ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet53g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 133 2e-28
2emb|AL591304.1| Human DNA sequence from clone RP11-21G12 on chro... 42 0.43
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.43
4gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswel... 42 0.43
5dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.43
6gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, com... 40 1.7
7emb|AL845486.6| Mouse DNA sequence from clone RP23-236H7 on chro... 40 1.7
8gb|AY810608.1| Schistosoma japonicum SJCHGC04750 protein mRNA, p... 38 6.7
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 6.7
10gb|AC125321.4| Mus musculus BAC clone RP23-371B13 from chromosom... 38 6.7
11gb|AC121898.3| Mus musculus BAC clone RP24-161A24 from chromosom... 38 6.7
12emb|CR376762.12| Zebrafish DNA sequence from clone CH211-81G2 in... 38 6.7
13emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 38 6.7
14emb|AL592226.8| Human DNA sequence from clone RP11-16P12 on chro... 38 6.7
15emb|AL158149.14| Human DNA sequence from clone RP11-208G24 on ch... 38 6.7
16gb|AC144863.1| Homo sapiens fosmid clone XXFOS-89305C9 from 7, c... 38 6.7
17gb|AC092124.2| Homo sapiens chromosome 16 clone RP11-1079H2, com... 38 6.7
18gb|AC104635.12| Homo sapiens 3 BAC RP11-567G11 (Roswell Park Can... 38 6.7
19gb|AC083841.9| Homo sapiens chromosome 8, clone RP11-706C16, com... 38 6.7
20gb|AC108002.3| Homo sapiens chromosome 8, clone CTD-2292P10, com... 38 6.7
21gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome... 38 6.7
22gb|AC159022.2| Pan troglodytes BAC clone CH251-510P23 from chrom... 38 6.7
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.7
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.7
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.7
26gb|AC090551.6| Homo sapiens chromosome 16 clone RP11-197K24, com... 38 6.7
27gb|AC007938.1|AC007938 Homo sapiens clone RP11-2E11 from 7q31, c... 38 6.7
28gb|AC005703.2|AC005703 Homo sapiens chromosome 17, clone hRPK.84... 38 6.7
29emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 38 6.7
30gb|DQ141328.1| Danio rerio I-FBPL precursor, mRNA, complete cds 38 6.7
31gb|AC148372.3| Carollia perspicillata clone 102I5, complete sequ... 38 6.7
32gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, comp... 38 6.7
33gb|AC111041.11| Mus musculus chromosome 7, clone RP24-67N23, com... 38 6.7
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.7
35emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 38 6.7
36gb|AC165976.2| Gallus gallus BAC clone CH261-89G17 from chromoso... 38 6.7
37gb|AC147224.5| Mus musculus BAC clone RP23-101E7 from 15, comple... 38 6.7
38gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 38 6.7
39dbj|AB045582.1| Homo sapiens gene for PEG1/MEST protein, complet... 38 6.7 
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA)
          Length = 1174

 Score =  133 bits (67), Expect = 2e-28
 Identities = 67/67 (100%)
 Strand = Plus / Minus

                                                                        
Query: 75   cagagaaaaacaaacacatgaagaacagaacgagatgagacatatattacacacgatctg 134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 cagagaaaaacaaacacatgaagaacagaacgagatgagacatatattacacacgatctg 1115

                   
Query: 135  aacgtga 141
            |||||||
Sbjct: 1114 aacgtga 1108
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>emb|AL591304.1| Human DNA sequence from clone RP11-21G12 on chromosome 6, complete
             sequence
          Length = 35013

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 80    aaaaacaaacacatgaagaacagaa 104
             ||||||||||||||||| |||||||
Sbjct: 27216 aaaaacaaacacatgaacaacagaa 27240
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 82      aaacaaacacatgaagaacag 102
               |||||||||||||||||||||
Sbjct: 6009611 aaacaaacacatgaagaacag 6009631



 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 82      aaacaaacacatgaagaacag 102
               |||||||||||||||||||||
Sbjct: 6003871 aaacaaacacatgaagaacag 6003851
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>gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183562

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 80     aaaaacaaacacatgaagaacagaa 104
              ||||||||||||||||| |||||||
Sbjct: 144429 aaaaacaaacacatgaacaacagaa 144405
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>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F05
          Length = 147472

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    aaacaaacacatgaagaacag 102
             |||||||||||||||||||||
Sbjct: 30450 aaacaaacacatgaagaacag 30470



