>SYFA_TROW8 (Q83HH3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 336

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +3

Query: 3   THNPSIHSLVHTLCSINLHCAQLGRG---HLARSMMMIQINTQSTCSYTLIHDVQVHMHI 173
           TH P  H L   +C  N+    L +G    LAR +   ++N +  C+Y    +      I
Sbjct: 208 THTPVFHQLEGLVCDRNITLGHL-KGTVEDLARYLFGAEVNLRMRCNYFPFTEPSAEFDI 266

Query: 174 SSDG 185
           S DG
Sbjct: 267 SRDG 270

>PYRB_BIFLO (Q8G655) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 326

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 3   THNPSIHSLVHTLCSI-NLHCAQLGRGHLARSMMMI-QINTQSTCSYTLIHDV 155
           T   ++HSL+ TLC   N+    +    L     +I +IN   +CSY  + D+
Sbjct: 167 TFGRTVHSLIETLCRFGNVRFVLISPDELKTPQYVIDRINATDSCSYVEVRDL 219

>UVRA_CHLTR (O84337) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 1786

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = +3

Query: 12  PSIHSLVHTLCSINLHCAQLGRGHLARSMMMIQINTQSTCSYTLIHDVQVHMHISSDGQT 191
           PSIH  + TLC++ L    LGR   + S   IQ   +   +Y L+  V+       D  T
Sbjct: 780 PSIHQKIETLCTLGLQYLPLGRPLYSLSGGEIQ---RLKLAYELLAPVKHPTLYVLDEPT 836

Query: 192 DGC*TH 209
            G  TH
Sbjct: 837 TGLHTH 842

>UVRA_CHLPN (Q9Z985) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 1826

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 9   NPSIHSLVHTLCSINLHCAQLGR 77
           +P IH  +H LCS+ L    LGR
Sbjct: 781 HPKIHEKIHALCSLRLDYLPLGR 803

>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)|
          Length = 541

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 273 HRRPSEQQRVGLRHQLRPRKLNVFSSHPSVHRTRYACVLVRRGSTCS 133
           H++P +QQ+  L HQ +P++      H   H    A  + RR S+ S
Sbjct: 356 HQQPQQQQQQQLHHQQQPQQ----HQHQQQHPDSTATDVARRSSSSS 398

>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit|
           (Voltage-gated calcium channel alpha subunit Cav1.2)
           (Calcium channel, L type, alpha-1 polypeptide, isoform
           1, cardiac muscle) (Smooth muscle calcium channel
           blocker receptor)
          Length = 2171

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 105 IQINTQSTCSYTLIHDVQV-HMHISSDGQTDG 197
           +   T+STC  T++H+ Q+ H +IS  G   G
Sbjct: 20  LSAETESTCKGTVVHEAQLNHFYISPGGSNYG 51

>SYFA_TROWT (Q83GS9) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 336

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +3

Query: 3   THNPSIHSLVHTLCSINLHCAQLGRG---HLARSMMMIQINTQSTCSYTLIHDVQVHMHI 173
           TH P  H L   +C  N+    L +G    LA  +   ++N +  C+Y    +      I
Sbjct: 208 THTPVFHQLEGLVCDRNITLGHL-KGTVEDLAGYLFGAEVNLRMRCNYFPFTEPSAEFDI 266

Query: 174 SSDG 185
           S DG
Sbjct: 267 SRDG 270

>RECN_XYLFT (Q87BS5) DNA repair protein recN (Recombination protein N)|
          Length = 557

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 18  IHSLVHTLCSINLHCAQLGRGHLARSMMMIQINTQSTCSYTLIHDVQV 161
           +H+  HTL  +N H A+LG         MIQ++   T    + +D+ +
Sbjct: 245 LHAARHTLSRVNEHDARLGEVETLLDNAMIQVDEALTLLDRIHNDLNI 292


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,110,547
Number of Sequences: 219361
Number of extensions: 706730
Number of successful extensions: 2148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2145
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)