| Clone Name | rbaet56e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase mRNA, complete cds Length = 1092 Score = 274 bits (138), Expect = 7e-71 Identities = 138/138 (100%) Strand = Plus / Minus Query: 9 cacagccttcttaatttattcatcgcacggagcgggtatagaaatggaatcgcaggtggc 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1043 cacagccttcttaatttattcatcgcacggagcgggtatagaaatggaatcgcaggtggc 984 Query: 69 aactcggtgctgcccccaccgaagaccagggttgacacatgacacacacatagagcagga 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 983 aactcggtgctgcccccaccgaagaccagggttgacacatgacacacacatagagcagga 924 Query: 129 gagcacaacacgcaccca 146 |||||||||||||||||| Sbjct: 923 gagcacaacacgcaccca 906
>emb|AJ414697.1|TAE414697 Triticum aestivum mRNA for glutathione transferase (gstu1A gene) Length = 1085 Score = 117 bits (59), Expect = 9e-24 Identities = 69/71 (97%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 49 gaaatggaatcgcaggtggcaactcggtgctgcccccaccgaagaccagggttgacaca- 107 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1023 gaaatggaatggcaggtggcaactcggtgctgcccccaccgaagaccagggttgacacat 964 Query: 108 tgacacacaca 118 ||||||||||| Sbjct: 963 tgacacacaca 953
>gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full insert mRNA sequence Length = 1966 Score = 54.0 bits (27), Expect = 1e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 77 gctgcccccaccgaagaccagggttgacaca-tgacacacaca 118 |||||| |||| ||||||||||||||||||| ||||||||||| Sbjct: 990 gctgccaccactgaagaccagggttgacacattgacacacaca 948 Score = 46.1 bits (23), Expect = 0.029 Identities = 23/23 (100%) Strand = Plus / Minus Query: 17 tcttaatttattcatcgcacgga 39 ||||||||||||||||||||||| Sbjct: 1030 tcttaatttattcatcgcacgga 1008
>emb|AJ414699.1|TAE414699 Triticum aestivum mRNA for glutathione transferase (gstu1C gene) Length = 1008 Score = 54.0 bits (27), Expect = 1e-04 Identities = 50/58 (86%), Gaps = 6/58 (10%) Strand = Plus / Minus Query: 14 ccttcttaatttattcatcgcacggagcgggtatagaaatggaatcgcaggtggcaac 71 |||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 984 ccttcttaatttattcatcgcacgga------atgaaaatggaatcgcaggtggcaac 933
>gb|AY550532.1| Salmo salar clone Hae459R microsatellite sequence Length = 463 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 caactcggtgctgcccccacc 88 ||||||||||||||||||||| Sbjct: 76 caactcggtgctgcccccacc 96
>gb|AC161890.4| Mus musculus 6 BAC RP23-356P12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 243990 Score = 42.1 bits (21), Expect = 0.45 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 agggttgacacatgacacacacata 120 |||| |||||||||||||||||||| Sbjct: 157300 agggatgacacatgacacacacata 157324
>gb|AC153576.3| Mus musculus 6 BAC RP23-330J17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215953 Score = 42.1 bits (21), Expect = 0.45 Identities = 24/25 (96%) Strand = Plus / Minus Query: 96 agggttgacacatgacacacacata 120 |||| |||||||||||||||||||| Sbjct: 200389 agggatgacacatgacacacacata 200365
>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24 Length = 299050 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 gcaactcggtgctgcccccaccga 90 |||||||||||||||| ||||||| Sbjct: 157810 gcaactcggtgctgcctccaccga 157833
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccttcttaatttattcatcg 33 |||||||||||||||||||| Sbjct: 4116807 ccttcttaatttattcatcg 4116826
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccttcttaatttattcatcg 33 |||||||||||||||||||| Sbjct: 26821 ccttcttaatttattcatcg 26840
>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21 Length = 170051 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccttcttaatttattcatcg 33 |||||||||||||||||||| Sbjct: 163473 ccttcttaatttattcatcg 163492
>dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2258N2, complete sequences Length = 174548 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 caactcggtgctgcccccac 87 |||||||||||||||||||| Sbjct: 75707 caactcggtgctgcccccac 75688
>emb|BX088570.6| Mouse DNA sequence from clone RP23-292J1 on chromosome 4, complete sequence Length = 244187 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ccagggttgacacatgacac 113 |||||||||||||||||||| Sbjct: 182527 ccagggttgacacatgacac 182546
>gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, complete sequence Length = 152173 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 acacacacatagagcagga 128 ||||||||||||||||||| Sbjct: 10627 acacacacatagagcagga 10645
>emb|AJ414698.1|TAE414698 Triticum aestivum mRNA for glutathione transferase (gstu1B gene) Length = 1051 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 tcttaatttattcatcgcacgga 39 ||||||||||||| ||||||||| Sbjct: 1006 tcttaatttattcctcgcacgga 984
>gb|AC091654.4| Homo sapiens BAC clone RP11-177C9 from 7, complete sequence Length = 116507 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 cacagccttcttaatttat 27 ||||||||||||||||||| Sbjct: 11951 cacagccttcttaatttat 11969
>gb|AC008099.5| Drosophila melanogaster, chromosome 2L, region 25A-25A, BAC clone BACR37J18, complete sequence Length = 199916 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 aggggacccacagccttct 19 ||||||||||||||||||| Sbjct: 41890 aggggacccacagccttct 41872
>gb|AC009845.7|AC009845 Drosophila melanogaster, chromosome 2L, region 25A-25B, BAC clone BACR04C19, complete sequence Length = 183766 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 aggggacccacagccttct 19 ||||||||||||||||||| Sbjct: 159370 aggggacccacagccttct 159352
>gb|AC123023.4| Homo sapiens 3 BAC RP11-727M21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183779 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 87 ccgaagaccagggttgacacatg 109 ||||||||||||| ||||||||| Sbjct: 120267 ccgaagaccaggggtgacacatg 120289
>gb|AC096670.1| Homo sapiens BAC clone RP11-438K19 from 2, complete sequence Length = 181497 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 110 acacacacatagagcaggagagc 132 |||||||||| |||||||||||| Sbjct: 156859 acacacacatggagcaggagagc 156837
>gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 120070 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 14 ccttcttaatttattcatc 32 ||||||||||||||||||| Sbjct: 44358 ccttcttaatttattcatc 44340
>gb|AC102905.9| Mus musculus chromosome 15, clone RP24-303N12, complete sequence Length = 153799 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 acacacacatagagcagga 128 ||||||||||||||||||| Sbjct: 106592 acacacacatagagcagga 106610
>gb|AE003575.5| Drosophila melanogaster chromosome 2L, section 16 of 83 of the complete sequence Length = 330399 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 aggggacccacagccttct 19 ||||||||||||||||||| Sbjct: 112172 aggggacccacagccttct 112190 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,621,388 Number of Sequences: 3902068 Number of extensions: 1621388 Number of successful extensions: 98514 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98445 Number of HSP's gapped (non-prelim): 69 length of query: 146 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 125 effective length of database: 17,151,101,840 effective search space: 2143887730000 effective search space used: 2143887730000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)