| Clone Name | rbaet53e09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC168204.1| Medicago truncatula chromosome 7 BAC clone mth2-64h15, complete sequence Length = 45758 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 ttattatttttgctcaattaa 59 ||||||||||||||||||||| Sbjct: 12268 ttattatttttgctcaattaa 12288
>gb|AC136974.11| Medicago truncatula clone mth2-22e9, complete sequence Length = 124037 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 ttattatttttgctcaattaa 59 ||||||||||||||||||||| Sbjct: 11525 ttattatttttgctcaattaa 11505
>gb|AC150705.16| Medicago truncatula clone mth2-132b13, complete sequence Length = 121342 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 actatatctcttcttaattaa 29 ||||||||||||||||||||| Sbjct: 106005 actatatctcttcttaattaa 105985
>gb|AC105137.17| Homo sapiens chromosome 15, clone CTD-2562G15, complete sequence Length = 178059 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 tatttttgctcaattaacaac 63 ||||||||||||||||||||| Sbjct: 79311 tatttttgctcaattaacaac 79291
>gb|AY106338.1| Zea mays PCO074336 mRNA sequence Length = 849 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 gaaagggcatttcagcaaact 112 ||||||||||||||||||||| Sbjct: 56 gaaagggcatttcagcaaact 36
>ref|XM_709185.1| Candida albicans SC5314 hypothetical protein (CaO19.4107), mRNA Length = 1206 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tactatatctcttcttaatt 27 |||||||||||||||||||| Sbjct: 219 tactatatctcttcttaatt 200
>ref|XM_709047.1| Candida albicans SC5314 hypothetical protein (CaO19.11588), mRNA Length = 1206 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tactatatctcttcttaatt 27 |||||||||||||||||||| Sbjct: 219 tactatatctcttcttaatt 200
>ref|XM_670697.1| Plasmodium berghei strain ANKA hypothetical protein (PB103910.00.0) partial mRNA Length = 3190 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 attattatttttgctcaatt 57 |||||||||||||||||||| Sbjct: 1392 attattatttttgctcaatt 1373
>gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete sequence Length = 110437 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ccataatactatatctcttcttaa 25 ||||||||||||||||||| |||| Sbjct: 100298 ccataatactatatctcttattaa 100321
>gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete sequence Length = 129197 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 ccataatactatatctcttcttaa 25 ||||||||||||||||||| |||| Sbjct: 110557 ccataatactatatctcttattaa 110580
>gb|AC182808.1| Gasterosteus aculeatus clone VMRC28-105K03, complete sequence Length = 124886 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccatcggaaagggcatttca 105 |||||||||||||||||||| Sbjct: 120343 ccatcggaaagggcatttca 120324
>gb|AC113326.9| Mus musculus chromosome 1, clone RP23-454G7, complete sequence Length = 192734 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 catgccacattattattttt 49 |||||||||||||||||||| Sbjct: 105697 catgccacattattattttt 105716
>gb|AC139040.8| Mus musculus chromosome 19, clone RP23-292H20, complete sequence Length = 206197 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 aacacttgtacaagatggac 86 |||||||||||||||||||| Sbjct: 49033 aacacttgtacaagatggac 49052
>gb|AC110227.6| Mus musculus chromosome 9, clone RP24-331H14, complete sequence Length = 196758 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 taattaacatgccacatta 41 ||||||||||||||||||| Sbjct: 181929 taattaacatgccacatta 181911
>gb|AC118702.8| Mus musculus chromosome 5, clone RP24-166J1, complete sequence Length = 171263 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 tatatctcttcttaattaa 29 ||||||||||||||||||| Sbjct: 77308 tatatctcttcttaattaa 77290
>gb|AC125154.3| Mus musculus BAC clone RP24-380C2 from chromosome 3, complete sequence Length = 186277 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 128 tttattattcataagtata 146 ||||||||||||||||||| Sbjct: 130272 tttattattcataagtata 130290
>gb|AC141113.5| Medicago truncatula clone mth2-7h7, complete sequence Length = 138094 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 ttattatttttgctcaatt 57 ||||||||||||||||||| Sbjct: 130770 ttattatttttgctcaatt 130788
>gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete sequence Length = 119095 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 ttattatttttgctcaatt 57 ||||||||||||||||||| Sbjct: 38096 ttattatttttgctcaatt 38114
>emb|CR361548.8| Zebrafish DNA sequence from clone CH211-140M22 in linkage group 1, complete sequence Length = 146409 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 38 attattatttttgctcaattaac 60 ||||||||||||||| ||||||| Sbjct: 44329 attattatttttgctaaattaac 44351
>gb|AC174293.6| Medicago truncatula clone mth2-70h5, complete sequence Length = 132047 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 ttattatttttgctcaatt 57 ||||||||||||||||||| Sbjct: 55217 ttattatttttgctcaatt 55199
>emb|AL022720.1|HS357K22 Human DNA sequence from clone RP3-357K22 on chromosome Xq27.1-27.3, complete sequence Length = 145638 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 ctatatctcttcttaatta 28 ||||||||||||||||||| Sbjct: 87172 ctatatctcttcttaatta 87154
>gb|AC093015.5| Homo sapiens 12q BAC RP11-534K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115294 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 atgccacattattattttt 49 ||||||||||||||||||| Sbjct: 64446 atgccacattattattttt 64428
>dbj|AB219677.1| Minuartia arctica chloroplast rpl16 gene for ribosomal protein 16, intron and partial cds, specimen_voucher:K. Senni S1998 (MAK) Length = 961 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tatatctcttcttaattaa 29 ||||||||||||||||||| Sbjct: 835 tatatctcttcttaattaa 853
>dbj|AB219676.1| Minuartia arctica chloroplast rpl16 gene for ribosomal protein 16, intron and partial cds, specimen_voucher:K. Senni S243 (MAK) Length = 957 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tatatctcttcttaattaa 29 ||||||||||||||||||| Sbjct: 831 tatatctcttcttaattaa 849
