ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet53c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 3e-31
2dbj|AK099532.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 3e-31
3dbj|AK066637.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 3e-31
4dbj|AK060455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 3e-31
5gb|AY107335.1| Zea mays PCO136292 mRNA sequence 141 1e-30
6gb|AY106444.1| Zea mays PCO136291 mRNA sequence 100 4e-18
7ref|XM_467624.1| Oryza sativa (japonica cultivar-group), mRNA 98 2e-17
8dbj|AK058271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
9gb|AY105103.1| Zea mays PCO149145 mRNA sequence 92 1e-15
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 82 9e-13
11dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic D... 82 9e-13
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 74 2e-10
13dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic D... 74 2e-10
14dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic D... 74 2e-10
15ref|XM_482518.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-04
16ref|XM_507236.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 2e-04
17dbj|AK068922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
18dbj|AK060045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
19ref|XM_467905.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.013
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
21dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
22dbj|AK059854.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
23gb|AC117767.13| Mus musculus chromosome 1, clone RP24-507O16, co... 46 0.052
24gb|AC106374.6| Rattus norvegicus 4 BAC CH230-112C2 (Children's H... 44 0.20
25gb|BT013316.1| Lycopersicon esculentum clone 135001R, mRNA sequence 44 0.20
26gb|AC055825.8| Homo sapiens chromosome 17, clone RP11-22L4, comp... 44 0.20
27gb|AC092547.7| Homo sapiens 3q BAC RP11-371L14 (Roswell Park Can... 44 0.20
28gb|AC090983.13| Homo sapiens chromosome 15, clone RP11-385H1, co... 44 0.20
29gb|AC005725.1|AC005725 Homo sapiens chromosome 17, clone hRPK.68... 44 0.20
30gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 44 0.20
31gb|AC134611.4| Mus musculus BAC clone RP23-98D8 from chromosome ... 42 0.81
32gb|AC124397.5| Mus musculus BAC clone RP24-348J16 from chromosom... 42 0.81
33gb|AC004936.2| Homo sapiens PAC clone RP5-959C21 from 7, complet... 42 0.81
34emb|Y09699.1|ST09699 Solanum tuberosum mRNA for putative inward ... 42 0.81
35gb|AC092673.3| Homo sapiens BAC clone RP11-624A4 from 4, complet... 42 0.81
36gb|AC160828.3| Xenopus tropicalis clone ISB1-25H8 containing DAC... 42 0.81
37gb|AC013727.7| Homo sapiens BAC clone RP11-451G1 from 2, complet... 42 0.81
38gb|AC118591.7| Mus musculus chromosome 3, clone RP24-93G19, comp... 42 0.81
39gb|AC122180.9| Mus musculus chromosome 7, clone RP24-296E5, comp... 42 0.81
40gb|AC134536.5| Mus musculus BAC clone RP24-386B19 from 7, comple... 42 0.81
41gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, co... 40 3.2
42gb|AC146618.2| Mus musculus BAC clone RP23-5P3 from chromosome 1... 40 3.2
43gb|AC004382.1|HUAC004382 Homo sapiens Chromosome 16 BAC clone CI... 40 3.2
44gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, comple... 40 3.2
45emb|AL389924.17| Human DNA sequence from clone RP11-544N10 on ch... 40 3.2
46emb|AL591979.1| Listeria monocytogenes strain EGD, complete geno... 40 3.2
47emb|AJ308233.1|TNI308233 Tetraodon nigroviridis aw502783-like ge... 40 3.2
48gb|AC093924.3| Genomic sequence for Mus musculus, clone RP23-239... 40 3.2
49gb|AC093922.5| Genomic sequence for Mus musculus, clone RP23-155... 40 3.2
50gb|AC151832.3| Mus musculus BAC clone RP24-68M1 from chromosome ... 40 3.2
51gb|AC154345.2| Mus musculus BAC clone RP23-226O12 from chromosom... 40 3.2
52gb|AC069471.4|AC069471 Arabidopsis thaliana chromosome 1 BAC F13... 40 3.2
53gb|AC167564.1| Mus musculus BAC clone RP24-224G11 from chromosom... 40 3.2
54gb|AC122448.3| Mus musculus BAC clone RP24-243B16 from 15, compl... 40 3.2
55gb|AC145731.4| Mus musculus BAC clone RP24-499N24 from 9, comple... 40 3.2
56emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chro... 40 3.2
57gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 3.2
58gb|AC154329.3| Mus musculus BAC clone RP23-266K11 from chromosom... 40 3.2 
>dbj|AK105959.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D11, full
           insert sequence
          Length = 908

