ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet56c09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC087888.12| Homo sapiens 12 BAC RP11-228G3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 87788 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Minus Query: 135 aaggaggcaaagagttatatataa 158 |||||||||||||||||||||||| Sbjct: 75558 aaggaggcaaagagttatatataa 75535
>gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, complete sequence Length = 118022 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Plus Query: 85 tacaaacacagacacagaccaa 106 |||||||||||||||||||||| Sbjct: 7121 tacaaacacagacacagaccaa 7142
>gb|U88181.1| Caenorhabditis elegans cosmid C55B6, complete sequence Length = 25003 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 tgagaaattattacaaacaca 94 ||||||||||||||||||||| Sbjct: 19896 tgagaaattattacaaacaca 19876
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agaagagaggagaaaaggagg 141 ||||||||||||||||||||| Sbjct: 140157 agaagagaggagaaaaggagg 140177
>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence Length = 218698 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agaagagaggagaaaaggagg 141 ||||||||||||||||||||| Sbjct: 15174 agaagagaggagaaaaggagg 15194
>gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosome 8, complete sequence Length = 199356 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 agaagagaggagaaaaggagg 141 ||||||||||||||||||||| Sbjct: 3705 agaagagaggagaaaaggagg 3685
>emb|AL158817.11| Human DNA sequence from clone RP3-429O6 on chromosome 6 Contains part of a novel gene and a CpG island, complete sequence Length = 120529 Score = 42.1 bits (21), Expect = 0.69 Identities = 24/25 (96%) Strand = Plus / Minus Query: 124 agagaggagaaaaggaggcaaagag 148 |||||||||||||||||| |||||| Sbjct: 57721 agagaggagaaaaggaggaaaagag 57697
>gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180335 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 gagaggagaaaaggaggcaaa 145 ||||||||||||||||||||| Sbjct: 8264 gagaggagaaaaggaggcaaa 8244
>gb|AC118139.3| Homo sapiens BAC clone RP11-461K12 from 4, complete sequence Length = 54171 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agaagagaggagaaaaggagg 141 ||||||||||||||||||||| Sbjct: 459 agaagagaggagaaaaggagg 479
>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence Length = 128411 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 agaagagaggagaaaaggagg 141 ||||||||||||||||||||| Sbjct: 127553 agaagagaggagaaaaggagg 127533
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agaagagaggagaaaaggagg 141 ||||||||||||||||||||| Sbjct: 18346945 agaagagaggagaaaaggagg 18346965
>gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, complete sequence Length = 180919 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 gataagtactagaagagagga 131 ||||||||||||||||||||| Sbjct: 90350 gataagtactagaagagagga 90330
>emb|CR382300.12| Zebrafish DNA sequence from clone DKEY-25E11 in linkage group 19, complete sequence Length = 202006 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agaagagaggagaaaaggagg 141 ||||||||||||||||||||| Sbjct: 35716 agaagagaggagaaaaggagg 35736
>gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete sequence Length = 179691 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 agaagagaggagaaaaggagg 141 ||||||||||||||||||||| Sbjct: 178150 agaagagaggagaaaaggagg 178170
>gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.186_H_2, complete sequence Length = 128501 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gataagtactagaagagagga 131 ||||||||||||||||||||| Sbjct: 88143 gataagtactagaagagagga 88163
>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence Length = 169832 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 ttacaaacacagacacagac 103 |||||||||||||||||||| Sbjct: 134653 ttacaaacacagacacagac 134672
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6 through 10 and partial cds Length = 688489 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tacaaacacagacacagacc 104 |||||||||||||||||||| Sbjct: 401220 tacaaacacagacacagacc 401239
>emb|Z81119.1|CET10H4 Caenorhabditis elegans Cosmid T10H4, complete sequence Length = 33319 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 agaaattattacaaacacag 95 |||||||||||||||||||| Sbjct: 12793 agaaattattacaaacacag 12812
>gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, complete sequence Length = 232817 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 aggagaaaaggaggcaaaga 147 |||||||||||||||||||| Sbjct: 78802 aggagaaaaggaggcaaaga 78783
>gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's Hospital Oakland Research Institute) complete sequence Length = 143705 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggagaaaaggaggcaaagag 148 |||||||||||||||||||| Sbjct: 125135 ggagaaaaggaggcaaagag 125116
>emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chromosome 6 Contains a fem-1 homolog a (C. elegans) (FEM1A) pseudogene, a keratin 18 (KRT18) pseudogene, a laminin receptor 1 (67kD, ribosomal protein SA) (LAMR1)(RPSA) pseudogene, a hepatocellular carcinoma-related putative tumor suppressor (LPTS) pseudogene and the 3' end of a novel gene, complete sequence Length = 210107 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 tactagaagagaggagaaaa 136 |||||||||||||||||||| Sbjct: 191747 tactagaagagaggagaaaa 191728
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 cagggcgtcggcgccagcga 213 |||||||||||||||||||| Sbjct: 1196169 cagggcgtcggcgccagcga 1196188
>gb|AC154570.2| Mus musculus BAC clone RP23-385M5 from chromosome 14, complete sequence Length = 209218 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tacaaacacagacacagacc 104 |||||||||||||||||||| Sbjct: 108436 tacaaacacagacacagacc 108417
>gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete sequence Length = 153203 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gcagctcagcccagggagga 183 |||||||||||||||||||| Sbjct: 13876 gcagctcagcccagggagga 13857
