ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC093578.3| Homo sapiens chromosome 1 clone RP11-76N22, compl... 48 0.014
2gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, comp... 44 0.22
3gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosom... 44 0.22
4emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in l... 44 0.22
5gb|AC145590.3| Mus musculus BAC clone RP24-175D4 from chromosome... 42 0.87
6gb|U53336.1| Caenorhabditis elegans cosmid K07C11, complete sequ... 42 0.87
7gb|AY552098.1| Homo sapiens phospholipase A2, group IVA (cytosol... 42 0.87
8gb|AC133904.9| Mus musculus chromosome 19, clone RP24-143J12, co... 42 0.87
9emb|AL022147.3|HS799N4 Human DNA sequence from clone RP4-799N4 o... 42 0.87
10emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 42 0.87
11ref|NM_072713.2| Caenorhabditis elegans K07C11.4 (esterase) mRNA... 42 0.87
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
13dbj|AK067501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.87
14emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 0.87
15emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, c... 42 0.87
16emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 42 0.87
17emb|AL732615.15| Mouse DNA sequence from clone RP23-190O8 on chr... 42 0.87
18gb|AC114644.10| Mus musculus chromosome 1, clone RP24-128L10, co... 40 3.4
19ref|XM_516202.1| PREDICTED: Pan troglodytes hypothetical protein... 40 3.4
20ref|XM_873163.1| PREDICTED: Bos taurus similar to retinoblastoma... 40 3.4
21ref|XM_873064.1| PREDICTED: Bos taurus similar to retinoblastoma... 40 3.4
22ref|XM_610013.2| PREDICTED: Bos taurus similar to retinoblastoma... 40 3.4
23ref|XM_864346.1| PREDICTED: Bos taurus similar to retinoblastoma... 40 3.4
24gb|AC112794.4| Mus musculus chromosome 12 clone RP24-121O24, com... 40 3.4
25ref|XM_988474.1| PREDICTED: Mus musculus AT rich interactive dom... 40 3.4
26ref|XM_898193.2| PREDICTED: Mus musculus AT rich interactive dom... 40 3.4
27ref|XM_354675.4| PREDICTED: Mus musculus AT rich interactive dom... 40 3.4
28ref|XM_898206.2| PREDICTED: Mus musculus AT rich interactive dom... 40 3.4
29ref|XM_923512.2| PREDICTED: Mus musculus AT rich interactive dom... 40 3.4
30ref|XM_914992.2| PREDICTED: Mus musculus AT rich interactive dom... 40 3.4
31ref|XM_923528.2| PREDICTED: Mus musculus AT rich interactive dom... 40 3.4
32gb|BC037715.1| Mus musculus AT rich interactive domain 4A (Rbp1 ... 40 3.4
33gb|AC124728.5| Mus musculus BAC clone RP23-470C22 from chromosom... 40 3.4
34gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete... 40 3.4
35ref|XM_537461.2| PREDICTED: Canis familiaris similar to retinobl... 40 3.4
36ref|XM_859819.1| PREDICTED: Canis familiaris similar to retinobl... 40 3.4
37gb|AF067943.1| Caenorhabditis elegans cosmid F59B1, complete seq... 40 3.4
38ref|XM_662867.1| Cryptosporidium hominis TU502 dolichyl phosphat... 40 3.4
39ref|NM_023001.1| Homo sapiens AT rich interactive domain 4A (RBP... 40 3.4
40ref|NM_002892.2| Homo sapiens AT rich interactive domain 4A (RBP... 40 3.4
41ref|NM_023000.1| Homo sapiens AT rich interactive domain 4A (RBP... 40 3.4
42emb|CR392362.23| Zebrafish DNA sequence from clone DKEY-5B19 in ... 40 3.4
43emb|AL354829.8| Human DNA sequence from clone RP11-218B22 on chr... 40 3.4
44emb|AL121581.41|HS1022E24 Human DNA sequence from clone RP5-1022... 40 3.4
45emb|AJ720708.1| Gallus gallus mRNA for hypothetical protein, clo... 40 3.4
46gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosom... 40 3.4
47ref|NM_001012902.1| Gallus gallus AT rich interactive domain 4A ... 40 3.4
48gb|AC117372.2| Homo sapiens 12 BAC RP11-266O15 (Roswell Park Can... 40 3.4
49gb|AC118480.3| Homo sapiens BAC clone RP11-393K13 from 4, comple... 40 3.4
50gb|AC073614.17| Homo sapiens Xp BAC RP11-617O8 (Roswell Park Can... 40 3.4
51gb|S66427.1| RBP1=retinoblastoma binding protein 1 [human, Nalm-... 40 3.4
52ref|XM_626196.1| Cryptosporidium parvum Iowa II Alg5 like dolich... 40 3.4
53emb|CR386280.1| Gallus gallus finished cDNA, clone ChEST57c20 40 3.4
54dbj|AK033606.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 40 3.4
55dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
56gb|AC046130.25| Homo sapiens 12 BAC RP11-847H18 (Roswell Park Ca... 40 3.4
57ref|NM_172891.1| Mus musculus serine/threonine/tyrosine kinase 1... 40 3.4
58ref|XM_234281.3| PREDICTED: Rattus norvegicus AT rich interactiv... 40 3.4
59gb|AC006511.5| Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Can... 40 3.4
60dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
61dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
62emb|CR383683.17| Zebrafish DNA sequence from clone DKEY-114C3 in... 40 3.4
63emb|BX000462.10| Zebrafish DNA sequence from clone DKEY-114F6 in... 40 3.4
64emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-5... 40 3.4
65emb|BX465834.20| Zebrafish DNA sequence from clone CH211-202E12 ... 40 3.4
66gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromoso... 40 3.4
67gb|AC134594.5| Mus musculus BAC clone RP23-388B6 from 12, comple... 40 3.4
68dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 3.4
69emb|AL714027.8| Mouse DNA sequence from clone RP23-96E23 on chro... 40 3.4 
>gb|AC093578.3| Homo sapiens chromosome 1 clone RP11-76N22, complete sequence
          Length = 164453