 Score =  143 bits (72), Expect = 3e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                       
Query: 135 gttcctgcgatcttcttcttgaagctctcgatgtcggtggccaactctttcctgctttcc 194
           ||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||
Sbjct: 566 gttccagcgatcttcttcttcaaggtctcgatgtcggtcgccaactctttcctgctctcc 507

                                                       
Query: 195 ttgaagaggaggtagcggtacacgaaccacccggtgtacccgag 238
           |||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 506 ttgaagaggaggtagcggtagacgaaccagccggtgtagccgag 463
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>dbj|AK099532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031L04, full
           insert sequence
          Length = 854

 Score =  143 bits (72), Expect = 3e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                       
Query: 135 gttcctgcgatcttcttcttgaagctctcgatgtcggtggccaactctttcctgctttcc 194
           ||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||
Sbjct: 571 gttccagcgatcttcttcttcaaggtctcgatgtcggtcgccaactctttcctgctctcc 512

                                                       
Query: 195 ttgaagaggaggtagcggtacacgaaccacccggtgtacccgag 238
           |||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 511 ttgaagaggaggtagcggtagacgaaccagccggtgtagccgag 468
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>dbj|AK066637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I08, full
           insert sequence
          Length = 767

 Score =  143 bits (72), Expect = 3e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                       
Query: 135 gttcctgcgatcttcttcttgaagctctcgatgtcggtggccaactctttcctgctttcc 194
           ||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||
Sbjct: 567 gttccagcgatcttcttcttcaaggtctcgatgtcggtcgccaactctttcctgctctcc 508

                                                       
Query: 195 ttgaagaggaggtagcggtacacgaaccacccggtgtacccgag 238
           |||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 507 ttgaagaggaggtagcggtagacgaaccagccggtgtagccgag 464
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>dbj|AK060455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-A05, full
           insert sequence
          Length = 901

 Score =  143 bits (72), Expect = 3e-31
 Identities = 96/104 (92%)
 Strand = Plus / Minus

                                                                       
Query: 135 gttcctgcgatcttcttcttgaagctctcgatgtcggtggccaactctttcctgctttcc 194
           ||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||
Sbjct: 573 gttccagcgatcttcttcttcaaggtctcgatgtcggtcgccaactctttcctgctctcc 514

                                                       
Query: 195 ttgaagaggaggtagcggtacacgaaccacccggtgtacccgag 238
           |||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 513 ttgaagaggaggtagcggtagacgaaccagccggtgtagccgag 470
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>gb|AY107335.1| Zea mays PCO136292 mRNA sequence
          Length = 683

 Score =  141 bits (71), Expect = 1e-30
 Identities = 107/119 (89%)
 Strand = Plus / Minus

                                                                       
Query: 126 gtttattctgttcctgcgatcttcttcttgaagctctcgatgtcggtggccaactctttc 185
           |||||||||||||| || || || ||||| ||| |||| ||||||| |||||||||||||
Sbjct: 528 gtttattctgttccagctatttttttcttcaaggtctcaatgtcggcggccaactctttc 469

                                                                      
Query: 186 ctgctttccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagcccaac 244
           ||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 468 ctgctttccttaaagagaaggtagcggtacacgaaccagccggtgtagccgagcccaac 410
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>gb|AY106444.1| Zea mays PCO136291 mRNA sequence
          Length = 767

 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 95/110 (86%)
 Strand = Plus / Minus

