ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 0.73
2dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic D... 38 0.73
3gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 38 0.73
4ref|XM_675503.1| Aspergillus nidulans FGSC A4 hypothetical prote... 36 2.9
5gb|AC125396.4| Mus musculus BAC clone RP24-69M4 from chromosome ... 36 2.9
6gb|AC154540.2| Mus musculus BAC clone RP23-452G1 from chromosome... 36 2.9

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 6        aacgggacgggacggacaa 24
                |||||||||||||||||||
Sbjct: 23921038 aacgggacgggacggacaa 23921020



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>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0005G07
          Length = 142850

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     aacgggacgggacggacaa 24
             |||||||||||||||||||
Sbjct: 75965 aacgggacgggacggacaa 75947



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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 38.2 bits (19), Expect = 0.73
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 2       gaaaaacgggacgggacgg 20
               |||||||||||||||||||
Sbjct: 1314457 gaaaaacgggacgggacgg 1314439



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>ref|XM_675503.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7326.2), mRNA
          Length = 1500

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   agaaaaacgggacgggac 18
           ||||||||||||||||||
Sbjct: 959 agaaaaacgggacgggac 942



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>gb|AC125396.4| Mus musculus BAC clone RP24-69M4 from chromosome 16, complete sequence
          Length = 179186

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     aaaaacgggacgggacgg 20
             ||||||||||||||||||
Sbjct: 14489 aaaaacgggacgggacgg 14506



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>gb|AC154540.2| Mus musculus BAC clone RP23-452G1 from chromosome 16, complete sequence
          Length = 171663

 Score = 36.2 bits (18), Expect = 2.9
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 3      aaaaacgggacgggacgg 20
              ||||||||||||||||||
Sbjct: 155704 aaaaacgggacgggacgg 155721


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,423
Number of Sequences: 3902068
Number of extensions: 60423
Number of successful extensions: 16348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16316
Number of HSP's gapped (non-prelim): 32
length of query: 33
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 13
effective length of database: 17,155,003,908
effective search space: 223015050804
effective search space used: 223015050804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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