ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet53a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Ma... 28 6.5
2BGAL_ASPNG (P29853) Beta-galactosidase precursor (EC 3.2.1.23) (... 28 6.5

>ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Matrix|
           glycoprotein SC1/ECM2)
          Length = 699

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 105 LHVRNNNVKITHLLSSTASVFECTRCFGSFKLNCQN 212
           LH+ NN +KI  + S T   F C R + S  L  QN
Sbjct: 665 LHLENNYIKIREIPSYT---FSCIRSYSSIVLKPQN 697



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>BGAL_ASPNG (P29853) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
           (Tilactase) (Lactase-N)
          Length = 1006

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 87  NKRSS*LHVRNNNVKITHLLSSTASVF 167
           N R S +HV ++NV  T+++ STA VF
Sbjct: 466 NGRDSKIHVTDHNVSGTNIIYSTAEVF 492


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,950,485
Number of Sequences: 219361
Number of extensions: 337385
Number of successful extensions: 767
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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