ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y15962.1|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1 456 e-125
2emb|AJ291451.1|HVU291451 Hordeum vulgare mRNA for adenosine diph... 184 1e-43
3emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine di... 176 3e-41
4ref|XM_482788.1| Oryza sativa (japonica cultivar-group), mRNA 137 2e-29
5ref|XM_507258.1| PREDICTED Oryza sativa (japonica cultivar-group... 137 2e-29
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
7dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
8dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
9dbj|AK104729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 2e-29
10dbj|AK065284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 2e-29
11gb|AF051156.1|AF051156 Oryza sativa germin-like protein (GLP110)... 137 2e-29
12gb|AF032975.1|AF032975 Oryza sativa germin-like protein 5 (GER5)... 137 2e-29
13dbj|AB015593.1| Oryza sativa OsGLP1 gene for germin-like protein... 137 2e-29
14dbj|AB010876.1| Oryza sativa OsGLP1 mRNA for germin-like protein... 137 2e-29
15gb|AY394010.1| Zea mays germin-like protein (glp1) gene, promote... 127 2e-26
16gb|AY112552.1| Zea mays CL11523_1 mRNA sequence 78 2e-11
17gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, com... 46 0.062
18gb|AC137000.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.25
19gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete se... 44 0.25
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
21dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.25
22gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome... 44 0.25
23gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete se... 42 0.97
24gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, comple... 42 0.97
25gb|AY299121.1| Xanthomonas oryzae bacteriophage Xp10 genomic DNA... 42 0.97
26emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 42 0.97
27gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, comp... 40 3.8
28gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 3.8
29gb|AC146316.3| Microcebus murinus clone CH257-437M14, complete s... 40 3.8
30gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, comp... 40 3.8
31ref|XM_598627.2| PREDICTED: Bos taurus similar to CG6454-PB, iso... 40 3.8
32gb|AC087514.2| Felis catus clone RP86-439N5, complete sequence 40 3.8
33gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 3.8
34gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, compl... 40 3.8
35gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome... 40 3.8
36gb|AC100120.9| Mus musculus chromosome 10, clone RP23-40I1, comp... 40 3.8
37gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, com... 40 3.8
38emb|BX322613.6| Human DNA sequence from clone RP11-745D9 on chro... 40 3.8
39emb|AL590225.4| Human DNA sequence from clone RP11-358H7 on chro... 40 3.8
40emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chrom... 40 3.8
41emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C1... 40 3.8
42gb|AC161185.5| Mus musculus chromosome 5, clone RP23-297D16, com... 40 3.8
43emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 3.8
44gb|AC158753.8| Mus musculus chromosome 5, clone RP23-301E24, com... 40 3.8
45gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Can... 40 3.8
46gb|AC092721.2| Homo sapiens chromosome 16 clone RP11-514P19, com... 40 3.8
47gb|AC140831.3| Homo sapiens chromosome 16 clone RP11-907K12, com... 40 3.8
48gb|AC092374.4| Homo sapiens chromosome 16 clone RP11-637I8, comp... 40 3.8
49gb|AC026131.4| Homo sapiens chromosome 11, clone RP11-458M15, co... 40 3.8
50dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 3.8
51gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete... 40 3.8
52gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 3.8
53gb|DP000022.1| Microcebus murinus target 1 genomic scaffold 40 3.8 
>emb|Y15962.1|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1
          Length = 833

 Score =  456 bits (230), Expect = e-125
 Identities = 240/242 (99%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 54  ttgacaatcatcaaatgaaattgatatgaaaaattaaacacaacttgaaa-cagactcgg 112
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 814 ttgacaatcatcaaatgaaattgatatgaaaaattaaacacaacttgaaatcagactcgg 755

                                                                       
Query: 113 agttgacctcacaagcgcacgaacacatgcatcaaattaaaccgacacgctgacaccacg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 agttgacctcacaagcgcacgaacacatgcatcaaattaaaccgacacgctgacaccacg 695

