>emb|X89023.1|HVLHCIITI H.vulgare mRNA for LHC II type I protein
          Length = 934

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Minus

                                            
Query: 36  taatttacatcattggtagtacaaatcaaacca 68
           |||| |||||||| |||||||||||||||||||
Sbjct: 891 taatctacatcat-ggtagtacaaatcaaacca 860

>ref|XM_476013.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1314

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gtgccttacttgccgggcac 118
           ||||||||||||||||||||
Sbjct: 121 gtgccttacttgccgggcac 140

>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022J22,
              complete sequence
          Length = 142854

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     gtgccttacttgccgggcac 118
              ||||||||||||||||||||
Sbjct: 118948 gtgccttacttgccgggcac 118967

>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    gtgccttacttgccgggcac 118
             ||||||||||||||||||||
Sbjct: 14146 gtgccttacttgccgggcac 14165

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 99       gtgccttacttgccgggcac 118
                ||||||||||||||||||||
Sbjct: 29235489 gtgccttacttgccgggcac 29235508



 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 3        atgaatcgaacaatgcatttgca 25
                |||||| ||||||||||||||||
Sbjct: 11624772 atgaattgaacaatgcatttgca 11624794

>dbj|AK120015.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-B06, full
           insert sequence
          Length = 1492

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gtgccttacttgccgggcac 118
           ||||||||||||||||||||
Sbjct: 153 gtgccttacttgccgggcac 172

>gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosome 3, complete sequence
          Length = 185822

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    cttgtaatttacatcattg 50
             |||||||||||||||||||
Sbjct: 39740 cttgtaatttacatcattg 39722

>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12,
             complete sequence
          Length = 139627

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 3     atgaatcgaacaatgcatttgca 25
             |||||| ||||||||||||||||
Sbjct: 69207 atgaattgaacaatgcatttgca 69229

>gb|AC107667.12| Mus musculus chromosome 3, clone RP23-187C2, complete sequence
          Length = 229632

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 32     cttgtaatttacatcattg 50
              |||||||||||||||||||
Sbjct: 168912 cttgtaatttacatcattg 168894

>gb|AC023748.4| Drosophila melanogaster X BAC RP98-36F8 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 156096

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     aatcgaacaatgcatttgc 24
             |||||||||||||||||||
Sbjct: 59493 aatcgaacaatgcatttgc 59511

>gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, complete sequence
          Length = 159629

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    tagtacaaatcaaaccatc 70
             |||||||||||||||||||
Sbjct: 27844 tagtacaaatcaaaccatc 27862

>gb|AC011737.10| Homo sapiens BAC clone RP11-33N4 from 2, complete sequence
          Length = 176709

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     tacatcattggtagtacaa 59
              |||||||||||||||||||
Sbjct: 161378 tacatcattggtagtacaa 161396

>gb|AC023724.5| Drosophila melanogaster X BAC RP98-14B2 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181974

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     aatcgaacaatgcatttgc 24
             |||||||||||||||||||
Sbjct: 27428 aatcgaacaatgcatttgc 27446

>gb|AC093142.2| Homo sapiens chromosome 3 clone RP11-301D8, complete sequence
          Length = 210592

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     tagtacaaatcaaaccatc 70
              |||||||||||||||||||
Sbjct: 182172 tagtacaaatcaaaccatc 182190

>emb|Z62199.1|HS65B5F H.sapiens CpG island DNA genomic Mse1 fragment, clone 65b5,
          forward read cpg65b5.ft1a
          Length = 260

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 52 tagtacaaatcaaaccatc 70
          |||||||||||||||||||
Sbjct: 80 tagtacaaatcaaaccatc 62

>gb|AE003445.2| Drosophila melanogaster chromosome X, section 29 of 74 of the complete
              sequence
          Length = 334222

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      aatcgaacaatgcatttgc 24
              |||||||||||||||||||
Sbjct: 126895 aatcgaacaatgcatttgc 126877

>gb|AF045531.1|AF045531 Homo sapiens germline chromosome 22, 22q11.2 region
          Length = 2171

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 12   acaatgcatttgcacggat 30
            |||||||||||||||||||
Sbjct: 1547 acaatgcatttgcacggat 1529

>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22
          Length = 909203

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     acaatgcatttgcacggat 30
              |||||||||||||||||||
Sbjct: 112754 acaatgcatttgcacggat 112736

>dbj|D88269.2| Homo sapiens immunoglobulin lambda gene locus DNA, clone:33B6
          Length = 46604

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    acaatgcatttgcacggat 30
             |||||||||||||||||||
Sbjct: 25070 acaatgcatttgcacggat 25052

>dbj|D87005.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:33B6
             downstream contig
          Length = 31989

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    acaatgcatttgcacggat 30
             |||||||||||||||||||
Sbjct: 10455 acaatgcatttgcacggat 10437


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 731,271
Number of Sequences: 3902068
Number of extensions: 731271
Number of successful extensions: 45443
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45365
Number of HSP's gapped (non-prelim): 78
length of query: 118
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 97
effective length of database: 17,151,101,840
effective search space: 1663656878480
effective search space used: 1663656878480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)