| Clone Name | rbaet56e07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC096747.3| Homo sapiens BAC clone RP11-396I22 from 4, complete sequence Length = 206789 Score = 42.1 bits (21), Expect = 0.42 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 acaaggaaaacaaaaagcaat 117 ||||||||||||||||||||| Sbjct: 170719 acaaggaaaacaaaaagcaat 170739
>emb|AL807247.10| Mouse DNA sequence from clone RP23-178D3 on chromosome 4, complete sequence Length = 184686 Score = 42.1 bits (21), Expect = 0.42 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 aggaaaacaaaaagcaatcac 120 ||||||||||||||||||||| Sbjct: 62011 aggaaaacaaaaagcaatcac 62031
>gb|AY663415.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA03715 MHC class II antigen (HLA-DQB1) gene, MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*0103 allele, and MHC class II antigen (HLA-DRB1) gene, complete cds Length = 100761 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtagcagcacaatacgtaca 64 |||||||||||||||||||| Sbjct: 94429 gtagcagcacaatacgtaca 94448
>gb|AY663413.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14663 MHC class II antigen (HLA-DQB1) gene, MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*010201 allele, and MHC class II antigen (HLA-DRB1) gene, complete cds Length = 117527 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtagcagcacaatacgtaca 64 |||||||||||||||||||| Sbjct: 111189 gtagcagcacaatacgtaca 111208
>gb|AY663412.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC class II antigen (HLA-DQB1) gene, MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110101 allele, complete cds Length = 108785 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtagcagcacaatacgtaca 64 |||||||||||||||||||| Sbjct: 84315 gtagcagcacaatacgtaca 84334
>gb|AY663408.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA04535 MHC class II antigen (HLA-DQB1) gene, MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC class II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*140501 allele, complete cds Length = 100515 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtagcagcacaatacgtaca 64 |||||||||||||||||||| Sbjct: 89359 gtagcagcacaatacgtaca 89378
>gb|AY663405.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC class II antigen (HLA-DQB1) gene, MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC class II antigen (HLA-DRB1) gene, complete cds Length = 116082 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtagcagcacaatacgtaca 64 |||||||||||||||||||| Sbjct: 91683 gtagcagcacaatacgtaca 91702
>gb|AY663402.1| Gorilla gorilla voucher Coriell Cell Repository DNA sample NG05251 MHC class II antigen (HLA-DRB1) gene, complete cds Length = 54488 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtagcagcacaatacgtaca 64 |||||||||||||||||||| Sbjct: 50733 gtagcagcacaatacgtaca 50752
>gb|AY663397.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01960 MHC class II antigen (HLA-DQB1), MHC class II antigen (HLA-DQA1), and MHC class II antigen (HLA-DRB1) genes, complete cds Length = 94591 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtagcagcacaatacgtaca 64 |||||||||||||||||||| Sbjct: 84520 gtagcagcacaatacgtaca 84539
>gb|AY663394.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14661 MHC class II antigen (HLA-DQB1) gene, MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110401 allele, complete cds Length = 127159 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gtagcagcacaatacgtaca 64 |||||||||||||||||||| Sbjct: 103780 gtagcagcacaatacgtaca 103799
>gb|AC127580.3| Mus musculus BAC clone RP23-447P16 from chromosome 12, complete sequence Length = 175727 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 acagccacacgtacaaggaaaaca 108 |||||||||| ||||||||||||| Sbjct: 142182 acagccacacatacaaggaaaaca 142159
>gb|AC122023.3| Mus musculus BAC clone RP24-372O13 from 12, complete sequence Length = 179947 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 acagccacacgtacaaggaaaaca 108 |||||||||| ||||||||||||| Sbjct: 2749 acagccacacatacaaggaaaaca 2726
>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete sequence Length = 175757 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 gaaaacaaaaagcaatcacgtgta 125 |||||||||||||||||| ||||| Sbjct: 48854 gaaaacaaaaagcaatcaagtgta 48831
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 cacacgtacaaggaaaacaaaaag 113 |||||||| ||||||||||||||| Sbjct: 11848256 cacacgtaaaaggaaaacaaaaag 11848233
>emb|AJ627213.1| Gallus gallus primary C-C chemokine receptor cluster Length = 210954 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 caaggaaaacaaaaagcaat 117 |||||||||||||||||||| Sbjct: 108734 caaggaaaacaaaaagcaat 108715
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1012D10 Length = 168267 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 cacacgtacaaggaaaacaaaaag 113 |||||||| ||||||||||||||| Sbjct: 60541 cacacgtaaaaggaaaacaaaaag 60518
>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence Length = 209825 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 ggaaaacaaaaagcaatca 119 ||||||||||||||||||| Sbjct: 118221 ggaaaacaaaaagcaatca 118239
>gb|AC135668.5| Mus musculus BAC clone RP23-280P7 from chromosome 6, complete sequence Length = 207975 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 acaaggaaaacaaaaagca 115 ||||||||||||||||||| Sbjct: 147994 acaaggaaaacaaaaagca 147976
>gb|AY463155.1| Dermatobia hominis mitochondrion, complete genome Length = 16360 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 agtccaaatttaattagta 28 ||||||||||||||||||| Sbjct: 7727 agtccaaatttaattagta 7709
>ref|XM_456656.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A07700g) partial mRNA Length = 1233 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 90 cacacgtacaaggaaaacaaaaa 112 ||||||||||||| ||||||||| Sbjct: 896 cacacgtacaaggtaaacaaaaa 918
