ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet53b05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide oxidoreductase (PCR) Length = 1490 Score = 543 bits (274), Expect = e-151 Identities = 291/299 (97%) Strand = Plus / Minus Query: 1 catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1488 catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 1429 Query: 61 cacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1428 cacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctt 1369 Query: 121 ctaaaagggcgtaaacatgataattaccaaataagtttnnnnnnncgacaagttgagcat 180 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1368 ctaaaaaggcgtaaacatgataattaccaaataagtttaaaaaaacgacaagttgagcat 1309 Query: 181 cggccggcgtcctagatgcatgcatgcatccatgggatttgcggtggatcatgcgagtcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1308 cggccggcgtcctagatgcatgcatgcatccatgggatttgcggtggatcatgcgagtcc 1249 Query: 241 gacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1248 gacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 1190
>emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlorophyilide reductase Length = 1484 Score = 194 bits (98), Expect = 1e-46 Identities = 138/150 (92%), Gaps = 1/150 (0%) Strand = Plus / Minus Query: 1 catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 60 ||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||| Sbjct: 1472 catcctcaatcagacctgcggttttattattc-atggttcgccgaaaattgtacatcttc 1414 Query: 61 cacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctt 120 ||||||||||||| |||||||||| | |||||||||||||||||| ||||||||||| || Sbjct: 1413 cacacgagatctacgcactctcgccgacactcgcaaggcctctcccgcgtaattgagttt 1354 Query: 121 ctaaaagggcgtaaacatgataattaccaa 150 |||||| |||||||| |||||||||||||| Sbjct: 1353 ctaaaaaggcgtaaaaatgataattaccaa 1324 Score = 137 bits (69), Expect = 2e-29 Identities = 72/73 (98%) Strand = Plus / Minus Query: 227 gatcatgcgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcgggg 286 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1241 gatcaggcgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcgggg 1182 Query: 287 tcgctggcctcct 299 ||||||||||||| Sbjct: 1181 tcgctggcctcct 1169
>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase Length = 1146 Score = 131 bits (66), Expect = 1e-27 Identities = 98/106 (92%), Gaps = 2/106 (1%) Strand = Plus / Minus Query: 1 catcctcaatcaggcctgcggttttattattccaatgttt-gccgaaaattgtacatctt 59 |||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 1146 catcctcaattaggcctgcggttttattattccaatggttcgccgaaaattgtacatctt 1087 Query: 60 ccacacgagatctatgcactctcgcggccactcgc-aaggcctctc 104 |||| ||||||||||| |||| ||||| ||||||| |||||||||| Sbjct: 1086 ccacccgagatctatgtactcccgcggacactcgcaaaggcctctc 1041 Score = 119 bits (60), Expect = 5e-24 Identities = 69/72 (95%) Strand = Plus / Minus Query: 228 atcatgcgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggt 287 |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 945 atcaggcgagtccgacgagcttctcactgagctcccagaccttgcgcgccttctcggggt 886 Query: 288 cgctggcctcct 299 |||||||||||| Sbjct: 885 cgctggcctcct 874
>emb|X84738.1|HVNADPHPO H.vulgare mRNA for NADPH-protochlorophyllide oxidoreductase Length = 1345 Score = 113 bits (57), Expect = 3e-22 Identities = 69/73 (94%) Strand = Plus / Minus Query: 227 gatcatgcgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcgggg 286 ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| | Sbjct: 1244 gatcatgcgagcccgacgagcttctcgctgagctcccagaccttcctggccttctcggtg 1185 Query: 287 tcgctggcctcct 299 ||||||||||||| Sbjct: 1184 tcgctggcctcct 1172
>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 85.7 bits (43), Expect = 7e-14 Identities = 61/67 (91%) Strand = Plus / Minus Query: 233 gcgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctg 292 ||||| |||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||| Sbjct: 97464 gcgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctg 97405 Query: 293 gcctcct 299 ||||||| Sbjct: 97404 gcctcct 97398
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 85.7 bits (43), Expect = 7e-14 Identities = 61/67 (91%) Strand = Plus / Minus Query: 233 gcgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctg 292 ||||| |||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||| Sbjct: 42560 gcgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctg 42501 Query: 293 gcctcct 299 ||||||| Sbjct: 42500 gcctcct 42494
>ref|XM_474360.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 234 cgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctgg 293 |||| |||||||||||||||||||| ||||||| ||| | ||||||||| |||||||||| Sbjct: 1159 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1100 Query: 294 cctcct 299 |||||| Sbjct: 1099 cctcct 1094
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 234 cgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctgg 293 |||| |||||||||||||||||||| ||||||| ||| | ||||||||| |||||||||| Sbjct: 5101 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 5042 Query: 294 cctcct 299 |||||| Sbjct: 5041 cctcct 5036