                                                                       
Query: 173 acgacctttgctgagaactgcttaattagccgctgccgccgagcacggacttgagcttct 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acgacctttgctgagaactgcttaattagccgctgccgccgagcacggacttgagcttct 635

                                                                       
Query: 233 tcacctgcgcgtcgtccaagaaggtgaccttctcaaccacggcggatggcaggttgttgg 292
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 634 tcacctgcgcgtcgtccaagaaggtgaccttctcaacgacggcggatggcaggttgttgg 575

             
Query: 293 cg 294
           ||
Sbjct: 574 cg 573
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>emb|AJ291451.1|HVU291451 Hordeum vulgare mRNA for adenosine diphosphate glucose
           pyrophosphatase (sagppase gene)
          Length = 639

 Score =  184 bits (93), Expect = 1e-43
 Identities = 96/97 (98%)
 Strand = Plus / Minus

                                                                       
Query: 198 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggt 580

                                                
Query: 258 gaccttctcaaccacggcggatggcaggttgttggcg 294
           |||||||||||| ||||||||||||||||||||||||
Sbjct: 579 gaccttctcaacgacggcggatggcaggttgttggcg 543
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>emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine diphosphate glucose
           pyrophosphatase
          Length = 642

 Score =  176 bits (89), Expect = 3e-41
 Identities = 95/97 (97%)
 Strand = Plus / Minus

                                                                       
Query: 198 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggt 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttagccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggt 583

                                                
Query: 258 gaccttctcaaccacggcggatggcaggttgttggcg 294
           |||||||||||| |||||||| |||||||||||||||
Sbjct: 582 gaccttctcaacgacggcggacggcaggttgttggcg 546
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>ref|XM_482788.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 938

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Minus

                                                                       
Query: 202 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 680

                                            
Query: 262 ttctcaaccacggcggatggcaggttgttggcg 294
           ||||| || | |||||| |||||||||||||||
Sbjct: 679 ttctcgacgatggcggacggcaggttgttggcg 647
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>ref|XM_507258.1| PREDICTED Oryza sativa (japonica cultivar-group), P0493A04.40 mRNA
          Length = 994

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Minus

                                                                       
Query: 202 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 669

                                            
Query: 262 ttctcaaccacggcggatggcaggttgttggcg 294
           ||||| || | |||||| |||||||||||||||
Sbjct: 668 ttctcgacgatggcggacggcaggttgttggcg 636
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Plus

                                                                            
Query: 202      ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
                ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22551065 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 22551124

                                                 
Query: 262      ttctcaaccacggcggatggcaggttgttggcg 294
                ||||| || | |||||| |||||||||||||||
Sbjct: 22551125 ttctcgacgatggcggacggcaggttgttggcg 22551157
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>dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0690E03
          Length = 139924

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Plus

                                                                         
Query: 202   ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
             ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24566 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 24625

                                              
Query: 262   ttctcaaccacggcggatggcaggttgttggcg 294
             ||||| || | |||||| |||||||||||||||
Sbjct: 24626 ttctcgacgatggcggacggcaggttgttggcg 24658
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>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0493A04
          Length = 149367

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Plus

                                                                          
Query: 202    ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
              ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145993 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 146052

                                               
Query: 262    ttctcaaccacggcggatggcaggttgttggcg 294
              ||||| || | |||||| |||||||||||||||
Sbjct: 146053 ttctcgacgatggcggacggcaggttgttggcg 146085
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>dbj|AK104729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C02, full
           insert sequence
          Length = 938

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Minus

                                                                       
Query: 202 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 680

                                            
Query: 262 ttctcaaccacggcggatggcaggttgttggcg 294
           ||||| || | |||||| |||||||||||||||
Sbjct: 679 ttctcgacgatggcggacggcaggttgttggcg 647
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>dbj|AK065284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M08, full
           insert sequence
          Length = 994