                                                                       
Query: 135 gttcctgcgatcttcttcttgaagctctcgatgtcggtggccaactctttcctgctttcc 194
           ||||| || ||||| ||||||| | |||| ||||||  | ||| |||||||||||||| |
Sbjct: 557 gttccagcaatctttttcttgagggtctcaatgtcgtcgaccagctctttcctgctttgc 498

                                                             
Query: 195 ttgaagaggaggtagcggtacacgaaccacccggtgtacccgagcccaac 244
           |||||||||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct: 497 ttgaagaggaggtagcggtagacgaaccagccggtgtagccgaggccaac 448
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>ref|XM_467624.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 480

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                       
Query: 173 ggccaactctttcctgctttccttgaagaggaggtagcggtacacgaaccacccggtgta 232
           |||||| || ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 435 ggccaattccttcctgctttccttgaagaggaggtagcggtacacaaaccagcctgtgta 376

                    
Query: 233 cccgagccc 241
           |||||||||
Sbjct: 375 cccgagccc 367
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>dbj|AK058271.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B08, full
           insert sequence
          Length = 523

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                       
Query: 173 ggccaactctttcctgctttccttgaagaggaggtagcggtacacgaaccacccggtgta 232
           |||||| || ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 284 ggccaattccttcctgctttccttgaagaggaggtagcggtacacaaaccagcctgtgta 225

                    
Query: 233 cccgagccc 241
           |||||||||
Sbjct: 224 cccgagccc 216
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>gb|AY105103.1| Zea mays PCO149145 mRNA sequence
          Length = 814

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                       
Query: 161 ctcgatgtcggtggccaactctttcctgctttccttgaagaggaggtagcggtacacgaa 220
           ||||||||||  ||| | |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 549 ctcgatgtcgtcggcgagctctttcctgctttccttgaagagaaggtagcggtagacgaa 490

                             
Query: 221 ccacccggtgtacccgag 238
           ||| |||||||| |||||
Sbjct: 489 ccatccggtgtagccgag 472
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                           
Query: 135     gttcctgcgatcttcttcttgaagctctcgatgtcggtggccaactctttcctgctttcc 194
               ||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||
Sbjct: 8762477 gttccagcgatcttcttcttcaaggtctcgatgtcggtcgccaactctttcctgctctcc 8762536

                
Query: 195     t 195
               |
Sbjct: 8762537 t 8762537



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                             
Query: 193     ccttgaagaggaggtagcggtacacgaaccacccggtgtacccgag 238
               |||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 8762742 ccttgaagaggaggtagcggtagacgaaccagccggtgtagccgag 8762787
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>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1001_B06
          Length = 134810

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 135   gttcctgcgatcttcttcttgaagctctcgatgtcggtggccaactctttcctgctttcc 194
             ||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||
Sbjct: 32798 gttccagcgatcttcttcttcaaggtctcgatgtcggtcgccaactctttcctgctctcc 32857

              
Query: 195   t 195
             |
Sbjct: 32858 t 32858



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                           
Query: 193   ccttgaagaggaggtagcggtacacgaaccacccggtgtacccgag 238
             |||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 33063 ccttgaagaggaggtagcggtagacgaaccagccggtgtagccgag 33108
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                 
Query: 193      ccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagccc 241
                ||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 30491174 ccttgaagaggaggtagcggtacacaaaccagcctgtgtacccgagccc 30491126
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>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0643A10
          Length = 187931

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                             
Query: 193  ccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagccc 241
            ||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 3182 ccttgaagaggaggtagcggtacacaaaccagcctgtgtacccgagccc 3134
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>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0617A09
          Length = 134804

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 193   ccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagccc 241
             ||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 97222 ccttgaagaggaggtagcggtacacaaaccagcctgtgtacccgagccc 97174
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>ref|XM_482518.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1040

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 190 tttccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagcccaac 244
           ||||||||||||| |||||||||||||| ||||| || | ||| || ||||||||
Sbjct: 631 tttccttgaagagcaggtagcggtacacaaaccatcccgagtagccaagcccaac 577
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>ref|XM_507236.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_B05.8 mRNA
          Length = 1079