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 234 cgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctgg 293 |||| |||||||||||||||||||| ||||||| ||| | ||||||||| |||||||||| Sbjct: 34699539 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 34699480 Query: 294 cctcct 299 |||||| Sbjct: 34699479 cctcct 34699474
>dbj|AK104855.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B11, full insert sequence Length = 1384 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 234 cgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctgg 293 |||| |||||||||||||||||||| ||||||| ||| | ||||||||| |||||||||| Sbjct: 1231 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1172 Query: 294 cctcct 299 |||||| Sbjct: 1171 cctcct 1166
>dbj|AK103943.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G12, full insert sequence Length = 1384 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 234 cgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctgg 293 |||| |||||||||||||||||||| ||||||| ||| | ||||||||| |||||||||| Sbjct: 1231 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1172 Query: 294 cctcct 299 |||||| Sbjct: 1171 cctcct 1166
>dbj|AK103940.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G08, full insert sequence Length = 1384 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 234 cgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctgg 293 |||| |||||||||||||||||||| ||||||| ||| | ||||||||| |||||||||| Sbjct: 1231 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1172 Query: 294 cctcct 299 |||||| Sbjct: 1171 cctcct 1166
>dbj|AK065236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H23, full insert sequence Length = 1385 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 234 cgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctgg 293 |||| |||||||||||||||||||| ||||||| ||| | ||||||||| |||||||||| Sbjct: 1232 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1173 Query: 294 cctcct 299 |||||| Sbjct: 1172 cctcct 1167
>gb|AF496797.1| Zea mays cultivar H_3 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 364 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccgggtcgctggcctcct 138
>ref|NM_197169.1| Oryza sativa (japonica cultivar-group) putative dehydrogenase (OSJNBa0017E08.8), mRNA Length = 1564 Score = 65.9 bits (33), Expect = 7e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 239 ccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcc 298 |||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||| Sbjct: 1258 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 1199 Query: 299 t 299 | Sbjct: 1198 t 1198
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 65.9 bits (33), Expect = 7e-08 Identities = 54/61 (88%) Strand = Plus / Plus Query: 239 ccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcc 298 |||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||| Sbjct: 119147 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 119206 Query: 299 t 299 | Sbjct: 119207 t 119207
>emb|AJ567760.1|ZMA567760 Zea mays partial mRNA for NADPH-protochlorophyllide oxidoreductase (por gene) Length = 1116 Score = 65.9 bits (33), Expect = 7e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 239 ccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcc 298 ||||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||| Sbjct: 1106 ccgacgagcttctcgctgatctcccagagcttcttggccttgtcggcgtcgctggcctcc 1047 Query: 299 t 299 | Sbjct: 1046 t 1046
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 65.9 bits (33), Expect = 7e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 239 ccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcc 298 |||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||| Sbjct: 18387546 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 18387487 Query: 299 t 299 | Sbjct: 18387486 t 18387486
>dbj|AK068143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134C06, full insert sequence Length = 2944 Score = 65.9 bits (33), Expect = 7e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 239 ccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcc 298 |||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||| Sbjct: 2458 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 2399 Query: 299 t 299 | Sbjct: 2398 t 2398
>gb|AY103784.1| Zea mays PCO066646 mRNA sequence Length = 1664 Score = 65.9 bits (33), Expect = 7e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 239 ccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcc 298 ||||||||||||||||||| |||||||| ||| |||||| |||| ||||||||||||| Sbjct: 1288 ccgacgagcttctcgctgatctcccagagcttcttggccttgtcggcgtcgctggcctcc 1229 Query: 299 t 299 | Sbjct: 1228 t 1228
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 65.9 bits (33), Expect = 7e-08 Identities = 54/61 (88%) Strand = Plus / Minus Query: 239 ccgacgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcc 298 |||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||| Sbjct: 18397599 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 18397540 Query: 299 t 299 | Sbjct: 18397539 t 18397539