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 195    aagagagattattttgtgtcttgg 218
              ||||||||||||||||||||||||
Sbjct: 148907 aagagagattattttgtgtcttgg 148884
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>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence
          Length = 274518

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 108   gcagggaaatgaaatacagtac 129
             ||||||||||||||||||||||
Sbjct: 76563 gcagggaaatgaaatacagtac 76542
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>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence
          Length = 187246

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 108   gcagggaaatgaaatacagtac 129
             ||||||||||||||||||||||
Sbjct: 85868 gcagggaaatgaaatacagtac 85847
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>emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in linkage group 2,
             complete sequence
          Length = 214484

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 69    caatgtctgaataaatatatatgtaa 94
             ||||||||||| ||||||||||||||
Sbjct: 13117 caatgtctgaaaaaatatatatgtaa 13092
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>gb|AC145590.3| Mus musculus BAC clone RP24-175D4 from chromosome 19, complete sequence
          Length = 179063

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   agtacagaagagagattattt 208
             |||||||||||||||||||||
Sbjct: 84362 agtacagaagagagattattt 84382
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>gb|U53336.1| Caenorhabditis elegans cosmid K07C11, complete sequence
          Length = 31889

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 150  atatttcctagtttcaccagc 170
            |||||||||||||||||||||
Sbjct: 6288 atatttcctagtttcaccagc 6308
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>gb|AY552098.1| Homo sapiens phospholipase A2, group IVA (cytosolic, calcium-dependent)
             (PLA2G4A) gene, complete cds
          Length = 163504

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 19    caagaatacataatgcacacaacca 43
             ||||||||||||||| |||||||||
Sbjct: 76730 caagaatacataatggacacaacca 76754
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>gb|AC133904.9| Mus musculus chromosome 19, clone RP24-143J12, complete sequence
          Length = 163882

