ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet56b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AP2B_HUMAN (Q92481) Transcription factor AP-2 beta (AP2-beta) (A... 29 3.9
2AP2B_CANFA (Q76HI7) Transcription factor AP-2 beta (AP2-beta) (A... 29 3.9
3GIS4_YEAST (Q04233) Protein GIS4 28 8.6

>AP2B_HUMAN (Q92481) Transcription factor AP-2 beta (AP2-beta) (Activating|
           enhancer-binding protein 2 beta)
          Length = 449

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +2

Query: 23  CSTYTALALHIMAXXXXXXXXFWKTLTMNRHNKNE-KGNKDSGSEEKIRK 169
           C+  TAL  ++          F    T NRH   E  G+K    EEK RK
Sbjct: 400 CAALTALQNYLTEALKGMDKMFLNNTTTNRHTSGEGPGSKTGDKEEKHRK 449



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>AP2B_CANFA (Q76HI7) Transcription factor AP-2 beta (AP2-beta) (Activating|
           enhancer-binding protein 2 beta)
          Length = 449

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +2

Query: 23  CSTYTALALHIMAXXXXXXXXFWKTLTMNRHNKNE-KGNKDSGSEEKIRK 169
           C+  TAL  ++          F    T NRH   E  G+K    EEK RK
Sbjct: 400 CAALTALQNYLTEALKGMDKMFLNNTTTNRHTSGEGPGSKTGDKEEKHRK 449



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>GIS4_YEAST (Q04233) Protein GIS4|
          Length = 774

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 101 TMNRHNKNEKGNKDSGSEEKIRK 169
           T N H  N KGN +S S+ +++K
Sbjct: 682 TKNSHKPNSKGNNESNSKNELKK 704


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,888,676
Number of Sequences: 219361
Number of extensions: 287020
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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