>dbj|AB219675.1| Minuartia arctica chloroplast rpl16 gene for ribosomal protein 16, intron and partial cds, specimen_voucher:N. Fujii F01657 (MAK) Length = 957 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tatatctcttcttaattaa 29 ||||||||||||||||||| Sbjct: 831 tatatctcttcttaattaa 849
>dbj|AB219674.1| Minuartia arctica chloroplast rpl16 gene for ribosomal protein 16, intron and partial cds, specimen_voucher:K. Senni S2818 (MAK) Length = 957 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tatatctcttcttaattaa 29 ||||||||||||||||||| Sbjct: 831 tatatctcttcttaattaa 849
>dbj|AB219673.1| Minuartia arctica chloroplast rpl16 gene for ribosomal protein 16, intron and partial cds, specimen_voucher:K. Senni S1552 (MAK) Length = 957 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tatatctcttcttaattaa 29 ||||||||||||||||||| Sbjct: 831 tatatctcttcttaattaa 849
>dbj|AB219672.1| Minuartia arctica chloroplast rpl16 gene for ribosomal protein 16, intron and partial cds, specimen_voucher:N. Fujii F01070 (MAK) Length = 958 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tatatctcttcttaattaa 29 ||||||||||||||||||| Sbjct: 832 tatatctcttcttaattaa 850
>gb|AC164576.4| Mus musculus 10 BAC RP23-50F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205209 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 129 ttattattcataagtatag 147 ||||||||||||||||||| Sbjct: 463 ttattattcataagtatag 481
>gb|AC073358.14| Homo sapiens 3 BAC RP11-501M7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164078 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 attattatttttgctcaat 56 ||||||||||||||||||| Sbjct: 37790 attattatttttgctcaat 37808
>emb|AL844155.6| Mouse DNA sequence from clone RP23-163L4 on chromosome 2, complete sequence Length = 193188 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 attatttttgctcaattaa 59 ||||||||||||||||||| Sbjct: 59072 attatttttgctcaattaa 59054
>gb|AC153485.9| Mus musculus 10 BAC RP23-319B13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213412 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 129 ttattattcataagtatag 147 ||||||||||||||||||| Sbjct: 94993 ttattattcataagtatag 95011
>emb|BX649596.8| Zebrafish DNA sequence from clone CH211-69P4 in linkage group 14, complete sequence Length = 181055 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 cataatactatatctcttc 21 ||||||||||||||||||| Sbjct: 136476 cataatactatatctcttc 136458
>gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome 9, complete sequence Length = 179606 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 taattaacatgccacatta 41 ||||||||||||||||||| Sbjct: 4039 taattaacatgccacatta 4021
>gb|AC084288.9| Mus musculus Strain C57BL6/J Chromosome 2 BAC, RP23-108H5, complete sequence Length = 200393 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 attatttttgctcaattaa 59 ||||||||||||||||||| Sbjct: 27140 attatttttgctcaattaa 27158
>emb|AL807381.6| Zebrafish DNA sequence from clone CH211-222N24, complete sequence Length = 230718 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 ttattatttttgctcaatt 57 ||||||||||||||||||| Sbjct: 125095 ttattatttttgctcaatt 125077
>emb|BX950866.15| Zebrafish DNA sequence from clone DKEY-3J24 in linkage group 19, complete sequence Length = 96656 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 caacgtttattattcataa 141 ||||||||||||||||||| Sbjct: 5967 caacgtttattattcataa 5985
>gb|AC007751.3|AC007751 Homo sapiens, clone 5_A_11, complete sequence Length = 158963 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 129 ttattattcataagtatag 147 ||||||||||||||||||| Sbjct: 73591 ttattattcataagtatag 73609
>emb|CT737394.2| Pan troglodytes chromosome X clone PTB-130F19 map Xq28, complete sequence Length = 188890 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 ctatatctcttcttaatta 28 ||||||||||||||||||| Sbjct: 43260 ctatatctcttcttaatta 43242
>dbj|AP006544.1| Homo sapiens genomic DNA, chromosome 8q22.3, clone: KB1575F09, complete sequence Length = 126600 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 129 ttattattcataagtatag 147 ||||||||||||||||||| Sbjct: 22766 ttattattcataagtatag 22748
>emb|AL133243.3|CNS01DUG BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 559D11 of library RPCI-11 from chromosome 2 of Homo sapiens (Human) Length = 166318 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 tttttgctcaattaacaac 63 ||||||||||||||||||| Sbjct: 135467 tttttgctcaattaacaac 135449
>emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in linkage group 12, complete sequence Length = 211571 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 acattattatttttgctca 54 ||||||||||||||||||| Sbjct: 84970 acattattatttttgctca 84952
>gb|AC158945.6| Mus musculus chromosome 5, clone RP23-286J20, complete sequence Length = 210182 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tatatctcttcttaattaa 29 ||||||||||||||||||| Sbjct: 173003 tatatctcttcttaattaa 173021
>gb|DQ021341.1| Vibrio cholerae isolate 928-93 L-serine dehydratase 1 (sdaA) gene, partial cds Length = 1080 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 101 tttcagcaaacttggagcacggc 123 ||||||||||||||| ||||||| Sbjct: 656 tttcagcaaacttggcgcacggc 634 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,041,578 Number of Sequences: 3902068 Number of extensions: 2041578 Number of successful extensions: 142619 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 142521 Number of HSP's gapped (non-prelim): 98 length of query: 151 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 130 effective length of database: 17,151,101,840 effective search space: 2229643239200 effective search space used: 2229643239200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)