ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet53a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCN1_MAGGR (Q52DM9) Defective in cullin neddylation protein 1 31 0.90
2HLDD_NEIMB (Q9K002) ADP-L-glycero-D-manno-heptose-6-epimerase (E... 29 2.6
3HLDD_NEIGO (Q51061) ADP-L-glycero-D-manno-heptose-6-epimerase (E... 29 2.6
4KDUI_OCEIH (Q8EMM9) 4-deoxy-L-threo-5-hexosulose-uronate ketol-i... 29 3.4
5HLDD_NEIMA (Q9JQX8) ADP-L-glycero-D-manno-heptose-6-epimerase (E... 28 4.5
6DFRA_PETHY (P14720) Dihydroflavonol-4-reductase (EC 1.1.1.219) (... 28 4.5
7KDUI_CAUCR (Q9A873) 4-deoxy-L-threo-5-hexosulose-uronate ketol-i... 28 7.6
8PPK_XYLFT (Q87A63) Polyphosphate kinase (EC 2.7.4.1) (Polyphosph... 27 10.0
9PPK_XYLFA (Q9PAC7) Polyphosphate kinase (EC 2.7.4.1) (Polyphosph... 27 10.0

>DCN1_MAGGR (Q52DM9) Defective in cullin neddylation protein 1|
          Length = 281

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -3

Query: 287 YGEYNWGQTMEKKVRHEVMAIATRSTVDVPFTYWQRD----VTIDGKVE 153
           Y + NW +T+ K + ++ +  A +ST D   ++W  +      IDG VE
Sbjct: 216 YLKNNWSRTVSKDMWNQTLDFAVKSTADSTLSFWTPEGSWPSVIDGFVE 264



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>HLDD_NEIMB (Q9K002) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)|
           (ADP-L-glycero-beta-D-manno-heptose-6-epimerase)
           (ADP-glyceromanno-heptose 6-epimerase) (ADP-hep
           6-epimerase) (AGME)
          Length = 334

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 164 GKVEETLMRDGLYTGINSYNFNFDTVEEKLPERIP 60
           G   +T+  DGLY   N+Y +  D ++    ERIP
Sbjct: 78  GACSDTMNHDGLYMMDNNYQYTLDLLDWCQDERIP 112



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>HLDD_NEIGO (Q51061) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)|
           (ADP-L-glycero-beta-D-manno-heptose-6-epimerase)
           (ADP-glyceromanno-heptose 6-epimerase) (ADP-hep
           6-epimerase) (AGME)
          Length = 334

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 164 GKVEETLMRDGLYTGINSYNFNFDTVEEKLPERIP 60
           G   +T+  DGLY   N+Y +  D ++    ERIP
Sbjct: 78  GACSDTMNHDGLYMMENNYQYTLDLLDWCQDERIP 112



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>KDUI_OCEIH (Q8EMM9) 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC|
           5.3.1.17) (5-keto-4-deoxyuronate isomerase) (DKI
           isomerase)
          Length = 277

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 176 VTIDGKVEETLMRDGLYTGINSYNFNFDTVEEKLPER 66
           +T+DG+V E   RD LY G  + N   ++++   P R
Sbjct: 88  ITVDGEVYELDHRDCLYVGKENKNILIESIDSDNPAR 124



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>HLDD_NEIMA (Q9JQX8) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)|
           (ADP-L-glycero-beta-D-manno-heptose-6-epimerase)
           (ADP-glyceromanno-heptose 6-epimerase) (ADP-hep
           6-epimerase) (AGME)
          Length = 334

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 164 GKVEETLMRDGLYTGINSYNFNFDTVEEKLPERIP 60
           G   +T+  DGLY   N+Y +  D ++    ERIP
Sbjct: 78  GACSDTMNYDGLYMMDNNYQYTLDLLDWCQDERIP 112



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>DFRA_PETHY (P14720) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)|
           (Dihydrokaempferol 4-reductase)
          Length = 380

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -3

Query: 257 EKKVRHEVMAIATRSTVDVPFTYWQRDVTIDGKVEETLMR-DGLYTGINSYNFNFDTVEE 81
           +KKV+H    +      D   T W+ D+T++G  +E +    G++      +F     E 
Sbjct: 52  KKKVKH----LLELPKADTNLTLWKADLTVEGSFDEAIQGCQGVFHVATPMDF-----ES 102

Query: 80  KLPERIPLT*SIRFILIII 24
           K PE   +  ++R +L II
Sbjct: 103 KDPENEVIKPTVRGMLSII 121



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>KDUI_CAUCR (Q9A873) 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC|
           5.3.1.17) (5-keto-4-deoxyuronate isomerase) (DKI
           isomerase)
          Length = 279

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 176 VTIDGKVEETLMRDGLYTGINSYNFNFDTVE 84
           +T+DG   E + RDGLY  + + +  F+ V+
Sbjct: 92  ITVDGVAYEIVPRDGLYVTMGAKDVTFEGVD 122



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>PPK_XYLFT (Q87A63) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid|
           kinase) (ATP-polyphosphate phosphotransferase)
          Length = 698

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 158 VEETLMRDGLYTG--INSYNFNFDTVEEKLPERIPLT*SIRFILI 30
           V +     GLY    ++  +FNF  + + L E++PL   +RF+ I
Sbjct: 15  VSQQFRDPGLYLNRELSQLDFNFRVLAQALDEQVPLLERLRFLCI 59



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>PPK_XYLFA (Q9PAC7) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid|
           kinase) (ATP-polyphosphate phosphotransferase)
          Length = 698

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 158 VEETLMRDGLYTG--INSYNFNFDTVEEKLPERIPLT*SIRFILI 30
           V +     GLY    ++  +FNF  + + L E++PL   +RF+ I
Sbjct: 15  VSQQFRDPGLYLNRELSQLDFNFRVLAQALDEQVPLLERLRFLCI 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,155,245
Number of Sequences: 219361
Number of extensions: 518431
Number of successful extensions: 1987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1986
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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