>gb|AC138355.17| Mus musculus chromosome 8, clone RP24-281G1, complete sequence
          Length = 154808

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    tataagataaactcaaacaag 60
             |||||||||||||||||||||
Sbjct: 81142 tataagataaactcaaacaag 81122

>gb|AC163349.3| Mus musculus BAC clone RP23-188F5 from chromosome 3, complete sequence
          Length = 226848

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    tataagataaactcaaacaag 60
             |||||||||||||||||||||
Sbjct: 95396 tataagataaactcaaacaag 95416

>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 18      gaaaatgcactttttcctttc 38
               |||||||||||||||||||||
Sbjct: 1909103 gaaaatgcactttttcctttc 1909123

>gb|AC163489.5| Mus musculus chromosome 8, clone RP24-354I15, complete sequence
          Length = 157478

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    tataagataaactcaaacaag 60
             |||||||||||||||||||||
Sbjct: 87275 tataagataaactcaaacaag 87295

>gb|AC122235.5| Mus musculus BAC clone RP23-139H6 from chromosome 12, complete sequence
          Length = 190293

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    tataagataaactcaaacaag 60
             |||||||||||||||||||||
Sbjct: 40258 tataagataaactcaaacaag 40238

>gb|AC122344.3| Mus musculus BAC clone RP23-364M19 from chromosome 9, complete sequence
          Length = 209165

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 40     tataagataaactcaaacaag 60
              |||||||||||||||||||||
Sbjct: 108741 tataagataaactcaaacaag 108761

>gb|AC122192.4| Mus musculus BAC clone RP23-45B2 from 14, complete sequence
          Length = 178698

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    tataagataaactcaaacaag 60
             |||||||||||||||||||||
Sbjct: 46183 tataagataaactcaaacaag 46163

>emb|AL713914.10| Mouse DNA sequence from clone RP24-293E17 on chromosome 11 Contains the
             3' end of the Cobl gene for cordon-bleu and a novel gene,
             complete sequence
          Length = 188406

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   aggaggatagatttatttttg 193
             |||||||||||||||||||||
Sbjct: 70675 aggaggatagatttatttttg 70655

>gb|AC153538.10| Mus musculus 10 BAC RP23-136I11 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 210649

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   tataagataaactcaaacaag 60
            |||||||||||||||||||||
Sbjct: 1049 tataagataaactcaaacaag 1029

>gb|AC153539.7| Mus musculus 10 BAC RP23-245C19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 230854

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     tataagataaactcaaacaag 60
              |||||||||||||||||||||
Sbjct: 192425 tataagataaactcaaacaag 192405

>gb|AC160102.6| Mus musculus chromosome 1, clone RP23-246K5, complete sequence
          Length = 171111

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    tataagataaactcaaacaag 60
             |||||||||||||||||||||
Sbjct: 34159 tataagataaactcaaacaag 34179

>gb|AC156939.5| Mus musculus BAC clone RP23-136O24 from chromosome 12, complete sequence
          Length = 218561

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     tataagataaactcaaacaag 60
              |||||||||||||||||||||
Sbjct: 194584 tataagataaactcaaacaag 194564

>gb|AC021860.6| Homo sapiens BAC clone RP11-617D20 from 4, complete sequence
          Length = 148045

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 48     aaactcaaacaagaagatagaaaat 72
              ||||||||||||||||| |||||||
Sbjct: 121492 aaactcaaacaagaagaaagaaaat 121468

>gb|AC150893.3| Mus musculus BAC clone RP24-403H13 from chromosome 3, complete sequence
          Length = 181373

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    tataagataaactcaaacaag 60
             |||||||||||||||||||||
Sbjct: 12258 tataagataaactcaaacaag 12238

>emb|AL670231.7| Mouse DNA sequence from clone RP23-329G7 on chromosome 4, complete
              sequence
          Length = 229957

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     tataagataaactcaaacaag 60
              |||||||||||||||||||||
Sbjct: 210640 tataagataaactcaaacaag 210620

>emb|AL645824.12| Mouse DNA sequence from clone RP23-200O20 on chromosome 4, complete
              sequence
          Length = 145443

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 40     tataagataaactcaaacaag 60
              |||||||||||||||||||||
Sbjct: 142430 tataagataaactcaaacaag 142450

>gb|AC141565.3| Mus musculus BAC clone RP23-160M21 from chromosome 14, complete
             sequence
          Length = 210128

