ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL034371.16|HS273F20 Human DNA sequence from clone RP1-273F2... 42 0.64
2emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 i... 40 2.5
3emb|AL589846.5| Human DNA sequence from clone RP11-199O16 on chr... 40 2.5
4emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chr... 40 2.5
5gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cance... 40 2.5
6gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds 40 2.5
7gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, comp... 40 2.5
8emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in... 40 2.5

>emb|AL034371.16|HS273F20 Human DNA sequence from clone RP1-273F20 on chromosome 6q16.1-16.3
             Contains the gene for a novel protein and a CpG island,
             complete sequence
          Length = 111253

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 28    gggagaggtccattatatcatacactcag 56
             |||||||| |||||| |||||||||||||
Sbjct: 45070 gggagaggaccattagatcatacactcag 45098



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>emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 in linkage group 10,
            complete sequence
          Length = 200648

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   cactcagcgattaaacaata 69
            ||||||||||||||||||||
Sbjct: 7575 cactcagcgattaaacaata 7594



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>emb|AL589846.5| Human DNA sequence from clone RP11-199O16 on chromosome 9, complete
             sequence
          Length = 44495

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   ttcaaacttttgtagaaata 146
             ||||||||||||||||||||
Sbjct: 30394 ttcaaacttttgtagaaata 30413



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>emb|AL357060.31| Human DNA sequence from clone RP11-356I2 on chromosome 6 Contains
            three novel genes, the TNFAIP3 gene for tumour necrosis
            factor alpha-induced protein 3 and a CpG island, complete
            sequence
          Length = 182209

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    tacatttcctttcatgcatg 28
            ||||||||||||||||||||
Sbjct: 8462 tacatttcctttcatgcatg 8481



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>gb|AC133480.2| Homo sapiens 12 BAC RP11-12K6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128301

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 140    agaaatacgaaaatctcgaaacaa 163
              ||||||| ||||||||||||||||
Sbjct: 112244 agaaataggaaaatctcgaaacaa 112267



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>gb|BC032871.2| Homo sapiens cDNA clone IMAGE:5264902, partial cds
          Length = 3421

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 100 aaacaaggcaacccagcctaggct 123
           ||||||||||||||||||| ||||
Sbjct: 669 aaacaaggcaacccagcctgggct 646



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>gb|AC026801.7| Homo sapiens chromosome 5 clone CTD-2517O10, complete sequence
          Length = 177284

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 100    aaacaaggcaacccagcctaggct 123
              ||||||||||||||||||| ||||
Sbjct: 109248 aaacaaggcaacccagcctgggct 109225



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>emb|CR925751.6| Zebrafish DNA sequence from clone DKEY-264M23 in linkage group 10,
              complete sequence
          Length = 111720

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     cactcagcgattaaacaata 69
              ||||||||||||||||||||
Sbjct: 101117 cactcagcgattaaacaata 101136


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,753,728
Number of Sequences: 3902068
Number of extensions: 1753728
Number of successful extensions: 114340
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114326
Number of HSP's gapped (non-prelim): 14
length of query: 202
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 180
effective length of database: 17,147,199,772
effective search space: 3086495958960
effective search space used: 3086495958960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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