ A + R S PNP P Sbjct: 75 ISTPTQDHRSSEESGISRRT----GESKTETHARILDQQGIHRASRRG--TSPNPLPENM 128 Query: 228 GKKRLA*LNRDVPNK 272 G +R ++ D PN+ Sbjct: 129 GNERNTRIDEDSPNE 143
>OTX1_RAT (Q63410) Homeobox protein OTX1| Length = 355 Score = 27.7 bits (60), Expect = 7.8 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +3 Query: 57 PTETSRGR---QGFHVPRKTSYFGGHHRTDQLALMPTHTSSDRLSP 185 P +GR QG+ P +SYFGG + LA M +H +LSP Sbjct: 222 PMSYGQGRSYGQGYPAP-SSSYFGGVDCSSYLAPMHSHHHPHQLSP 266
>NOT4_YEAST (P34909) General negative regulator of transcription subunit 4| Length = 587 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/58 (25%), Positives = 28/58 (48%) Frame = +2 Query: 11 TSLSFFKNSEEEYIHTDRNE*GEARLPCAKKNLIFWGASSNRSACSHAHTHIERSTLA 184 TS++ KNS + T + G P + + ++N +A SH+H ++ +LA Sbjct: 355 TSINLSKNSSSINLPTLNDSLGHHTTPTTENTITSTTTTTNTNATSHSHGSKKKQSLA 412
>APBE_HAEIN (P44550) Thiamine biosynthesis lipoprotein apbE precursor| Length = 346 Score = 27.7 bits (60), Expect = 7.8 Identities = 19/61 (31%), Positives = 24/61 (39%) Frame = +3 Query: 63 ETSRGRQGFHVPRKTSYFGGHHRTDQLALMPTHTSSDRLSPSQFVLQPNPKPSARGKKRL 242 E + R + KT Y HH L PT ++D LS FVL + K L Sbjct: 259 EENGKRFAHEIDPKTGYPIQHHLASITVLAPTSMTADGLSTGLFVLGEDKALEVAEKNNL 318 Query: 243 A 245 A Sbjct: 319 A 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,348,420 Number of Sequences: 219361 Number of extensions: 921743 Number of successful extensions: 2825 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2825 length of database: 80,573,946 effective HSP length: 72 effective length of database: 64,779,954 effective search space used: 1554718896 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