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    aagaagatagaaaatgttac 77
             ||||||||||||||||||||
Sbjct: 69203 aagaagatagaaaatgttac 69222

>gb|AC145512.33| Medicago truncatula clone mth2-19o18, complete sequence
          Length = 145524

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   aaacttaagcaccaacattt 140
             ||||||||||||||||||||
Sbjct: 39145 aaacttaagcaccaacattt 39126

>gb|AC141865.27| Medicago truncatula clone mth2-7b19, complete sequence
          Length = 117380

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   aaacttaagcaccaacattt 140
             ||||||||||||||||||||
Sbjct: 88425 aaacttaagcaccaacattt 88444

>gb|AC140067.14| Medicago truncatula clone mth2-25n14, complete sequence
          Length = 116196

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   aaacttaagcaccaacattt 140
             ||||||||||||||||||||
Sbjct: 88420 aaacttaagcaccaacattt 88439

>emb|AL445469.4| Human DNA sequence from clone RP11-254N18 on chromosome 1 Contains part
             of the ACBD6 gene for acyl-Coenzyme A binding domain
             containing 6 and a voltage-dependent anion channel 1
             (VDAC1) pseudogene, complete sequence
          Length = 129504

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   actctagactctagagaaga 252
             ||||||||||||||||||||
Sbjct: 21948 actctagactctagagaaga 21967

>gb|AC090122.26| Mus musculus strain C57BL/6J clone rp23-28a7 map 7, complete sequence
          Length = 212485

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    ctttcttataagataaactc 53
             ||||||||||||||||||||
Sbjct: 82387 ctttcttataagataaactc 82406

>emb|AL356311.6| Human DNA sequence from clone RP3-443C4 on chromosome 6 Contains the
             part of the ESR1 gene for estrogen receptor 1, a novel
             gene and a CpG island, complete sequence
          Length = 67346

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 153   tgctctaggctctagcctctagga 176
             ||||||||||| ||||||||||||
Sbjct: 17504 tgctctaggctgtagcctctagga 17481

>emb|AL354949.10| Human DNA sequence from clone RP11-82L20 on chromosome 1 Contains part
             of the NEGR1 gene for neuronal growth regulator 1 and a
             novel gene, complete sequence
          Length = 180569

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 4     ttttcttttggatggaaaatgcactttt 31
             |||||||||| ||| |||||||||||||
Sbjct: 12825 ttttcttttgtatgcaaaatgcactttt 12852

>emb|AL121977.11|HSJ492P14 Human DNA sequence from clone RP3-492P14 on chromosome 6q13-15 Contains
             a single stranded DNA binding protein pseudogene, the TPBG
             gene for trophoblast glycoprotein (5T4-AG) and a CpG
             island, complete sequence
          Length = 121909

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    tcttataagataaactcaaa 56
             ||||||||||||||||||||
Sbjct: 14005 tcttataagataaactcaaa 13986

>gb|AC090569.4| Homo sapiens chromosome 17, clone RP11-269M11, complete sequence
          Length = 169262

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 43     aagataaactcaaacaagaagata 66
              |||||||||||||| |||||||||
Sbjct: 165708 aagataaactcaaagaagaagata 165731

>gb|AC027043.7| Homo sapiens chromosome 8, clone RP11-769H18, complete sequence
          Length = 155821

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 43    aagataaactcaaacaagaagata 66
             |||||||||||||| |||||||||
Sbjct: 38968 aagataaactcaaagaagaagata 38945

>gb|AC022463.5| Homo sapiens BAC clone RP11-562N2 from 4, complete sequence
          Length = 190080

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    aatcaagaaattaaacttaa 128
              ||||||||||||||||||||
Sbjct: 128174 aatcaagaaattaaacttaa 128155

>emb|AJ330980.1|HSA330980 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-GA2RS
          Length = 688

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 109 aatcaagaaattaaacttaa 128
           ||||||||||||||||||||
Sbjct: 254 aatcaagaaattaaacttaa 235

>dbj|AP002960.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-187P2, complete
             sequence
          Length = 83000

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    aatgcactttttcctttctt 40
             ||||||||||||||||||||
Sbjct: 72583 aatgcactttttcctttctt 72602


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,924,754
Number of Sequences: 3902068
Number of extensions: 3924754
Number of successful extensions: 89083
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89007
Number of HSP's gapped (non-prelim): 76
length of query: 290
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 268
effective length of database: 17,147,199,772
effective search space: 4595449538896
effective search space used: 4595449538896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)