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 190 tttccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagcccaac 244
           ||||||||||||| |||||||||||||| ||||| || | ||| || ||||||||
Sbjct: 558 tttccttgaagagcaggtagcggtacacaaaccatcccgagtagccaagcccaac 504
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>dbj|AK068922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170B19, full
           insert sequence
          Length = 1040

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 190 tttccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagcccaac 244
           ||||||||||||| |||||||||||||| ||||| || | ||| || ||||||||
Sbjct: 631 tttccttgaagagcaggtagcggtacacaaaccatcccgagtagccaagcccaac 577
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>dbj|AK060045.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G06, full
           insert sequence
          Length = 1079

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 190 tttccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagcccaac 244
           ||||||||||||| |||||||||||||| ||||| || | ||| || ||||||||
Sbjct: 558 tttccttgaagagcaggtagcggtacacaaaccatcccgagtagccaagcccaac 504
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>ref|XM_467905.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 989

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 185 cctgctttccttgaagaggaggta 208
           ||||||||||||||||||||||||
Sbjct: 641 cctgctttccttgaagaggaggta 618
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                    
Query: 193      ccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagcccaac 244
                |||||||||| |||||||||||||| ||||| || | ||| || ||||||||
Sbjct: 20810964 ccttgaagagcaggtagcggtacacaaaccatcccgagtagccaagcccaac 20811015
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>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1124_B05
          Length = 109917

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 193   ccttgaagaggaggtagcggtacacgaaccacccggtgtacccgagcccaac 244
             |||||||||| |||||||||||||| ||||| || | ||| || ||||||||
Sbjct: 42097 ccttgaagagcaggtagcggtacacaaaccatcccgagtagccaagcccaac 42148
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>dbj|AK059854.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H06, full
           insert sequence
          Length = 988

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 185 cctgctttccttgaagaggaggta 208
           ||||||||||||||||||||||||
Sbjct: 640 cctgctttccttgaagaggaggta 617
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>gb|AC117767.13| Mus musculus chromosome 1, clone RP24-507O16, complete sequence
          Length = 192892

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 12     cacatacatatatgtaacacaca 34
              |||||||||||||||||||||||
Sbjct: 160930 cacatacatatatgtaacacaca 160952
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>gb|AC106374.6| Rattus norvegicus 4 BAC CH230-112C2 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 163448

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 4      ttcttttacacatacatatatg 25
              ||||||||||||||||||||||
Sbjct: 132476 ttcttttacacatacatatatg 132497
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>gb|BT013316.1| Lycopersicon esculentum clone 135001R, mRNA sequence
          Length = 808

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 194 cttgaagaggaggtagcggtacacgaaccacccg 227
           ||||||||| ||||||||||| || |||||||||
Sbjct: 548 cttgaagagaaggtagcggtagacaaaccacccg 515
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>gb|AC055825.8| Homo sapiens chromosome 17, clone RP11-22L4, complete sequence
          Length = 74126

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 11    acacatacatatatgtaacacacaaatgca 40
             |||||||||||||||| ||||| |||||||
Sbjct: 17156 acacatacatatatgttacacagaaatgca 17185
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>gb|AC092547.7| Homo sapiens 3q BAC RP11-371L14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178328

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 11    acacatacatatatgtaacacacaaatgca 40
             |||||||||||||||| ||||| |||||||
Sbjct: 38660 acacatacatatatgttacacagaaatgca 38631
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>gb|AC090983.13| Homo sapiens chromosome 15, clone RP11-385H1, complete sequence
          Length = 203244

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 9      ttacacatacatatatgtaacacaca 34
              |||||||||||||||||| |||||||
Sbjct: 156131 ttacacatacatatatgttacacaca 156156
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>gb|AC005725.1|AC005725 Homo sapiens chromosome 17, clone hRPK.680_C_21, complete sequence
          Length = 197915

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 11     acacatacatatatgtaacacacaaatgca 40
              |||||||||||||||| ||||| |||||||
Sbjct: 195556 acacatacatatatgttacacagaaatgca 195527
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 146     cttcttcttgaagctctcgatg 167
               ||||||||||||||||||||||
Sbjct: 1275785 cttcttcttgaagctctcgatg 1275806
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>gb|AC134611.4| Mus musculus BAC clone RP23-98D8 from chromosome 15, complete sequence
          Length = 198894

