| Clone Name | rbaet56d09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide oxidoreductase (PCR) Length = 1490 Score = 266 bits (134), Expect = 2e-68 Identities = 137/138 (99%) Strand = Plus / Minus Query: 3 catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1488 catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 1429 Query: 63 cacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1428 cacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctt 1369 Query: 123 ctaaaagggcgtaaacat 140 |||||| ||||||||||| Sbjct: 1368 ctaaaaaggcgtaaacat 1351
>emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlorophyilide reductase Length = 1484 Score = 176 bits (89), Expect = 1e-41 Identities = 126/137 (91%), Gaps = 1/137 (0%) Strand = Plus / Minus Query: 1 gccatcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatct 60 ||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||| Sbjct: 1474 gccatcctcaatcagacctgcggttttattattc-atggttcgccgaaaattgtacatct 1416 Query: 61 tccacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagc 120 ||||||||||||||| |||||||||| | |||||||||||||||||| ||||||||||| Sbjct: 1415 tccacacgagatctacgcactctcgccgacactcgcaaggcctctcccgcgtaattgagt 1356 Query: 121 ttctaaaagggcgtaaa 137 |||||||| |||||||| Sbjct: 1355 ttctaaaaaggcgtaaa 1339
>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase Length = 1146 Score = 131 bits (66), Expect = 6e-28 Identities = 98/106 (92%), Gaps = 2/106 (1%) Strand = Plus / Minus Query: 3 catcctcaatcaggcctgcggttttattattccaatgttt-gccgaaaattgtacatctt 61 |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 1146 catcctcaattaggcctgcggttttattattccaatggttcgccgaaaattgtacatctt 1087 Query: 62 ccacacgagatctatgcactctcgcggccactcgc-aaggcctctc 106 |||| ||||||||||| |||| ||||| ||||||| |||||||||| Sbjct: 1086 ccacccgagatctatgtactcccgcggacactcgcaaaggcctctc 1041
>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete sequence Length = 181811 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 aaattgtacatcttccacac 67 |||||||||||||||||||| Sbjct: 24311 aaattgtacatcttccacac 24292
>gb|AC005007.1|AC005007 Homo sapiens BAC clone GS1-51M12 from 7p21-p22, complete sequence Length = 136862 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cttctaaaagggcgtaaaca 139 |||||||||||||||||||| Sbjct: 91490 cttctaaaagggcgtaaaca 91471
>emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, complete sequence Length = 176196 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ttttattattccaatgtttg 43 |||||||||||||||||||| Sbjct: 105180 ttttattattccaatgtttg 105199
>ref|XM_968605.1| PREDICTED: Tribolium castaneum similar to Cytochrome P450 4c3 (CYPIVC3) (LOC662514), mRNA Length = 1488 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 29 ttattccaatgtttgccgaaaat 51 ||||||| ||||||||||||||| Sbjct: 476 ttattcccatgtttgccgaaaat 454
>emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in linkage group 20, complete sequence Length = 139851 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ttttattattccaatgttt 42 ||||||||||||||||||| Sbjct: 92684 ttttattattccaatgttt 92702 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 868,764 Number of Sequences: 3902068 Number of extensions: 868764 Number of successful extensions: 57208 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57196 Number of HSP's gapped (non-prelim): 10 length of query: 140 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 119 effective length of database: 17,151,101,840 effective search space: 2040981118960 effective search space used: 2040981118960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)