>gb|AF496822.1| Zea mays cultivar C_9 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496821.1| Zea mays cultivar D_9 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 363 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 193 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 136
>gb|AF496820.1| Zea mays cultivar D_6 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496819.1| Zea mays cultivar F_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496818.1| Zea mays cultivar Mo17 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496817.1| Zea mays cultivar D_7 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496816.1| Zea mays cultivar TX601 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496815.1| Zea mays cultivar B84 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 352 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 185 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 128
>gb|AF496814.1| Zea mays cultivar H60 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 340 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 170 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 113
>gb|AF496813.1| Zea mays cultivar DE811 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 355 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 185 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 128
>gb|AF496812.1| Zea mays cultivar 684 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496811.1| Zea mays cultivar D71-4HT protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 355 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 185 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 128
>gb|AF496810.1| Zea mays cultivar H99 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 299 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 164 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 107
>gb|AF496809.1| Zea mays cultivar IVANA protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496808.1| Zea mays cultivar CO109 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 361 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 191 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 134
>gb|AF496807.1| Zea mays cultivar I_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 356 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 186 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 129
>gb|AF496806.1| Zea mays cultivar B73 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496805.1| Zea mays cultivar F_2 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496804.1| Zea mays cultivar G_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 368 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496803.1| Zea mays cultivar B_6 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496802.1| Zea mays cultivar H_4 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496801.1| Zea mays cultivar F_4 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 355 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 185 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 128
>gb|AF496800.1| Zea mays cultivar F_3 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496799.1| Zea mays cultivar F_5 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 363 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 193 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 136
>gb|AF496798.1| Zea mays cultivar H_5 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496796.1| Zea mays cultivar J40 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496795.1| Zea mays cultivar 647 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496794.1| Zea mays cultivar B_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496793.1| Zea mays cultivar F_6 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496792.1| Zea mays cultivar C_5 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AF496791.1| Zea mays cultivar H_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 138
>gb|AY106314.1| Zea mays PCO151862 mRNA sequence Length = 1009 Score = 60.0 bits (30), Expect = 4e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 242 acgagcttctcgctgagctcccagaccttgcgggccttctcggggtcgctggcctcct 299 |||||||||||||||| |||||||| ||| ||||||||| || ||||||||||||| Sbjct: 725 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcct 668
>gb|BT012732.1| Lycopersicon esculentum clone 113661F, mRNA sequence Length = 1610 Score = 46.1 bits (23), Expect = 0.064 Identities = 41/47 (87%) Strand = Plus / Minus Query: 236 agtccgacgagcttctcgctgagctcccagaccttgcgggccttctc 282 ||||| ||||||||||| |||| |||||| | |||||| |||||||| Sbjct: 1277 agtccaacgagcttctcactgacctcccatagcttgcgtgccttctc 1231
>gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, complete sequence Length = 174055 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Minus Query: 195 gatgcatgcatgcatccatggga 217 ||||||||||||||||||||||| Sbjct: 139458 gatgcatgcatgcatccatggga 139436
>gb|AF243522.1|AF243522 Lycopersicon esculentum light dependent NADH:protochlorophyllide oxidoreductase 2 mRNA, partial cds Length = 1004 Score = 46.1 bits (23), Expect = 0.064 Identities = 41/47 (87%) Strand = Plus / Minus Query: 236 agtccgacgagcttctcgctgagctcccagaccttgcgggccttctc 282 ||||| ||||||||||| |||| |||||| | |||||| |||||||| Sbjct: 839 agtccaacgagcttctcactgacctcccatagcttgcgtgccttctc 793
>dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1100B9 Length = 151959 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Minus Query: 195 gatgcatgcatgcatccatggga 217 ||||||||||||||||||||||| Sbjct: 53966 gatgcatgcatgcatccatggga 53944
>dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1016F12, complete sequence Length = 200738 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Minus Query: 195 gatgcatgcatgcatccatggga 217 ||||||||||||||||||||||| Sbjct: 128595 gatgcatgcatgcatccatggga 128573
>gb|AC130675.7| Mus musculus chromosome 8, clone RP23-167D18, complete sequence Length = 193579 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 aaacatgataattaccaaata 153 ||||||||||||||||||||| Sbjct: 126070 aaacatgataattaccaaata 126050
>gb|AC145303.4| Mus musculus BAC clone RP23-411P20 from 14, complete sequence Length = 190168 Score = 42.1 bits (21), Expect = 0.99 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 tagatgcatgcatgcatccat 213 ||||||||||||||||||||| Sbjct: 31239 tagatgcatgcatgcatccat 31219
>gb|BC079655.1| Mus musculus cDNA clone IMAGE:6854812 Length = 4411 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 atgcatgcatgcatccatgg 215 |||||||||||||||||||| Sbjct: 1039 atgcatgcatgcatccatgg 1058
>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete sequence Length = 181811 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 aaattgtacatcttccacac 65 |||||||||||||||||||| Sbjct: 24311 aaattgtacatcttccacac 24292
>gb|AC091170.15| Homo sapiens chromosome 18, clone RP11-879D5, complete sequence Length = 198586 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tagatgcatgcatgcatcca 212 |||||||||||||||||||| Sbjct: 148151 tagatgcatgcatgcatcca 148170
>emb|AL162457.11| Human DNA sequence from clone RP11-429E11 on chromosome 20 Contains parts of the CDH4 gene for retinal cadherin 4 type 1 (R-cadherin), a novel gene, the gene for a novel protien (FLJ40547) and a CpG island, complete sequence Length = 130965 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 tagatgcatgcatgcatcca 212 |||||||||||||||||||| Sbjct: 99927 tagatgcatgcatgcatcca 99908
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gatgcatgcatgcatccatg 214 |||||||||||||||||||| Sbjct: 17525804 gatgcatgcatgcatccatg 17525785
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gagcttctcgctgagctccc 263 |||||||||||||||||||| Sbjct: 1409370 gagcttctcgctgagctccc 1409389
>gb|AC005007.1|AC005007 Homo sapiens BAC clone GS1-51M12 from 7p21-p22, complete sequence Length = 136862 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cttctaaaagggcgtaaaca 137 |||||||||||||||||||| Sbjct: 91490 cttctaaaagggcgtaaaca 91471
>dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14 Length = 127570 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gatgcatgcatgcatccatg 214 |||||||||||||||||||| Sbjct: 89982 gatgcatgcatgcatccatg 89963
>emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, complete sequence Length = 176196 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttttattattccaatgtttg 41 |||||||||||||||||||| Sbjct: 105180 ttttattattccaatgtttg 105199
>emb|AL669956.10| Mouse DNA sequence from clone RP23-222I1 on chromosome X, complete sequence Length = 199434 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 atgcatgcatgcatccatgg 215 |||||||||||||||||||| Sbjct: 19812 atgcatgcatgcatccatgg 19793
>gb|AC100778.5| Homo sapiens chromosome 18, clone RP11-110H1, complete sequence Length = 173671 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 tagatgcatgcatgcatcca 212 |||||||||||||||||||| Sbjct: 28343 tagatgcatgcatgcatcca 28362
>dbj|AB005556.1| Plectonema boryanum DNA for NADPH:protochlorophyllide oxidoreductase, hypothetical protein, partial and complete cds Length = 2131 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 233 gcgagtccgacgagcttctcgctgagctccca 264 |||||||| |||||||||||||| | |||||| Sbjct: 2030 gcgagtccaacgagcttctcgctcaactccca 1999 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,903,459 Number of Sequences: 3902068 Number of extensions: 1903459 Number of successful extensions: 50970 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50731 Number of HSP's gapped (non-prelim): 235 length of query: 299 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 277 effective length of database: 17,147,199,772 effective search space: 4749774336844 effective search space used: 4749774336844 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
