| Clone Name | rbaet56d08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 280 bits (141), Expect = 1e-72 Identities = 147/149 (98%) Strand = Plus / Minus Query: 1 aagaccagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaaca 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 aagaacagaacgagatgagacatatattacacacgatctgaacgtgacaaggagcaaaca 1095 Query: 61 gaagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 gaagaatctaccacccgctccatttcacattatcccccctcactggtccttatttatcat 1035 Query: 121 acagtacaatacagacgcccccattttcc 149 |||||||||||||||||||||||| |||| Sbjct: 1034 acagtacaatacagacgcccccatcttcc 1006
>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds Length = 1785 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tggtccttatttatcatacag 124 ||||||||||||||||||||| Sbjct: 1462 tggtccttatttatcatacag 1442
>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains part of a novel gene (FLJ30499) and the 3' end of a novel gene (FLJ30450), complete sequence Length = 41069 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ctcactggtccttatttatc 118 |||||||||||||||||||| Sbjct: 3262 ctcactggtccttatttatc 3243
>emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in linkage group 11, complete sequence Length = 111222 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 tatttatcatacagtacaat 130 |||||||||||||||||||| Sbjct: 36635 tatttatcatacagtacaat 36616
>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence Length = 283075 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 caaggagcaaacagaagaa 66 ||||||||||||||||||| Sbjct: 148411 caaggagcaaacagaagaa 148429
>emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete genome; segment 16/16 Length = 123385 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ccagaacgagatgagacat 23 ||||||||||||||||||| Sbjct: 26783 ccagaacgagatgagacat 26765
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ccagaacgagatgagacat 23 ||||||||||||||||||| Sbjct: 162581 ccagaacgagatgagacat 162563
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 ccagaacgagatgagacat 23 ||||||||||||||||||| Sbjct: 120077 ccagaacgagatgagacat 120095
>emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 171D11 Length = 35000 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 atctaccacccgctccatt 84 ||||||||||||||||||| Sbjct: 4764 atctaccacccgctccatt 4746
>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206282 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 tccttatttatcatacagt 125 ||||||||||||||||||| Sbjct: 109322 tccttatttatcatacagt 109304
>gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170186 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 atctaccacccgctccatt 84 ||||||||||||||||||| Sbjct: 80976 atctaccacccgctccatt 80958
>gb|AC114402.2| Homo sapiens chromosome 1 clone RP11-397P13, complete sequence Length = 179308 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 aaggagcaaacagaagaat 67 ||||||||||||||||||| Sbjct: 28479 aaggagcaaacagaagaat 28461
>ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript variant A (CG18166), mRNA Length = 1822 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 atctaccacccgctccatt 84 ||||||||||||||||||| Sbjct: 160 atctaccacccgctccatt 178
>gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA Length = 1849 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 atctaccacccgctccatt 84 ||||||||||||||||||| Sbjct: 160 atctaccacccgctccatt 178
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 catacagtacaatacagac 136 ||||||||||||||||||| Sbjct: 22459477 catacagtacaatacagac 22459495
>dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016D04 Length = 147313 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 catacagtacaatacagac 136 ||||||||||||||||||| Sbjct: 29833 catacagtacaatacagac 29851
>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete sequence Length = 387740 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 atctaccacccgctccatt 84 ||||||||||||||||||| Sbjct: 338459 atctaccacccgctccatt 338441
>emb|AL845417.3| Mouse DNA sequence from clone RP23-20I9 on chromosome 2, complete sequence Length = 144844 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 caaggagcaaacagaagaa 66 ||||||||||||||||||| Sbjct: 123793 caaggagcaaacagaagaa 123775 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,250,751 Number of Sequences: 3902068 Number of extensions: 1250751 Number of successful extensions: 75051 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75001 Number of HSP's gapped (non-prelim): 50 length of query: 149 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 128 effective length of database: 17,151,101,840 effective search space: 2195341035520 effective search space used: 2195341035520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)