ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-... 29 3.7
2UBP30_HUMAN (Q70CQ3) Ubiquitin carboxyl-terminal hydrolase 30 (E... 28 6.3

>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 735

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 167 WWPLSLSLTCMHRH*TRPDGHD 232
           WWP  L+L+ +H+H  + + HD
Sbjct: 31  WWPNQLNLSILHQHDRKTNPHD 52



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>UBP30_HUMAN (Q70CQ3) Ubiquitin carboxyl-terminal hydrolase 30 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 30)
           (Ubiquitin-specific-processing protease 30)
           (Deubiquitinating enzyme 30)
          Length = 517

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 216 LVQCLCMHVSERERGHHGSPFSLISYYSLSPLMLSNYY 103
           L QCLC+H+       HG+P     +   +  ++ + Y
Sbjct: 317 LPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIY 354


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,856,263
Number of Sequences: 219361
Number of extensions: 494062
Number of successful extensions: 1006
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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