ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet53e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN672_MOUSE (Q99LH4) Zinc finger protein 672 31 0.77
2Y943_DESVH (Q72DI6) Hypothetical UPF0324 membrane protein DVU0943 31 0.77
3Y2133_DESVH (Q72A64) Hypothetical UPF0324 membrane protein DVU2133 31 1.0
4ARI1_MOUSE (Q9Z1K5) Protein ariadne-1 homolog (ARI-1) (Ubiquitin... 28 6.5
5ARI1_HUMAN (Q9Y4X5) Protein ariadne-1 homolog (ARI-1) (Ubiquitin... 28 6.5
6ZAN_HUMAN (Q9Y493) Zonadhesin precursor 28 8.5
7S35B4_DROME (Q9W429) UDP-xylose and UDP-N-acetylglucosamine tran... 28 8.5
8SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3 28 8.5

>ZN672_MOUSE (Q99LH4) Zinc finger protein 672|
          Length = 468

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 19  SIHPTALPLHVARAHHIVLATLQAHTVSILYVC 117
           S   +ALP H+ARAH   + T+ A + S LY C
Sbjct: 137 SFRQSALPFHLARAHPPEIITVTAPSPSTLYHC 169



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>Y943_DESVH (Q72DI6) Hypothetical UPF0324 membrane protein DVU0943|
          Length = 579

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 65  WCARATC-NGSAVGWMDEWIRY 3
           WCAR  C +G +VGW++ W R+
Sbjct: 452 WCARVECTSGRSVGWIEIWNRF 473



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>Y2133_DESVH (Q72A64) Hypothetical UPF0324 membrane protein DVU2133|
          Length = 579

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 65  WCARATCN-GSAVGWMDEWIRY 3
           WCAR  C  G +VGW++ W R+
Sbjct: 452 WCARVECREGHSVGWIEIWHRF 473



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>ARI1_MOUSE (Q9Z1K5) Protein ariadne-1 homolog (ARI-1) (Ubiquitin-conjugating|
           enzyme E2-binding protein 1) (UbcH7-binding protein)
           (UbcM4-interacting protein 77)
          Length = 555

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 99  IDPLCMCRATTMYICMCALY 158
           +D LC CRAT MY  + A Y
Sbjct: 460 VDVLCQCRATLMYTYVFAFY 479



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>ARI1_HUMAN (Q9Y4X5) Protein ariadne-1 homolog (ARI-1) (Ubiquitin-conjugating|
           enzyme E2-binding protein 1) (UbcH7-binding protein)
           (UbcM4-interacting protein) (HHARI) (H7-AP2) (MOP-6)
          Length = 557

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 99  IDPLCMCRATTMYICMCALY 158
           +D LC CRAT MY  + A Y
Sbjct: 462 VDVLCQCRATLMYTYVFAFY 481



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>ZAN_HUMAN (Q9Y493) Zonadhesin precursor|
          Length = 2812

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 95   VCACSVASTIWCARATCNGSAVGW 24
            +C CSV + I C ++TC  + + W
Sbjct: 1892 LCTCSVHNNITCFQSTCKPNQICW 1915



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>S35B4_DROME (Q9W429) UDP-xylose and UDP-N-acetylglucosamine transporter-like|
          Length = 352

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 114 MCRATTMYICMCALYGLSS*SAGEEVILVV 203
           +C   T Y+C+ A+Y L++  A   V LVV
Sbjct: 255 LCNVVTQYVCISAVYVLTTECASLTVTLVV 284



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>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 30  YSASITCSTSTPYRTGYATSTHRIDPLCMCRATTMYICMCAL 155
           Y +S     S P    Y  S      +C+C    MY+CMC +
Sbjct: 348 YHSSHHSFQSVPQACWYLCSILSSVCVCVCVCVCMYVCMCVM 389


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,492,978
Number of Sequences: 219361
Number of extensions: 545880
Number of successful extensions: 1429
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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