 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 82    aaacaaacacatgaagaacag 102
             |||||||||||||||||||||
Sbjct: 24710 aaacaaacacatgaagaacag 24690
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>gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, complete sequence
          Length = 235703

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaaaacaaacacatgaagaa 99
             ||||||||||||||||||||
Sbjct: 83070 aaaaacaaacacatgaagaa 83051
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>emb|AL845486.6| Mouse DNA sequence from clone RP23-236H7 on chromosome 2, complete
              sequence
          Length = 198481

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     ggatcagagaaaaacaaaca 90
              ||||||||||||||||||||
Sbjct: 102656 ggatcagagaaaaacaaaca 102675
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>gb|AY810608.1| Schistosoma japonicum SJCHGC04750 protein mRNA, partial cds
          Length = 783

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 78  agaaaaacaaacacatgaa 96
           |||||||||||||||||||
Sbjct: 744 agaaaaacaaacacatgaa 762
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 72      gatcagagaaaaacaaaca 90
               |||||||||||||||||||
Sbjct: 8781567 gatcagagaaaaacaaaca 8781549
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>gb|AC125321.4| Mus musculus BAC clone RP23-371B13 from chromosome 9, complete sequence
          Length = 196150

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 78     agaaaaacaaacacatgaa 96
              |||||||||||||||||||
Sbjct: 103892 agaaaaacaaacacatgaa 103874
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>gb|AC121898.3| Mus musculus BAC clone RP24-161A24 from chromosome 15, complete
             sequence
          Length = 193321

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    aaaaacaaacacatgaaga 98
             |||||||||||||||||||
Sbjct: 69679 aaaaacaaacacatgaaga 69697
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>emb|CR376762.12| Zebrafish DNA sequence from clone CH211-81G2 in linkage group 8,
             complete sequence
          Length = 183602

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 28    accacgaacgaataatccaacaaacaa 54
             |||| ||| ||||||||||||||||||
Sbjct: 70304 accaagaaagaataatccaacaaacaa 70278
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>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21,
             complete sequence
          Length = 141787

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    gatcagagaaaaacaaaca 90
             |||||||||||||||||||
Sbjct: 77095 gatcagagaaaaacaaaca 77113
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>emb|AL592226.8| Human DNA sequence from clone RP11-16P12 on chromosome 9 Contains a CpG
             island, complete sequence
          Length = 101339

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 77    gagaaaaacaaacacatgaagaa 99
             |||||||| ||||||||||||||
Sbjct: 41003 gagaaaaaaaaacacatgaagaa 41025
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>emb|AL158149.14| Human DNA sequence from clone RP11-208G24 on chromosome 9 Contains the
             GAS1 gene for growth arrest-specific 1, the 5' end of a
             novel gene and a CpG island, complete sequence
          Length = 102100

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    agagaaaaacaaacacatg 94
             |||||||||||||||||||
Sbjct: 16420 agagaaaaacaaacacatg 16438
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>gb|AC144863.1| Homo sapiens fosmid clone XXFOS-89305C9 from 7, complete sequence
          Length = 40442

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    ataatccaacaaacaacaa 57
             |||||||||||||||||||
Sbjct: 30483 ataatccaacaaacaacaa 30465
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>gb|AC092124.2| Homo sapiens chromosome 16 clone RP11-1079H2, complete sequence
          Length = 197992

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 75   cagagaaaaacaaacacat 93
            |||||||||||||||||||
Sbjct: 9688 cagagaaaaacaaacacat 9706
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>gb|AC104635.12| Homo sapiens 3 BAC RP11-567G11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 66672

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 76    agagaaaaacaaacacatgaaga 98
             ||||||||||||| |||||||||
Sbjct: 28927 agagaaaaacaaaaacatgaaga 28949
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>gb|AC083841.9| Homo sapiens chromosome 8, clone RP11-706C16, complete sequence
          Length = 203375

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     aaaaacaaacacatgaaga 98
              |||||||||||||||||||
Sbjct: 198184 aaaaacaaacacatgaaga 198166
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>gb|AC108002.3| Homo sapiens chromosome 8, clone CTD-2292P10, complete sequence
          Length = 100079

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    aaaaacaaacacatgaaga 98
             |||||||||||||||||||
Sbjct: 42470 aaaaacaaacacatgaaga 42452
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>gb|AC135208.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1364E02,
             complete sequence
          Length = 112265

