>emb|X63197.1|HVLHBC H.vulgare lhbC mRNA for type III LHCII CAB precursor protein
          Length = 928

 Score =  248 bits (125), Expect = 3e-63
 Identities = 131/133 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatcacatcgaccattcgttgctattgcacacacatgggaataatttacattttacaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 gatcacatcgaccattcgttgctattgcacacacatgggaataatttacattttacaatg 864

                                                                       
Query: 61  gcaggccacgttgcgcgtcgggcagcctaaaatccaggcgcaaatttgggggcgaaaacc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 863 gcaggccacgttgcgcgtcgggcagcctaagatccaggcgcaaatttggtggcgaaaacc 804

                        
Query: 121 catgcattattgg 133
           |||||||||||||
Sbjct: 803 catgcattattgg 791

>emb|AL732631.4| Mouse DNA sequence from clone RP23-345P19 on chromosome 11 no genes,
             complete sequence
          Length = 191363

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    gggaataatttacattttac 56
             ||||||||||||||||||||
Sbjct: 37126 gggaataatttacattttac 37145

>emb|AJ005695.1|ECH5695 Human parechovirus 2 complete genome
          Length = 7348

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   aatttacattttacaatggc 62
            ||||||||||||||||||||
Sbjct: 5510 aatttacattttacaatggc 5491

>gb|AC160470.3| Mus musculus chromosome 3, clone RP24-74B11, complete sequence
          Length = 204941

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    ggaataatttacattttac 56
             |||||||||||||||||||
Sbjct: 89200 ggaataatttacattttac 89182

>gb|AC122837.4| Mus musculus BAC clone RP23-189N3 from 16, complete sequence
          Length = 199988

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    tttacattttacaatggca 63
             |||||||||||||||||||
Sbjct: 76894 tttacattttacaatggca 76876

>gb|AC116471.8| Mus musculus chromosome 12, clone RP23-384N3, complete sequence
          Length = 240876

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     aataatttacattttacaa 58
              |||||||||||||||||||
Sbjct: 194323 aataatttacattttacaa 194305

>gb|AC157821.2| Mus musculus BAC clone RP24-476E8 from chromosome 12, complete sequence
          Length = 189341

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     aataatttacattttacaa 58
              |||||||||||||||||||
Sbjct: 147783 aataatttacattttacaa 147801

>emb|BX548051.11| Zebrafish DNA sequence from clone CH211-203M19 in linkage group 16,
             complete sequence
          Length = 162546

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    aataatttacattttacaa 58
             |||||||||||||||||||
Sbjct: 15047 aataatttacattttacaa 15065

>emb|CR926133.7| Zebrafish DNA sequence from clone DKEY-165C17 in linkage group 20,
             complete sequence
          Length = 38511

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    gggaataatttacatttta 55
             |||||||||||||||||||
Sbjct: 36925 gggaataatttacatttta 36907

>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177115

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    aataatttacattttacaa 58
             |||||||||||||||||||
Sbjct: 48406 aataatttacattttacaa 48388

>gb|DQ317109.1| Drosophila pseudoobscura Dscam gene, exons 3 through 24
          Length = 53864

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    cgttgctattgcacacaca 35
             |||||||||||||||||||
Sbjct: 48300 cgttgctattgcacacaca 48318

>gb|AC102340.10| Mus musculus chromosome 3, clone RP23-163J23, complete sequence
          Length = 199087

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 38     ggaataatttacattttac 56
              |||||||||||||||||||
Sbjct: 153555 ggaataatttacattttac 153573


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,181,084
Number of Sequences: 3902068
Number of extensions: 1181084
Number of successful extensions: 87529
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87508
Number of HSP's gapped (non-prelim): 21
length of query: 133
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 112
effective length of database: 17,151,101,840
effective search space: 1920923406080
effective search space used: 1920923406080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)