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    agtacagaagagagattattt 208
              |||||||||||||||||||||
Sbjct: 144849 agtacagaagagagattattt 144829
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>emb|AL022147.3|HS799N4 Human DNA sequence from clone RP4-799N4 on chromosome 1q31 Contains the
             5' end of the PLA2G4A gene for phospholipase A2 group IVA
             (cytosolic, calcium dependent), complete sequence
          Length = 114638

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 19    caagaatacataatgcacacaacca 43
             ||||||||||||||| |||||||||
Sbjct: 89301 caagaatacataatggacacaacca 89325
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>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
              complete sequence
          Length = 150416

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    gcctgaaacaaaacctccgcc 265
              |||||||||||||||||||||
Sbjct: 128586 gcctgaaacaaaacctccgcc 128566
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>ref|NM_072713.2| Caenorhabditis elegans K07C11.4 (esterase) mRNA, complete cds
          Length = 1997

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 150 atatttcctagtttcaccagc 170
           |||||||||||||||||||||
Sbjct: 97  atatttcctagtttcaccagc 117
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 245      gcctgaaacaaaacctccgcc 265
                |||||||||||||||||||||
Sbjct: 32769153 gcctgaaacaaaacctccgcc 32769133
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>dbj|AK067501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110H12, full
            insert sequence
          Length = 1438

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 245  gcctgaaacaaaacctccgcc 265
            |||||||||||||||||||||
Sbjct: 1143 gcctgaaacaaaacctccgcc 1123
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>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete
             sequence
          Length = 91539

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   gcctgaaacaaaacctccgcc 265
             |||||||||||||||||||||
Sbjct: 39397 gcctgaaacaaaacctccgcc 39377
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>emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, complete sequence
          Length = 156592

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    aatgtctgaataaatatatat 90
             |||||||||||||||||||||
Sbjct: 33307 aatgtctgaataaatatatat 33287
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>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   gcctgaaacaaaacctccgcc 265
             |||||||||||||||||||||
Sbjct: 31443 gcctgaaacaaaacctccgcc 31423
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>emb|AL732615.15| Mouse DNA sequence from clone RP23-190O8 on chromosome 4, complete
             sequence
          Length = 189819

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    caagaatacataatgcacaca 39
             |||||||||||||||||||||
Sbjct: 15692 caagaatacataatgcacaca 15672
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>gb|AC114644.10| Mus musculus chromosome 1, clone RP24-128L10, complete sequence
          Length = 137391

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 109   cagggaaatgaaatacagtacaaa 132
             ||||||||||||||||||| ||||
Sbjct: 57179 cagggaaatgaaatacagttcaaa 57202
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>ref|XM_516202.1| PREDICTED: Pan troglodytes hypothetical protein XP_516202
            (LOC460074), mRNA
          Length = 10214

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 232  ctgcacacagcctgcctgaa 251
            ||||||||||||||||||||
Sbjct: 6418 ctgcacacagcctgcctgaa 6437
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>ref|XM_873163.1| PREDICTED: Bos taurus similar to retinoblastoma-binding protein 1
            isoform I, transcript variant 4 (LOC531515), mRNA
          Length = 5925

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4671 caatgtctgaataaatatat 4652
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>ref|XM_873064.1| PREDICTED: Bos taurus similar to retinoblastoma-binding protein 1
            isoform I, transcript variant 3 (LOC531515), mRNA
          Length = 5970

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4716 caatgtctgaataaatatat 4697
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>ref|XM_610013.2| PREDICTED: Bos taurus similar to retinoblastoma-binding protein 1
            isoform I, transcript variant 1 (LOC531515), mRNA
          Length = 5250

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 3996 caatgtctgaataaatatat 3977
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>ref|XM_864346.1| PREDICTED: Bos taurus similar to retinoblastoma-binding protein 1
            isoform I, transcript variant 2 (LOC531515), mRNA
          Length = 6132