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    gatcagagaaaaacaaaca 90
             |||||||||||||||||||
Sbjct: 24720 gatcagagaaaaacaaaca 24702
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>gb|AC159022.2| Pan troglodytes BAC clone CH251-510P23 from chromosome unknown,
             complete sequence
          Length = 185833

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 75    cagagaaaaacaaacacat 93
             |||||||||||||||||||
Sbjct: 42318 cagagaaaaacaaacacat 42300
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 72       gatcagagaaaaacaaaca 90
                |||||||||||||||||||
Sbjct: 27341167 gatcagagaaaaacaaaca 27341185
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 72      gatcagagaaaaacaaaca 90
               |||||||||||||||||||
Sbjct: 4896527 gatcagagaaaaacaaaca 4896509
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 72      gatcagagaaaaacaaaca 90
               |||||||||||||||||||
Sbjct: 8779402 gatcagagaaaaacaaaca 8779384
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>gb|AC090551.6| Homo sapiens chromosome 16 clone RP11-197K24, complete sequence
          Length = 174737

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 75    cagagaaaaacaaacacat 93
             |||||||||||||||||||
Sbjct: 66424 cagagaaaaacaaacacat 66406
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>gb|AC007938.1|AC007938 Homo sapiens clone RP11-2E11 from 7q31, complete sequence
          Length = 167237

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     ataatccaacaaacaacaa 57
              |||||||||||||||||||
Sbjct: 160153 ataatccaacaaacaacaa 160135
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>gb|AC005703.2|AC005703 Homo sapiens chromosome 17, clone hRPK.849_N_15, complete sequence
          Length = 233454

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    agaaaaacaaacacatgaa 96
             |||||||||||||||||||
Sbjct: 49672 agaaaaacaaacacatgaa 49690
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>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    gatcagagaaaaacaaaca 90
             |||||||||||||||||||
Sbjct: 41895 gatcagagaaaaacaaaca 41913
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>gb|DQ141328.1| Danio rerio I-FBPL precursor, mRNA, complete cds
          Length = 1389

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 77 gagaaaaacaaacacatga 95
          |||||||||||||||||||
Sbjct: 20 gagaaaaacaaacacatga 38
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>gb|AC148372.3| Carollia perspicillata clone 102I5, complete sequence
          Length = 161035

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 76     agagaaaaacaaacacatg 94
              |||||||||||||||||||
Sbjct: 103491 agagaaaaacaaacacatg 103509
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>gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, complete sequence
          Length = 214373

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 71     ggatcagagaaaaacaaac 89
              |||||||||||||||||||
Sbjct: 170067 ggatcagagaaaaacaaac 170085
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>gb|AC111041.11| Mus musculus chromosome 7, clone RP24-67N23, complete sequence
          Length = 175930

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    ggatcagagaaaaacaaac 89
             |||||||||||||||||||
Sbjct: 40016 ggatcagagaaaaacaaac 40034
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 72      gatcagagaaaaacaaaca 90
               |||||||||||||||||||
Sbjct: 4896509 gatcagagaaaaacaaaca 4896491
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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    gatcagagaaaaacaaaca 90
             |||||||||||||||||||
Sbjct: 63432 gatcagagaaaaacaaaca 63450
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>gb|AC165976.2| Gallus gallus BAC clone CH261-89G17 from chromosome ul, complete
             sequence
          Length = 176724

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 75    cagagaaaaacaaacacat 93
             |||||||||||||||||||
Sbjct: 68131 cagagaaaaacaaacacat 68149
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>gb|AC147224.5| Mus musculus BAC clone RP23-101E7 from 15, complete sequence
          Length = 201924

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    aaaaacaaacacatgaaga 98
             |||||||||||||||||||
Sbjct: 48696 aaaaacaaacacatgaaga 48678
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 76      agagaaaaacaaacacatg 94
               |||||||||||||||||||
Sbjct: 1443959 agagaaaaacaaacacatg 1443977
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>dbj|AB045582.1| Homo sapiens gene for PEG1/MEST protein, complete cds
          Length = 18882

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    ataatccaacaaacaacaa 57
             |||||||||||||||||||
Sbjct: 16085 ataatccaacaaacaacaa 16067


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,888,284
Number of Sequences: 3902068
Number of extensions: 1888284
Number of successful extensions: 144003
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143639
Number of HSP's gapped (non-prelim): 364
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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