ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LYPA3_MOUSE (Q8VEB4) 1-O-acylceramide synthase precursor (EC 2.3... 29 3.6
2ZRP4_MAIZE (P47917) O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT) 29 3.6
3MDR20_ARATH (Q9LSJ5) Putative multidrug resistance protein 20 (P... 28 4.7

>LYPA3_MOUSE (Q8VEB4) 1-O-acylceramide synthase precursor (EC 2.3.1.-) (ACS)|
           (Lysosomal phospholipase A2) (Lysophospholipase 3)
           (LCAT-like lysophospholipase) (LLPL)
          Length = 412

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 74  ILANLRQSIY--FFHQSRPSIHKQSTLHAWVHQGTPW 178
           ++A+   ++Y  +F Q +P + K   +HA+V  G PW
Sbjct: 194 LVAHSMGNVYMLYFLQRQPQVWKDKYIHAFVSLGAPW 230



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>ZRP4_MAIZE (P47917) O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT)|
          Length = 364

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 261 FSDYKIVKRLGARGVIEVY 205
           +SDY+I+  LG R +IEVY
Sbjct: 345 YSDYRIIPVLGVRSIIEVY 363



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>MDR20_ARATH (Q9LSJ5) Putative multidrug resistance protein 20 (P-glycoprotein|
           18)
          Length = 1225

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = -2

Query: 161 VPKHAVCFVYV----WMVCFDEKNKWTALG 84
           V K+AV  VYV    W++CF E   WT  G
Sbjct: 65  VAKNAVALVYVACASWVICFIEGYCWTRTG 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,038,985
Number of Sequences: 219361
Number of extensions: 707616
Number of successful extensions: 1769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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