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4878 caatgtctgaataaatatat 4859
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>gb|AC112794.4| Mus musculus chromosome 12 clone RP24-121O24, complete sequence
          Length = 171520

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    caatgtctgaataaatatat 88
             ||||||||||||||||||||
Sbjct: 31557 caatgtctgaataaatatat 31576
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>ref|XM_988474.1| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like)
            (Arid4a), mRNA
          Length = 5780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4965 caatgtctgaataaatatat 4946
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>ref|XM_898193.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 5 (Arid4a), mRNA
          Length = 4861

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4046 caatgtctgaataaatatat 4027
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>ref|XM_354675.4| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 1 (Arid4a), mRNA
          Length = 5780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4965 caatgtctgaataaatatat 4946
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>ref|XM_898206.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 6 (Arid4a), mRNA
          Length = 5743

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4928 caatgtctgaataaatatat 4909
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>ref|XM_923512.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 9 (Arid4a), mRNA
          Length = 4861

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4046 caatgtctgaataaatatat 4027
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>ref|XM_914992.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 7 (Arid4a), mRNA
          Length = 5780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4965 caatgtctgaataaatatat 4946
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>ref|XM_923528.2| PREDICTED: Mus musculus AT rich interactive domain 4A (Rbp1 like),
            transcript variant 12 (Arid4a), mRNA
          Length = 5743

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4928 caatgtctgaataaatatat 4909
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>gb|BC037715.1| Mus musculus AT rich interactive domain 4A (Rbp1 like), mRNA (cDNA
            clone IMAGE:4241494), partial cds
          Length = 3028

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 2957 caatgtctgaataaatatat 2938
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>gb|AC124728.5| Mus musculus BAC clone RP23-470C22 from chromosome 6, complete sequence
          Length = 183845

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     aataaatatatatgtaactaaagc 101
              |||||||||| |||||||||||||
Sbjct: 140757 aataaatataaatgtaactaaagc 140734
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>gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete sequence
          Length = 250147

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     tgtctgaataaatatatatg 91
              ||||||||||||||||||||
Sbjct: 127849 tgtctgaataaatatatatg 127868
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>ref|XM_537461.2| PREDICTED: Canis familiaris similar to retinoblastoma-binding protein
            1 isoform III, transcript variant 1 (LOC480339), mRNA
          Length = 5673

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4668 caatgtctgaataaatatat 4649
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>ref|XM_859819.1| PREDICTED: Canis familiaris similar to retinoblastoma-binding protein
            1 isoform III, transcript variant 2 (LOC480339), mRNA
          Length = 4786

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 3781 caatgtctgaataaatatat 3762
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>gb|AF067943.1| Caenorhabditis elegans cosmid F59B1, complete sequence
          Length = 43152

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    accagaaagcaagccaaaat 59
             ||||||||||||||||||||
Sbjct: 41973 accagaaagcaagccaaaat 41954
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>ref|XM_662867.1| Cryptosporidium hominis TU502 dolichyl phosphate
           glucosyltransferase (Chro.50118) partial mRNA
          Length = 1089

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 82  aatatatatgtaactaaagc 101
           ||||||||||||||||||||
Sbjct: 98  aatatatatgtaactaaagc 79
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>ref|NM_023001.1| Homo sapiens AT rich interactive domain 4A (RBP1-like) (ARID4A),
            transcript variant 3, mRNA
          Length = 4627

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4569 caatgtctgaataaatatat 4550
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>ref|NM_002892.2| Homo sapiens AT rich interactive domain 4A (RBP1-like) (ARID4A),
            transcript variant 1, mRNA
          Length = 4834

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4776 caatgtctgaataaatatat 4757
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>ref|NM_023000.1| Homo sapiens AT rich interactive domain 4A (RBP1-like) (ARID4A),
            transcript variant 2, mRNA
          Length = 4672

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4614 caatgtctgaataaatatat 4595
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>emb|CR392362.23| Zebrafish DNA sequence from clone DKEY-5B19 in linkage group 8,
             complete sequence
          Length = 114516

