ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DDR1_HUMAN (Q08345) Epithelial discoidin domain-containing recep... 28 8.4
2DDR1_PANTR (Q7YR43) Epithelial discoidin domain-containing recep... 28 8.4

>DDR1_HUMAN (Q08345) Epithelial discoidin domain-containing receptor 1|
           precursor (EC 2.7.10.1) (Epithelial discoidin domain
           receptor 1) (Tyrosine kinase DDR) (Discoidin receptor
           tyrosine kinase) (Tyrosine-protein kinase CAK) (Cell
           adhesion kinase) (TRK E)
          Length = 913

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 215 GLRVGSTAPPSCPSGLVQCL--CMHVSERERPPW 120
           G +V  + PP+CP GL + +  C      +RPP+
Sbjct: 865 GRQVYLSRPPACPQGLYELMLRCWSRESEQRPPF 898



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>DDR1_PANTR (Q7YR43) Epithelial discoidin domain-containing receptor 1|
           precursor (EC 2.7.10.1) (Epithelial discoidin domain
           receptor 1) (Tyrosine kinase DDR) (Discoidin receptor
           tyrosine kinase) (CD167a antigen)
          Length = 909

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 215 GLRVGSTAPPSCPSGLVQCL--CMHVSERERPPW 120
           G +V  + PP+CP GL + +  C      +RPP+
Sbjct: 861 GRQVYLSRPPACPQGLYELMLRCWSRESEQRPPF 894


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,366,908
Number of Sequences: 219361
Number of extensions: 434197
Number of successful extensions: 937
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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