ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 280 1e-72
2gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047... 42 0.46
3emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chr... 40 1.8
4emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in ... 40 1.8
5gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence 38 7.2
6emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete ... 38 7.2
7emb|BX640436.1| Bordetella parapertussis strain 12822, complete ... 38 7.2
8emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 38 7.2
9emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 17... 38 7.2
10gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Canc... 38 7.2
11gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell P... 38 7.2
12gb|AC114402.2| Homo sapiens chromosome 1 clone RP11-397P13, comp... 38 7.2
13ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript ... 38 7.2
14gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA 38 7.2
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
16dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
17gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 o... 38 7.2
18emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chrom... 38 7.2

>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA)
          Length = 1174

 Score =  280 bits (141), Expect = 1e-72
 Identities = 147/149 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    aagaccagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaaca 60
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 aagaacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaaca 1095

                                                                        
Query: 61   gaagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gaagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcat 1035

                                         
Query: 121  acagtacaatacagacgcccccattttcc 149
            |||||||||||||||||||||||| ||||
Sbjct: 1034 acagtacaatacagacgcccccatcttcc 1006



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>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds
          Length = 1785

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 104  tggtccttatttatcatacag 124
            |||||||||||||||||||||
Sbjct: 1462 tggtccttatttatcatacag 1442



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>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains
            part of a novel gene (FLJ30499) and the 3' end of a novel
            gene (FLJ30450), complete sequence
          Length = 41069

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 99   ctcactggtccttatttatc 118
            ||||||||||||||||||||
Sbjct: 3262 ctcactggtccttatttatc 3243



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>emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in linkage group 11,
             complete sequence
          Length = 111222

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tatttatcatacagtacaat 130
             ||||||||||||||||||||
Sbjct: 36635 tatttatcatacagtacaat 36616



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>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence
          Length = 283075

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     caaggagcaaacagaagaa 66
              |||||||||||||||||||
Sbjct: 148411 caaggagcaaacagaagaa 148429



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>emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete genome; segment 16/16
          Length = 123385

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     ccagaacgagatgagacat 23
             |||||||||||||||||||
Sbjct: 26783 ccagaacgagatgagacat 26765



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>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      ccagaacgagatgagacat 23
              |||||||||||||||||||
Sbjct: 162581 ccagaacgagatgagacat 162563



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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      ccagaacgagatgagacat 23
              |||||||||||||||||||
Sbjct: 120077 ccagaacgagatgagacat 120095



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>emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 171D11
          Length = 35000

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 66   atctaccacccgctccatt 84
            |||||||||||||||||||
Sbjct: 4764 atctaccacccgctccatt 4746



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>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206282

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 107    tccttatttatcatacagt 125
              |||||||||||||||||||
Sbjct: 109322 tccttatttatcatacagt 109304



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>gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170186

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 66    atctaccacccgctccatt 84
             |||||||||||||||||||
Sbjct: 80976 atctaccacccgctccatt 80958



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>gb|AC114402.2| Homo sapiens chromosome 1 clone RP11-397P13, complete sequence
          Length = 179308

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 49    aaggagcaaacagaagaat 67
             |||||||||||||||||||
Sbjct: 28479 aaggagcaaacagaagaat 28461



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>ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript variant A (CG18166),
           mRNA
          Length = 1822

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 66  atctaccacccgctccatt 84
           |||||||||||||||||||
Sbjct: 160 atctaccacccgctccatt 178



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>gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA
          Length = 1849

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 66  atctaccacccgctccatt 84
           |||||||||||||||||||
Sbjct: 160 atctaccacccgctccatt 178



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 118      catacagtacaatacagac 136
                |||||||||||||||||||
Sbjct: 22459477 catacagtacaatacagac 22459495



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>dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016D04
          Length = 147313

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 118   catacagtacaatacagac 136
             |||||||||||||||||||
Sbjct: 29833 catacagtacaatacagac 29851



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>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete
              sequence
          Length = 387740

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 66     atctaccacccgctccatt 84
              |||||||||||||||||||
Sbjct: 338459 atctaccacccgctccatt 338441



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>emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chromosome 2, complete
              sequence
          Length = 144844

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     caaggagcaaacagaagaa 66
              |||||||||||||||||||
Sbjct: 123793 caaggagcaaacagaagaa 123775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,250,751
Number of Sequences: 3902068
Number of extensions: 1250751
Number of successful extensions: 75051
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75001
Number of HSP's gapped (non-prelim): 50
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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