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    tacacatacatatatgtaaca 30
             |||||||||||||||||||||
Sbjct: 35752 tacacatacatatatgtaaca 35732
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>gb|AC124397.5| Mus musculus BAC clone RP24-348J16 from chromosome 13, complete sequence
          Length = 191713

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 13     acatacatatatgtaacacacaaat 37
              ||||||| |||||||||||||||||
Sbjct: 125282 acatacagatatgtaacacacaaat 125258
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>gb|AC004936.2| Homo sapiens PAC clone RP5-959C21 from 7, complete sequence
          Length = 139949

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                           
Query: 10     tacacatacatatatgta-acacacaaat 37
              |||||||||||||||||| ||||||||||
Sbjct: 118281 tacacatacatatatgtatacacacaaat 118309
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>emb|Y09699.1|ST09699 Solanum tuberosum mRNA for putative inward rectifying potassium
          channel, SKT2
          Length = 2720

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 69 tcttcttccattacataatta 89
          |||||||||||||||||||||
Sbjct: 63 tcttcttccattacataatta 83
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>gb|AC092673.3| Homo sapiens BAC clone RP11-624A4 from 4, complete sequence
          Length = 166339

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 3    tttcttttacacatacatatatgta 27
            ||||||||||| |||||||||||||
Sbjct: 9931 tttcttttacagatacatatatgta 9955
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>gb|AC160828.3| Xenopus tropicalis clone ISB1-25H8 containing DACT1-prov gene, complete
             cds, complete sequence
          Length = 59418

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    catacatatatgtaacacaca 34
             |||||||||||||||||||||
Sbjct: 33199 catacatatatgtaacacaca 33219
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>gb|AC013727.7| Homo sapiens BAC clone RP11-451G1 from 2, complete sequence
          Length = 167519

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1      catttcttttacacatacata 21
              |||||||||||||||||||||
Sbjct: 114186 catttcttttacacatacata 114206
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>gb|AC118591.7| Mus musculus chromosome 3, clone RP24-93G19, complete sequence
          Length = 208878

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    tacacatacatatatgtaaca 30
             |||||||||||||||||||||
Sbjct: 91635 tacacatacatatatgtaaca 91615
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>gb|AC122180.9| Mus musculus chromosome 7, clone RP24-296E5, complete sequence
          Length = 167791

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    tacacatacatatatgtaaca 30
             |||||||||||||||||||||
Sbjct: 39985 tacacatacatatatgtaaca 40005
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>gb|AC134536.5| Mus musculus BAC clone RP24-386B19 from 7, complete sequence
          Length = 163463

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    tacacatacatatatgtaaca 30
             |||||||||||||||||||||
Sbjct: 73682 tacacatacatatatgtaaca 73662
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>gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, complete sequence
          Length = 171912

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    acacatacatatatgtaaca 30
             ||||||||||||||||||||
Sbjct: 18013 acacatacatatatgtaaca 17994
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>gb|AC146618.2| Mus musculus BAC clone RP23-5P3 from chromosome 10, complete sequence
          Length = 197233

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     acacatacatatatgtaaca 30
              ||||||||||||||||||||
Sbjct: 121257 acacatacatatatgtaaca 121238
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>gb|AC004382.1|HUAC004382 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-152E5, complete sequence
          Length = 217873

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     acacatacatatatgtaaca 30
              ||||||||||||||||||||
Sbjct: 189576 acacatacatatatgtaaca 189557
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>gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, complete sequence
          Length = 208833

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    acacatacatatatgtaacacaca 34
             ||||||| ||||||||||||||||
Sbjct: 27395 acacatatatatatgtaacacaca 27418
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>emb|AL389924.17| Human DNA sequence from clone RP11-544N10 on chromosome 9 Contains a
             arachidonate 15-lipoxygenase (ALOX15) pseudogene and the
             5' end of the FGD3 gene for FGD1 family, member 3
             (FLJ00004), complete sequence
          Length = 72402

