ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet52h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast... 39 0.005
2CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloropla... 39 0.005
3TOLB_CHLTR (O84604) Protein tolB precursor 28 6.3
4KLK9_HUMAN (Q9UKQ9) Kallikrein-9 precursor (EC 3.4.21.-) (Kallik... 28 8.2
5ENV_GALV (P21415) Env polyprotein precursor [Contains: Coat prot... 28 8.2

>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -2

Query: 246 AHLADPGHATIFRAFAPK 193
           AHLADPGHATIF AF+PK
Sbjct: 253 AHLADPGHATIFAAFSPK 270



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>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCI type II CAB-7)
          Length = 270

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -2

Query: 246 AHLADPGHATIFRAFAPK 193
           AHLADPGHATIF AF+PK
Sbjct: 253 AHLADPGHATIFAAFSPK 270



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>TOLB_CHLTR (O84604) Protein tolB precursor|
          Length = 431

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 20  IVFLHRLHQSTSTHPTSMHCSTITYHHPREK*SNSTSDLLPRGSTLLGFVANSQRVPYLG 199
           +VFL  L       P+++HC  +  H        S S LLP   +LL    +S++  YL 
Sbjct: 5   VVFLRSLLCLLCLLPSTLHCEDLEIH------VRSESSLLPIAVSLLSSPKDSRQASYLA 58

Query: 200 A 202
           +
Sbjct: 59  S 59



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>KLK9_HUMAN (Q9UKQ9) Kallikrein-9 precursor (EC 3.4.21.-) (Kallikrein-like|
           protein 3) (KLK-L3)
          Length = 250

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +3

Query: 54  VHIQQACIAPQLHTIIHGKNNLIPPAIFFPVVAHSSDLLLTPN 182
           +++ Q C++P +  +I G   +  P   FPV    +++ +  N
Sbjct: 130 LNLSQTCVSPGMQCLISGWGAVSSPKALFPVTLQCANISILEN 172



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>ENV_GALV (P21415) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 667

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 199 PQVRNTLGVSNKSEECATTGKKIAGGIRLFFPWMMVCNCGAMHACWMC 56
           P VR T+   N      TTG ++   ++  F  +   N GA  +CW+C
Sbjct: 312 PTVRKTIVTLNTPPP--TTGDRLFDLVQGAFLTLNATNPGATESCWLC 357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,858,711
Number of Sequences: 219361
Number of extensions: 685470
Number of successful extensions: 2107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2107
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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