ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL355980.6| Human DNA sequence from clone RP11-295L12 on chr... 42 1.0
2gb|AC113195.8| Homo sapiens chromosome 18, clone RP11-1112K22, c... 42 1.0
3gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complet... 42 1.0
4ref|XM_365693.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 4.1
5emb|X64522.1|BLCIFIL B.lanceolatum mRNA for cytoplasmic intermed... 40 4.1
6emb|BX470098.15| Zebrafish DNA sequence from clone DKEY-148D16 i... 40 4.1
7gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Canc... 40 4.1
8gb|AC016766.6| Homo sapiens BAC clone RP11-558I6 from 2, complet... 40 4.1
9gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, comple... 40 4.1

>emb|AL355980.6| Human DNA sequence from clone RP11-295L12 on chromosome 13, complete
              sequence
          Length = 191856

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 125    ttcaaacttcttgcctgtaaaaattattt 153
              |||||| ||||||||||||||| ||||||
Sbjct: 124184 ttcaaatttcttgcctgtaaaatttattt 124156



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>gb|AC113195.8| Homo sapiens chromosome 18, clone RP11-1112K22, complete sequence
          Length = 162760

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 140   tgtaaaaattatttttctgct 160
             |||||||||||||||||||||
Sbjct: 93972 tgtaaaaattatttttctgct 93952



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>gb|AC092629.2| Homo sapiens BAC clone RP11-280J8 from 4, complete sequence
          Length = 148673

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   taaaaattatttttctgctgt 162
             |||||||||||||||||||||
Sbjct: 16411 taaaaattatttttctgctgt 16391



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>ref|XM_365693.1| Magnaporthe grisea 70-15 hypothetical protein (MG02395.4) partial
            mRNA
          Length = 6021

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  aagttgtgcgactggatgtg 284
            ||||||||||||||||||||
Sbjct: 4337 aagttgtgcgactggatgtg 4356



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>emb|X64522.1|BLCIFIL B.lanceolatum mRNA for cytoplasmic intermediate filament protein
          Length = 2117

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 290 cgttggagagctcgtccacc 309
           ||||||||||||||||||||
Sbjct: 669 cgttggagagctcgtccacc 650



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>emb|BX470098.15| Zebrafish DNA sequence from clone DKEY-148D16 in linkage group 12,
             complete sequence
          Length = 249826

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    catattttattcagaacaaa 60
             ||||||||||||||||||||
Sbjct: 55426 catattttattcagaacaaa 55445



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>gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104150

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tccttttttatcccccacga 113
             ||||||||||||||||||||
Sbjct: 38049 tccttttttatcccccacga 38068



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>gb|AC016766.6| Homo sapiens BAC clone RP11-558I6 from 2, complete sequence
          Length = 194374

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   taaaaattatttttctgctg 161
             ||||||||||||||||||||
Sbjct: 97136 taaaaattatttttctgctg 97117



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>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence
          Length = 179732

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   aaaaattatttttctgctgt 162
             ||||||||||||||||||||
Sbjct: 89162 aaaaattatttttctgctgt 89143


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,869,385
Number of Sequences: 3902068
Number of extensions: 2869385
Number of successful extensions: 62403
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62386
Number of HSP's gapped (non-prelim): 17
length of query: 311
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 289
effective length of database: 17,147,199,772
effective search space: 4955540734108
effective search space used: 4955540734108
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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