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Minus

                                                                       
Query: 202 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 669

                                            
Query: 262 ttctcaaccacggcggatggcaggttgttggcg 294
           ||||| || | |||||| |||||||||||||||
Sbjct: 668 ttctcgacgatggcggacggcaggttgttggcg 636
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>gb|AF051156.1|AF051156 Oryza sativa germin-like protein (GLP110) mRNA, complete cds
          Length = 1004

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Minus

                                                                       
Query: 202 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 661

                                            
Query: 262 ttctcaaccacggcggatggcaggttgttggcg 294
           ||||| || | |||||| |||||||||||||||
Sbjct: 660 ttctcgacgatggcggacggcaggttgttggcg 628
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>gb|AF032975.1|AF032975 Oryza sativa germin-like protein 5 (GER5) mRNA, complete cds
          Length = 1030

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Minus

                                                                       
Query: 202 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 682

                                            
Query: 262 ttctcaaccacggcggatggcaggttgttggcg 294
           ||||| || | |||||| |||||||||||||||
Sbjct: 681 ttctcgacgatggcggacggcaggttgttggcg 649
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>dbj|AB015593.1| Oryza sativa OsGLP1 gene for germin-like protein 1, complete cds
          Length = 642

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Minus

                                                                       
Query: 202 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 579

                                            
Query: 262 ttctcaaccacggcggatggcaggttgttggcg 294
           ||||| || | |||||| |||||||||||||||
Sbjct: 578 ttctcgacgatggcggacggcaggttgttggcg 546
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>dbj|AB010876.1| Oryza sativa OsGLP1 mRNA for germin-like protein 1, complete cds
          Length = 994

 Score =  137 bits (69), Expect = 2e-29
 Identities = 87/93 (93%)
 Strand = Plus / Minus

                                                                       
Query: 202 ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccgctaccgccgaggacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 681

                                            
Query: 262 ttctcaaccacggcggatggcaggttgttggcg 294
           ||||| || | |||||| |||||||||||||||
Sbjct: 680 ttctcgacgatggcggacggcaggttgttggcg 648
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>gb|AY394010.1| Zea mays germin-like protein (glp1) gene, promoter region and
            complete cds
          Length = 2490

 Score =  127 bits (64), Expect = 2e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                        
Query: 202  ccgctgccgccgagcacggacttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 261
            |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ccgctgccgccgagcacactcttgagcttcttcacctgcgcgtcgtccaagaaggtgacc 2030

                                            
Query: 262  ttctcaaccacggcggatggcaggttgttggc 293
            ||||| || |||||||| || |||||||||||
Sbjct: 2029 ttctccacgacggcggacgggaggttgttggc 1998
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>gb|AY112552.1| Zea mays CL11523_1 mRNA sequence
          Length = 544

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                  
Query: 239 gcgcgtcgtccaagaaggtgaccttctcaaccacggcggatggcaggttgttggc 293
           |||||||||||||||||||||||||||| || |||||||| || |||||||||||
Sbjct: 366 gcgcgtcgtccaagaaggtgaccttctccacgacggcggacgggaggttgttggc 420
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>gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, complete sequence
          Length = 162877

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 65     caaatgaaattgatatgaaaaat 87
              |||||||||||||||||||||||
Sbjct: 144794 caaatgaaattgatatgaaaaat 144816
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>gb|AC137000.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0035I01, complete sequence
          Length = 147813

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 70   gaaattgatatgaaaaattaaa 91
            ||||||||||||||||||||||
Sbjct: 3137 gaaattgatatgaaaaattaaa 3158
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>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence
          Length = 158384

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 70    gaaattgatatgaaaaattaaa 91
             ||||||||||||||||||||||
Sbjct: 58531 gaaattgatatgaaaaattaaa 58552
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 70       gaaattgatatgaaaaattaaa 91
                ||||||||||||||||||||||
Sbjct: 29518635 gaaattgatatgaaaaattaaa 29518656
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 203     cgctgccgccgagcacggacttgagc 228
               |||||||||||||||||| |||||||
Sbjct: 7136995 cgctgccgccgagcacggccttgagc 7137020
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>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0086G17,
              complete sequence
          Length = 134631