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ataaatatatatgtaactaa 98
             ||||||||||||||||||||
Sbjct: 77694 ataaatatatatgtaactaa 77675
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>emb|AL354829.8| Human DNA sequence from clone RP11-218B22 on chromosome 13 Contains the
             3' end of the DIAPH3 gene for diaphanous homolog 3
             (Drosophila), complete sequence
          Length = 154212

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    aataaatatatatgtaactaaagc 101
             ||||||||||||||||| ||||||
Sbjct: 98061 aataaatatatatgtaaataaagc 98038
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>emb|AL121581.41|HS1022E24 Human DNA sequence from clone RP5-1022E24 on chromosome 20 Contains the
             3' end of the OPRL1 gene for opiate receptor-like 1
             protein, the GPR8 gene encoding a G protein-coupled
             receptor, the KIAA0835 gene encoding a protein similar to 
             the myelin transcription factor 1 (MYT1), a novel gene, 7
             CpG islands, ESTs, STSs and GSSs, complete sequence
          Length = 179888

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   gcaaatgtttggtttccaaa 188
             ||||||||||||||||||||
Sbjct: 70743 gcaaatgtttggtttccaaa 70724
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>emb|AJ720708.1| Gallus gallus mRNA for hypothetical protein, clone 23o7
          Length = 4882

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4822 caatgtctgaataaatatat 4803
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>gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosome 12, complete sequence
          Length = 202583

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 70     aatgtctgaataaatatatatgta 93
              |||||||| |||||||||||||||
Sbjct: 142029 aatgtctgcataaatatatatgta 142006
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>ref|NM_001012902.1| Gallus gallus AT rich interactive domain 4A (RBP1-like) (ARID4A),
            mRNA
          Length = 4882

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4822 caatgtctgaataaatatat 4803
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>gb|AC117372.2| Homo sapiens 12 BAC RP11-266O15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165301

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 72     tgtctgaataaatatatatgtaactaaa 99
              |||||||||| | |||||||||||||||
Sbjct: 129930 tgtctgaatataaatatatgtaactaaa 129957
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>gb|AC118480.3| Homo sapiens BAC clone RP11-393K13 from 4, complete sequence
          Length = 108490

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   agatacacaatgtctgaata 81
            ||||||||||||||||||||
Sbjct: 2695 agatacacaatgtctgaata 2714
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>gb|AC073614.17| Homo sapiens Xp BAC RP11-617O8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 129801

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    tgaataaatatatatgtaactaaa 99
             ||||||||||||||||| ||||||
Sbjct: 44631 tgaataaatatatatgttactaaa 44608
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>gb|S66427.1| RBP1=retinoblastoma binding protein 1 [human, Nalm-6 pre-B cell
            leukemia, mRNA, 4834 nt]
          Length = 4834

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4776 caatgtctgaataaatatat 4757
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>ref|XM_626196.1| Cryptosporidium parvum Iowa II Alg5 like dolichyl-phosphate
           beta-glucosyltransferase (cgd5_2590), partial mRNA
          Length = 1089

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 82  aatatatatgtaactaaagc 101
           ||||||||||||||||||||
Sbjct: 98  aatatatatgtaactaaagc 79
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>emb|CR386280.1| Gallus gallus finished cDNA, clone ChEST57c20
          Length = 1141

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  caatgtctgaataaatatat 88
           ||||||||||||||||||||
Sbjct: 396 caatgtctgaataaatatat 377
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>dbj|AK033606.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
           library, clone:9130025L13 product:Similar to FGF
           receptor 4B, full insert sequence
          Length = 3378

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  tgtctgaataaatatatatg 91
           ||||||||||||||||||||
Sbjct: 349 tgtctgaataaatatatatg 330
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     aaatgtttggtttccaaagt 190
               ||||||||||||||||||||
Sbjct: 8990658 aaatgtttggtttccaaagt 8990639
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>gb|AC046130.25| Homo sapiens 12 BAC RP11-847H18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 176600

