ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase... 274 7e-71
2emb|AJ414697.1|TAE414697 Triticum aestivum mRNA for glutathione ... 117 9e-24
3gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full... 54 1e-04
4emb|AJ414699.1|TAE414699 Triticum aestivum mRNA for glutathione ... 54 1e-04
5gb|AY550532.1| Salmo salar clone Hae459R microsatellite sequence 42 0.45
6gb|AC161890.4| Mus musculus 6 BAC RP23-356P12 (Roswell Park Canc... 42 0.45
7gb|AC153576.3| Mus musculus 6 BAC RP23-330J17 (Roswell Park Canc... 42 0.45
8emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment ... 40 1.8
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
10dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
11dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
12dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 1.8
13emb|BX088570.6| Mouse DNA sequence from clone RP23-292J1 on chro... 40 1.8
14gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, co... 38 7.0
15emb|AJ414698.1|TAE414698 Triticum aestivum mRNA for glutathione ... 38 7.0
16gb|AC091654.4| Homo sapiens BAC clone RP11-177C9 from 7, complet... 38 7.0
17gb|AC008099.5| Drosophila melanogaster, chromosome 2L, region 25... 38 7.0
18gb|AC009845.7|AC009845 Drosophila melanogaster, chromosome 2L, r... 38 7.0
19gb|AC123023.4| Homo sapiens 3 BAC RP11-727M21 (Roswell Park Canc... 38 7.0
20gb|AC096670.1| Homo sapiens BAC clone RP11-438K19 from 2, comple... 38 7.0
21gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Canc... 38 7.0
22gb|AC102905.9| Mus musculus chromosome 15, clone RP24-303N12, co... 38 7.0
23gb|AE003575.5| Drosophila melanogaster chromosome 2L, section 16... 38 7.0

>gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase mRNA, complete cds
          Length = 1092

 Score =  274 bits (138), Expect = 7e-71
 Identities = 138/138 (100%)
 Strand = Plus / Minus

                                                                        
Query: 9    cacagccttcttaatttattcatcgcacggagcgggtatagaaatggaatcgcaggtggc 68
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 cacagccttcttaatttattcatcgcacggagcgggtatagaaatggaatcgcaggtggc 984

                                                                        
Query: 69   aactcggtgctgcccccaccgaagaccagggttgacacatgacacacacatagagcagga 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  aactcggtgctgcccccaccgaagaccagggttgacacatgacacacacatagagcagga 924

                              
Query: 129  gagcacaacacgcaccca 146
            ||||||||||||||||||
Sbjct: 923  gagcacaacacgcaccca 906



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>emb|AJ414697.1|TAE414697 Triticum aestivum mRNA for glutathione transferase (gstu1A gene)
          Length = 1085

 Score =  117 bits (59), Expect = 9e-24
 Identities = 69/71 (97%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                        
Query: 49   gaaatggaatcgcaggtggcaactcggtgctgcccccaccgaagaccagggttgacaca- 107
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1023 gaaatggaatggcaggtggcaactcggtgctgcccccaccgaagaccagggttgacacat 964

                       
Query: 108  tgacacacaca 118
            |||||||||||
Sbjct: 963  tgacacacaca 953



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>gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full insert mRNA
           sequence
          Length = 1966

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 40/43 (93%), Gaps = 1/43 (2%)
 Strand = Plus / Minus

                                                      
Query: 77  gctgcccccaccgaagaccagggttgacaca-tgacacacaca 118
           |||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 990 gctgccaccactgaagaccagggttgacacattgacacacaca 948



 Score = 46.1 bits (23), Expect = 0.029
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 17   tcttaatttattcatcgcacgga 39
            |||||||||||||||||||||||
Sbjct: 1030 tcttaatttattcatcgcacgga 1008



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>emb|AJ414699.1|TAE414699 Triticum aestivum mRNA for glutathione transferase (gstu1C gene)
          Length = 1008

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 50/58 (86%), Gaps = 6/58 (10%)
 Strand = Plus / Minus

                                                                     
Query: 14  ccttcttaatttattcatcgcacggagcgggtatagaaatggaatcgcaggtggcaac 71
           ||||||||||||||||||||||||||      ||  ||||||||||||||||||||||
Sbjct: 984 ccttcttaatttattcatcgcacgga------atgaaaatggaatcgcaggtggcaac 933



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>gb|AY550532.1| Salmo salar clone Hae459R microsatellite sequence
          Length = 463

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 68 caactcggtgctgcccccacc 88
          |||||||||||||||||||||
Sbjct: 76 caactcggtgctgcccccacc 96