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 70     gaaattgatatgaaaaattaaa 91
              ||||||||||||||||||||||
Sbjct: 102905 gaaattgatatgaaaaattaaa 102926
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>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     cacgtgtgggcgttatcattt 37
              |||||||||||||||||||||
Sbjct: 104360 cacgtgtgggcgttatcattt 104380
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>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence
          Length = 142018

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    cacgtgtgggcgttatcattt 37
             |||||||||||||||||||||
Sbjct: 73257 cacgtgtgggcgttatcattt 73277
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>gb|AY299121.1| Xanthomonas oryzae bacteriophage Xp10 genomic DNA, complete genome
          Length = 44373

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   agcttcttcacctgcgcgtcg 246
             |||||||||||||||||||||
Sbjct: 10658 agcttcttcacctgcgcgtcg 10638
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 225    gagcttcttcacctgcgcgtcgtcc 249
              |||||||||||||| ||||||||||
Sbjct: 305483 gagcttcttcaccttcgcgtcgtcc 305507
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>gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, complete sequence
          Length = 181468

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    gaaattgatatgaaaaatta 89
             ||||||||||||||||||||
Sbjct: 13285 gaaattgatatgaaaaatta 13266
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 228     cttcttcacctgcgcgtcgt 247
               ||||||||||||||||||||
Sbjct: 2254715 cttcttcacctgcgcgtcgt 2254734
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>gb|AC146316.3| Microcebus murinus clone CH257-437M14, complete sequence
          Length = 274705

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    ttgatatgaaaaattaaaca 93
             ||||||||||||||||||||
Sbjct: 59774 ttgatatgaaaaattaaaca 59793
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>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 62    catcaaatgaaattgatatgaaaa 85
             |||||| |||||||||||||||||
Sbjct: 57747 catcaattgaaattgatatgaaaa 57770
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>ref|XM_598627.2| PREDICTED: Bos taurus similar to CG6454-PB, isoform B (LOC520387),
            mRNA
          Length = 3625

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 81   gaaaaattaaacacaacttgaaac 104
            |||||||||||||||| |||||||
Sbjct: 3157 gaaaaattaaacacaaattgaaac 3134
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>gb|AC087514.2| Felis catus clone RP86-439N5, complete sequence
          Length = 151974

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    aatcatcaaatgaaattgat 78
             ||||||||||||||||||||
Sbjct: 60358 aatcatcaaatgaaattgat 60377
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     gccgctgccgccgagcacgg 220
               ||||||||||||||||||||
Sbjct: 2457731 gccgctgccgccgagcacgg 2457712
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>gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, complete sequence
          Length = 261450

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 69     tgaaattgatatgaaaaattaaacacaa 96
              ||||| |||| |||||||||||||||||
Sbjct: 232770 tgaaagtgatctgaaaaattaaacacaa 232743
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>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence
          Length = 245623

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 80     tgaaaaattaaacacaacttgaaa 103
              ||||||||||||||||| ||||||
Sbjct: 225998 tgaaaaattaaacacaaattgaaa 226021
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>gb|AC100120.9| Mus musculus chromosome 10, clone RP23-40I1, complete sequence
          Length = 236895

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    gaaattgatatgaaaaatta 89
             ||||||||||||||||||||
Sbjct: 38058 gaaattgatatgaaaaatta 38077
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>gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, complete sequence
          Length = 198281

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     aatgaaattgatatgaaaaa 86
              ||||||||||||||||||||
Sbjct: 195204 aatgaaattgatatgaaaaa 195185
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>emb|BX322613.6| Human DNA sequence from clone RP11-745D9 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 191752

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    aatcatcaaatgaaattgat 78
             ||||||||||||||||||||
Sbjct: 40708 aatcatcaaatgaaattgat 40727
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>emb|AL590225.4| Human DNA sequence from clone RP11-358H7 on chromosome 6 Contains
            part of the gene for a novel protein highly similar to
            FLJ30899, complete sequence
          Length = 65114