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 72    tgtctgaataaatatatatgtaactaaa 99
             |||||||||| | |||||||||||||||
Sbjct: 79850 tgtctgaatataaatatatgtaactaaa 79877
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>ref|NM_172891.1| Mus musculus serine/threonine/tyrosine kinase 1 (Styk1), mRNA
          Length = 3378

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 72  tgtctgaataaatatatatg 91
           ||||||||||||||||||||
Sbjct: 349 tgtctgaataaatatatatg 330
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>ref|XM_234281.3| PREDICTED: Rattus norvegicus AT rich interactive domain 4A (Rbp1
            like) (predicted) (Arid4a_predicted), mRNA
          Length = 4822

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   caatgtctgaataaatatat 88
            ||||||||||||||||||||
Sbjct: 4697 caatgtctgaataaatatat 4678
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>gb|AC006511.5| Homo sapiens 12 BAC RPCI11-69M1 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 186321

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    aaagcaagccaaaatccaga 64
             ||||||||||||||||||||
Sbjct: 40255 aaagcaagccaaaatccaga 40274
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>dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0045M11
          Length = 159148

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    aaatgtttggtttccaaagt 190
              ||||||||||||||||||||
Sbjct: 150965 aaatgtttggtttccaaagt 150946
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>dbj|AP005780.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0051H02
          Length = 136520

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   aaatgtttggtttccaaagt 190
             ||||||||||||||||||||
Sbjct: 34254 aaatgtttggtttccaaagt 34235
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>emb|CR383683.17| Zebrafish DNA sequence from clone DKEY-114C3 in linkage group 22,
            complete sequence
          Length = 153095

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 79   ataaatatatatgtaactaa 98
            ||||||||||||||||||||
Sbjct: 9470 ataaatatatatgtaactaa 9451
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>emb|BX000462.10| Zebrafish DNA sequence from clone DKEY-114F6 in linkage group 1, complete
              sequence
          Length = 167671

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 216    tgggccacaaatcaggctgcacac 239
              |||||||| |||||||||||||||
Sbjct: 161711 tgggccaccaatcaggctgcacac 161734
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>emb|AL139021.6|CNS01DX3 Human chromosome 14 DNA sequence BAC R-517O13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176343

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    caatgtctgaataaatatat 88
             ||||||||||||||||||||
Sbjct: 36523 caatgtctgaataaatatat 36504
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>emb|BX465834.20| Zebrafish DNA sequence from clone CH211-202E12 in linkage group 5,
              complete sequence
          Length = 176520

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     taaatatatatgtaactaaa 99
              ||||||||||||||||||||
Sbjct: 112632 taaatatatatgtaactaaa 112651
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>gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromosome unknown, complete
              sequence
          Length = 207441

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     caatgtctgaataaatatat 88
              ||||||||||||||||||||
Sbjct: 138623 caatgtctgaataaatatat 138642
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>gb|AC134594.5| Mus musculus BAC clone RP23-388B6 from 12, complete sequence
          Length = 194521

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 70     aatgtctgaataaatatatatgta 93
              |||||||| |||||||||||||||
Sbjct: 191891 aatgtctgcataaatatatatgta 191914
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>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199,
             complete sequence
          Length = 123325

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aataaatatatatgtaacta 97
             ||||||||||||||||||||
Sbjct: 36903 aataaatatatatgtaacta 36922
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>emb|AL714027.8| Mouse DNA sequence from clone RP23-96E23 on chromosome X, complete
             sequence
          Length = 175809

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    taaatatatatgtaactaaa 99
             ||||||||||||||||||||
Sbjct: 56171 taaatatatatgtaactaaa 56152


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,073,859
Number of Sequences: 3902068
Number of extensions: 4073859
Number of successful extensions: 93770
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93608
Number of HSP's gapped (non-prelim): 162
length of query: 265
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 243
effective length of database: 17,147,199,772
effective search space: 4166769544596
effective search space used: 4166769544596
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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