>gb|AC125175.4| Mus musculus BAC clone RP24-572I8 from chromosome 6, complete sequence Length = 167991 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 acaaggaaaacaaaaagca 115 ||||||||||||||||||| Sbjct: 165216 acaaggaaaacaaaaagca 165234
>gb|AC122459.2| Mus musculus BAC clone RP24-273F21 from chromosome 15, complete sequence Length = 156807 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 cacacgtacaaggaaaaca 108 ||||||||||||||||||| Sbjct: 43733 cacacgtacaaggaaaaca 43751
>gb|AC122035.2| Mus musculus BAC clone RP24-414B1 from 15, complete sequence Length = 179617 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 cacacgtacaaggaaaaca 108 ||||||||||||||||||| Sbjct: 167952 cacacgtacaaggaaaaca 167970
>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii Length = 1249565 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 90 cacacgtacaaggaaaacaaaaa 112 ||||||||||||| ||||||||| Sbjct: 616697 cacacgtacaaggtaaacaaaaa 616719
>gb|AC002524.1| Homo sapiens x BAC GS1-257G1 (Genome Systems Human BAC Library) complete sequence Length = 202540 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 aaaagcaatcacgtgtaca 127 ||||||||||||||||||| Sbjct: 179916 aaaagcaatcacgtgtaca 179898
>gb|AC092544.4| Homo sapiens BAC clone RP11-317F4 from 4, complete sequence Length = 159263 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 gtacaaggaaaacaaaaag 113 ||||||||||||||||||| Sbjct: 138279 gtacaaggaaaacaaaaag 138261
>gb|AC161266.2| Mus musculus BAC clone RP23-231B13 from chromosome 13, complete sequence Length = 190192 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gtacaaggaaaacaaaaag 113 ||||||||||||||||||| Sbjct: 82739 gtacaaggaaaacaaaaag 82757
>gb|AC012097.8| Drosophila melanogaster, chromosome X, region 16F-16F, BAC clone BACR29H04, complete sequence Length = 155670 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 4 agatacagtccaaatttaattag 26 ||||| ||||||||||||||||| Sbjct: 66890 agataaagtccaaatttaattag 66868
>gb|AC154751.2| Mus musculus BAC clone RP24-399L21 from chromosome 14, complete sequence Length = 176992 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 acaaggaaaacaaaaagca 115 ||||||||||||||||||| Sbjct: 30628 acaaggaaaacaaaaagca 30646
>gb|AC012163.13|AC012163 Drosophila melanogaster, chromosome X, region 16F-16F, BAC clone BACR17D02, complete sequence Length = 186748 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 4 agatacagtccaaatttaattag 26 ||||| ||||||||||||||||| Sbjct: 45724 agataaagtccaaatttaattag 45746
>gb|AC154245.2| Mus musculus BAC clone RP24-326A24 from chromosome 14, complete sequence Length = 185892 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 acaaggaaaacaaaaagca 115 ||||||||||||||||||| Sbjct: 20941 acaaggaaaacaaaaagca 20923
>dbj|AB121219.1| Staphylococcus aureus DNA, type-V staphylococcal cassette chromosome mec, strain :JCSC3624(WIS) Length = 28612 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 caaggaaaacaaaaagcaa 116 ||||||||||||||||||| Sbjct: 24430 caaggaaaacaaaaagcaa 24412
>gb|AE003507.3| Drosophila melanogaster chromosome X, section 59 of 74 of the complete sequence Length = 299804 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 4 agatacagtccaaatttaattag 26 ||||| ||||||||||||||||| Sbjct: 100897 agataaagtccaaatttaattag 100919
>gb|AC164420.4| Mus musculus chromosome 8, clone RP24-388L13, complete sequence Length = 174120 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 caaggaaaacaaaaagcaa 116 ||||||||||||||||||| Sbjct: 74273 caaggaaaacaaaaagcaa 74255
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 aaggaaaacaaaaagcaat 117 ||||||||||||||||||| Sbjct: 701250 aaggaaaacaaaaagcaat 701232
>gb|AC140446.5| Mus musculus BAC clone RP24-114J11 from chromosome 8, complete sequence Length = 152392 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 caaggaaaacaaaaagcaa 116 ||||||||||||||||||| Sbjct: 142555 caaggaaaacaaaaagcaa 142537
>gb|AC140345.3| Mus musculus BAC clone RP24-66E22 from 13, complete sequence Length = 238541 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 gtacaaggaaaacaaaaag 113 ||||||||||||||||||| Sbjct: 233126 gtacaaggaaaacaaaaag 233144
>gb|AC140942.1| Gallus gallus BAC clone TAM32-50C11 from chromosome ul, complete sequence Length = 140346 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 tacaaggaaaacaaaaagc 114 ||||||||||||||||||| Sbjct: 100064 tacaaggaaaacaaaaagc 100046
>gb|AC147718.1| Gallus gallus BAC clone CH261-18A20 from chromosome unknown, complete sequence Length = 185989 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 96 tacaaggaaaacaaaaagc 114 ||||||||||||||||||| Sbjct: 182531 tacaaggaaaacaaaaagc 182549
>gb|AC138617.4| Mus musculus BAC clone RP23-403G9 from 8, complete sequence Length = 204919 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 aaaacaaaaagcaatcacg 121 ||||||||||||||||||| Sbjct: 129875 aaaacaaaaagcaatcacg 129893
>emb|AL713920.14| Mouse DNA sequence from clone RP23-330B20 on chromosome X, complete sequence Length = 156186 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 caaggaaaacaaaaagcaa 116 ||||||||||||||||||| Sbjct: 123012 caaggaaaacaaaaagcaa 122994 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,416,337 Number of Sequences: 3902068 Number of extensions: 1416337 Number of successful extensions: 109284 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109139 Number of HSP's gapped (non-prelim): 145 length of query: 139 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 118 effective length of database: 17,151,101,840 effective search space: 2023830017120 effective search space used: 2023830017120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)