>emb|AL929280.6| Mouse DNA sequence from clone RP23-67M20 on chromosome 11 Contains a novel gene (2810471M01Rik), the 5' end of the gene for a novel protein (E030025D05Rik) and a CpG island, complete sequence Length = 216627 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 acacagacacagaccaagca 109 |||||||||||||||||||| Sbjct: 113992 acacagacacagaccaagca 113973
>emb|AL663060.6| Mouse DNA sequence from clone RP23-239H6 on chromosome 11, complete sequence Length = 218635 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 acacagaccaagcaagataa 115 |||||||||||||||||||| Sbjct: 54294 acacagaccaagcaagataa 54275
>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence Length = 181022 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gaagagaggagaaaaggagg 141 |||||||||||||||||||| Sbjct: 27254 gaagagaggagaaaaggagg 27235
>gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, complete sequence Length = 206801 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 agaggagaaaaggaggcaaagagt 149 ||||||||||||||| |||||||| Sbjct: 3628 agaggagaaaaggagtcaaagagt 3605
>dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBa, evx homologue on hoxBa Length = 235883 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agaagagaggagaaaaggag 140 |||||||||||||||||||| Sbjct: 76918 agaagagaggagaaaaggag 76937
>gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequence Length = 183894 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gaagagaggagaaaaggagg 141 |||||||||||||||||||| Sbjct: 48112 gaagagaggagaaaaggagg 48131
>gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, complete sequence Length = 227950 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gaaaaggaggcaaagagtta 151 |||||||||||||||||||| Sbjct: 105449 gaaaaggaggcaaagagtta 105468
>dbj|AK051229.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130019J16 product:unclassifiable, full insert sequence Length = 2020 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 ttacaaacacagacacagac 103 |||||||||||||||||||| Sbjct: 511 ttacaaacacagacacagac 492
>gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-2236G12, complete sequence Length = 40405 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gaagagaggagaaaaggagg 141 |||||||||||||||||||| Sbjct: 10132 gaagagaggagaaaaggagg 10151
>dbj|AK037782.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130049I01 product:unclassifiable, full insert sequence Length = 1553 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 ttacaaacacagacacagac 103 |||||||||||||||||||| Sbjct: 649 ttacaaacacagacacagac 630
>dbj|AK043901.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830048L15 product:unclassifiable, full insert sequence Length = 1373 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 aagagaggagaaaaggaggcaaag 146 |||||||||||| ||||||||||| Sbjct: 729 aagagaggagaagaggaggcaaag 706
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tacaaacacagacacagacc 104 |||||||||||||||||||| Sbjct: 21304663 tacaaacacagacacagacc 21304682 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 acatccttttttgtgctatg 75 |||||||||||||||||||| Sbjct: 19087865 acatccttttttgtgctatg 19087846
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ctagaagagaggagaaaagg 138 |||||||||||||||||||| Sbjct: 20600956 ctagaagagaggagaaaagg 20600937
>gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, complete sequence Length = 104269 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ggcagctcagcccagggagg 182 |||||||||||||||||||| Sbjct: 81855 ggcagctcagcccagggagg 81874
>emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chromosome 4, complete sequence Length = 129246 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gaagagaggagaaaaggagg 141 |||||||||||||||||||| Sbjct: 16741 gaagagaggagaaaaggagg 16760
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tacaaacacagacacagacc 104 |||||||||||||||||||| Sbjct: 100039 tacaaacacagacacagacc 100058
>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1616_B03 Length = 96081 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 acatccttttttgtgctatg 75 |||||||||||||||||||| Sbjct: 85349 acatccttttttgtgctatg 85330
>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21 Length = 137959 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ctagaagagaggagaaaagg 138 |||||||||||||||||||| Sbjct: 96514 ctagaagagaggagaaaagg 96495
>dbj|AK121910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105O17, full insert sequence Length = 1563 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 acatccttttttgtgctatg 75 |||||||||||||||||||| Sbjct: 859 acatccttttttgtgctatg 840
>dbj|AK101846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069I17, full insert sequence Length = 3061 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 acatccttttttgtgctatg 75 |||||||||||||||||||| Sbjct: 865 acatccttttttgtgctatg 846
>gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, complete sequence Length = 237824 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gaaaaggaggcaaagagtta 151 |||||||||||||||||||| Sbjct: 188353 gaaaaggaggcaaagagtta 188372
>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete sequence Length = 209914 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 aagagaggagaaaaggaggcaaag 146 |||||||||||| ||||||||||| Sbjct: 178379 aagagaggagaagaggaggcaaag 178356
>dbj|AB032374.1| Mus musculus gene for Tbr1, 5' flanking region Length = 4570 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 aagagaggagaaaaggaggcaaag 146 |||||||||||| ||||||||||| Sbjct: 3905 aagagaggagaagaggaggcaaag 3882 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,466,158 Number of Sequences: 3902068 Number of extensions: 2466158 Number of successful extensions: 241011 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 240494 Number of HSP's gapped (non-prelim): 517 length of query: 215 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 193 effective length of database: 17,147,199,772 effective search space: 3309409555996 effective search space used: 3309409555996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