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    acacatacatatatgtaacacaca 34
             ||||||||||| ||||||||||||
Sbjct: 37985 acacatacatagatgtaacacaca 37962
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>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12
          Length = 240050

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    gatcttcttcttgaagctct 162
              ||||||||||||||||||||
Sbjct: 234924 gatcttcttcttgaagctct 234943
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>emb|AJ308233.1|TNI308233 Tetraodon nigroviridis aw502783-like gene (partial), af290615-like gene,
              ak000823-like gene, vav-3 gene, amylase-1 gene, amylase-2
              gene and amylase-3 gene
          Length = 148106

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     atatatgtaacacacaaatg 38
              ||||||||||||||||||||
Sbjct: 131988 atatatgtaacacacaaatg 132007
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>gb|AC093924.3| Genomic sequence for Mus musculus, clone RP23-239M9, from chromosome
             17, complete sequence
          Length = 166277

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    acacatacatatatgtaacacaca 34
             |||||||||||||||||| |||||
Sbjct: 55148 acacatacatatatgtaatacaca 55125
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>gb|AC093922.5| Genomic sequence for Mus musculus, clone RP23-155E23, from chromosome 17,
              complete sequence
          Length = 109929

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 11     acacatacatatatgtaacacaca 34
              |||||||||||||||||| |||||
Sbjct: 108163 acacatacatatatgtaatacaca 108140
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>gb|AC151832.3| Mus musculus BAC clone RP24-68M1 from chromosome 10, complete sequence
          Length = 222815

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     acacatacatatatgtaaca 30
              ||||||||||||||||||||
Sbjct: 216155 acacatacatatatgtaaca 216136
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>gb|AC154345.2| Mus musculus BAC clone RP23-226O12 from chromosome 16, complete
             sequence
          Length = 169390

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ttacacatacatatatgtaa 28
             ||||||||||||||||||||
Sbjct: 83177 ttacacatacatatatgtaa 83196
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>gb|AC069471.4|AC069471 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete
              sequence
          Length = 126991

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     cattacataattagacaaaa 96
              ||||||||||||||||||||
Sbjct: 105555 cattacataattagacaaaa 105536
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>gb|AC167564.1| Mus musculus BAC clone RP24-224G11 from chromosome 14, complete sequence
          Length = 204945

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      tttacacatacatatatgta 27
              ||||||||||||||||||||
Sbjct: 110940 tttacacatacatatatgta 110921
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>gb|AC122448.3| Mus musculus BAC clone RP24-243B16 from 15, complete sequence
          Length = 159923

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 11     acacatacatatatgtaacacaca 34
              |||||||||||||| |||||||||
Sbjct: 115377 acacatacatatatataacacaca 115400
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>gb|AC145731.4| Mus musculus BAC clone RP24-499N24 from 9, complete sequence
          Length = 211847

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 16     tacatatatgtaacacacaaatgcagtg 43
              |||||||||||||||||||  |||||||
Sbjct: 127325 tacatatatgtaacacacatgtgcagtg 127352
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>emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chromosome 2, complete
             sequence
          Length = 204020

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    atacatatatgtaacacaca 34
             ||||||||||||||||||||
Sbjct: 85807 atacatatatgtaacacaca 85826
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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     gatcttcttcttgaagctct 162
               ||||||||||||||||||||
Sbjct: 1623168 gatcttcttcttgaagctct 1623187
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>gb|AC154329.3| Mus musculus BAC clone RP23-266K11 from chromosome 13, complete
            sequence
          Length = 188096

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   acacatacatatatgtaaca 30
            ||||||||||||||||||||
Sbjct: 7513 acacatacatatatgtaaca 7532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,852,229
Number of Sequences: 3902068
Number of extensions: 2852229
Number of successful extensions: 100010
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99861
Number of HSP's gapped (non-prelim): 150
length of query: 248
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 226
effective length of database: 17,147,199,772
effective search space: 3875267148472
effective search space used: 3875267148472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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