ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YWV3_CAEEL (Q11077) Hypothetical protein B0403.3 precursor 29 3.9
2T4BB_BACCO (Q07606) Restriction enzyme BgcI beta subunit (EC 3.1... 28 6.6
3Y755_GLUOX (O05543) Hypothetical transport protein GOX0755 28 6.6

>YWV3_CAEEL (Q11077) Hypothetical protein B0403.3 precursor|
          Length = 270

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 53  SAIKQYSISKLKN--LGLNKATQPRLYSNFCRNTKISKQERISAIHMPLY 196
           S +K Y  S L+     LNK  Q  LYS+FCR     + E     +M  Y
Sbjct: 201 SVVKSYYDSYLEREYTELNKDDQDELYSSFCRRVTPGQDENEFTANMTRY 250



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>T4BB_BACCO (Q07606) Restriction enzyme BgcI beta subunit (EC 3.1.21.-)|
           (S.BcgI)
          Length = 341

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +3

Query: 39  IISYTQRLNNTRFRSLKILV*TR--QPSLGFIQTFV-EIRKSRNKN 167
           + SY+  +N+TR +SLKIL+  +  +P   ++ T++ +I  +  KN
Sbjct: 116 MFSYSYTINSTRLKSLKILLPIKGEEPDWDYMNTYISKILSNMEKN 161



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>Y755_GLUOX (O05543) Hypothetical transport protein GOX0755|
          Length = 739

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 14  FLSCMGEVHYIIHSAIKQYSISKLKNLGLNKATQPRLYSNF 136
           F   M    YI+   + + SIS L  LGL K T+ +L S F
Sbjct: 170 FAISMSRATYILLGIVLEASISGLFQLGLTKRTRHQLASTF 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,104,953
Number of Sequences: 219361
Number of extensions: 401651
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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