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   aattgatatgaaaaattaaa 91
            ||||||||||||||||||||
Sbjct: 1289 aattgatatgaaaaattaaa 1270
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>emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chromosome 6, complete
             sequence
          Length = 81780

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    tgaaaaattaaacacaactt 99
             ||||||||||||||||||||
Sbjct: 54905 tgaaaaattaaacacaactt 54886
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>emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C10 on chromosome 10 Contains
           a poly(A) binding protein, cytoplasmic 1 (PABPC1)
           pseudogene, an Ig kappa chain precursor V region
           pseudogene, a pseudogene similar to part of kinase
           suppressor of ras (KSR) and four CpG islands, complete
           sequence
          Length = 197700

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  aatcatcaaatgaaattgat 78
           ||||||||||||||||||||
Sbjct: 760 aatcatcaaatgaaattgat 779
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>gb|AC161185.5| Mus musculus chromosome 5, clone RP23-297D16, complete sequence
          Length = 206099

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   catcaaatgaaattgatatgaaaa 85
            |||||| |||||||||||||||||
Sbjct: 2381 catcaattgaaattgatatgaaaa 2358
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     aaattgatatgaaaaattaa 90
              ||||||||||||||||||||
Sbjct: 281659 aaattgatatgaaaaattaa 281678
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>gb|AC158753.8| Mus musculus chromosome 5, clone RP23-301E24, complete sequence
          Length = 190368

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    aatgaaattgatatgaaaaa 86
             ||||||||||||||||||||
Sbjct: 32566 aatgaaattgatatgaaaaa 32547
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>gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155413

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    tgaaaaattaaacacaactt 99
             ||||||||||||||||||||
Sbjct: 18496 tgaaaaattaaacacaactt 18477
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>gb|AC092721.2| Homo sapiens chromosome 16 clone RP11-514P19, complete sequence
          Length = 201382

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 69     tgaaattgatatgaaaaattaaacacaa 96
              ||||| |||| |||||||||||||||||
Sbjct: 194536 tgaaagtgatctgaaaaattaaacacaa 194509
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>gb|AC140831.3| Homo sapiens chromosome 16 clone RP11-907K12, complete sequence
          Length = 96984

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 69    tgaaattgatatgaaaaattaaacacaa 96
             ||||| |||| |||||||||||||||||
Sbjct: 28681 tgaaagtgatctgaaaaattaaacacaa 28708
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>gb|AC092374.4| Homo sapiens chromosome 16 clone RP11-637I8, complete sequence
          Length = 150962

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 69    tgaaattgatatgaaaaattaaacacaa 96
             ||||| |||| |||||||||||||||||
Sbjct: 92388 tgaaagtgatctgaaaaattaaacacaa 92361
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>gb|AC026131.4| Homo sapiens chromosome 11, clone RP11-458M15, complete sequence
          Length = 174688

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     aatcatcaaatgaaattgat 78
              ||||||||||||||||||||
Sbjct: 102969 aatcatcaaatgaaattgat 102950
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     aaattgatatgaaaaattaa 90
              ||||||||||||||||||||
Sbjct: 282959 aaattgatatgaaaaattaa 282978
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>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence
          Length = 177471

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     tgaaaaattaaacacaactt 99
              ||||||||||||||||||||
Sbjct: 126735 tgaaaaattaaacacaactt 126754
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 228     cttcttcacctgcgcgtcgt 247
               ||||||||||||||||||||
Sbjct: 2421518 cttcttcacctgcgcgtcgt 2421499
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>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     ttgatatgaaaaattaaaca 93
              ||||||||||||||||||||
Sbjct: 631265 ttgatatgaaaaattaaaca 631284


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,739,980
Number of Sequences: 3902068
Number of extensions: 2739980
Number of successful extensions: 54877
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54576
Number of HSP's gapped (non-prelim): 300
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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