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>gb|AC161890.4| Mus musculus 6 BAC RP23-356P12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 243990

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 96     agggttgacacatgacacacacata 120
              |||| ||||||||||||||||||||
Sbjct: 157300 agggatgacacatgacacacacata 157324



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>gb|AC153576.3| Mus musculus 6 BAC RP23-330J17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215953

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 96     agggttgacacatgacacacacata 120
              |||| ||||||||||||||||||||
Sbjct: 200389 agggatgacacatgacacacacata 200365



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>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24
          Length = 299050

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 67     gcaactcggtgctgcccccaccga 90
              |||||||||||||||| |||||||
Sbjct: 157810 gcaactcggtgctgcctccaccga 157833



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 14      ccttcttaatttattcatcg 33
               ||||||||||||||||||||
Sbjct: 4116807 ccttcttaatttattcatcg 4116826



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>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_E05
          Length = 116305

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ccttcttaatttattcatcg 33
             ||||||||||||||||||||
Sbjct: 26821 ccttcttaatttattcatcg 26840



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>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073A21
          Length = 170051

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     ccttcttaatttattcatcg 33
              ||||||||||||||||||||
Sbjct: 163473 ccttcttaatttattcatcg 163492



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>dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2258N2, complete
             sequences
          Length = 174548

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    caactcggtgctgcccccac 87
             ||||||||||||||||||||
Sbjct: 75707 caactcggtgctgcccccac 75688



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>emb|BX088570.6| Mouse DNA sequence from clone RP23-292J1 on chromosome 4, complete
              sequence
          Length = 244187

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     ccagggttgacacatgacac 113
              ||||||||||||||||||||
Sbjct: 182527 ccagggttgacacatgacac 182546



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>gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, complete sequence
          Length = 152173

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 110   acacacacatagagcagga 128
             |||||||||||||||||||
Sbjct: 10627 acacacacatagagcagga 10645



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>emb|AJ414698.1|TAE414698 Triticum aestivum mRNA for glutathione transferase (gstu1B gene)
          Length = 1051

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 17   tcttaatttattcatcgcacgga 39
            ||||||||||||| |||||||||
Sbjct: 1006 tcttaatttattcctcgcacgga 984



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>gb|AC091654.4| Homo sapiens BAC clone RP11-177C9 from 7, complete sequence
          Length = 116507

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     cacagccttcttaatttat 27
             |||||||||||||||||||
Sbjct: 11951 cacagccttcttaatttat 11969



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>gb|AC008099.5| Drosophila melanogaster, chromosome 2L, region 25A-25A, BAC clone
             BACR37J18, complete sequence
          Length = 199916

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     aggggacccacagccttct 19
             |||||||||||||||||||
Sbjct: 41890 aggggacccacagccttct 41872



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>gb|AC009845.7|AC009845 Drosophila melanogaster, chromosome 2L, region 25A-25B, BAC clone
              BACR04C19, complete sequence
          Length = 183766

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      aggggacccacagccttct 19
              |||||||||||||||||||
Sbjct: 159370 aggggacccacagccttct 159352



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>gb|AC123023.4| Homo sapiens 3 BAC RP11-727M21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183779

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 87     ccgaagaccagggttgacacatg 109
              ||||||||||||| |||||||||
Sbjct: 120267 ccgaagaccaggggtgacacatg 120289



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>gb|AC096670.1| Homo sapiens BAC clone RP11-438K19 from 2, complete sequence
          Length = 181497

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 110    acacacacatagagcaggagagc 132
              |||||||||| ||||||||||||
Sbjct: 156859 acacacacatggagcaggagagc 156837



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>gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120070

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 14    ccttcttaatttattcatc 32
             |||||||||||||||||||
Sbjct: 44358 ccttcttaatttattcatc 44340



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>gb|AC102905.9| Mus musculus chromosome 15, clone RP24-303N12, complete sequence
          Length = 153799

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 110    acacacacatagagcagga 128
              |||||||||||||||||||
Sbjct: 106592 acacacacatagagcagga 106610



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>gb|AE003575.5| Drosophila melanogaster chromosome 2L, section 16 of 83 of the complete
              sequence
          Length = 330399

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      aggggacccacagccttct 19
              |||||||||||||||||||
Sbjct: 112172 aggggacccacagccttct 112190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,621,388
Number of Sequences: 3902068
Number of extensions: 1621388
Number of successful extensions: 98514
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98445
Number of HSP's gapped (non-prelim): 69
length of query: 146
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 125
effective length of database: 17,151,101,840
effective search space: 2143887730000
effective search space used: 2143887730000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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