ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet52g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SKP1B_ARATH (Q9FHW7) SKP1-like protein 1B (SKP1-like 2) (UFO-bin... 33 0.15
2SKP1A_ARATH (Q39255) SKP1-like protein 1A (SKP1-like 1) (UFO-bin... 33 0.15
3NOIL_ELAOL (Q8S3M3) NOI-like protein 28 5.0

>SKP1B_ARATH (Q9FHW7) SKP1-like protein 1B (SKP1-like 2) (UFO-binding protein 2)|
          Length = 171

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = -3

Query: 218 EEEEIRRENQWAFE 177
           EEEE+RRENQWAFE
Sbjct: 158 EEEEVRRENQWAFE 171



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>SKP1A_ARATH (Q39255) SKP1-like protein 1A (SKP1-like 1) (UFO-binding protein 1)|
          Length = 160

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = -3

Query: 218 EEEEIRRENQWAFE 177
           EEEE+RRENQWAFE
Sbjct: 147 EEEEVRRENQWAFE 160



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>NOIL_ELAOL (Q8S3M3) NOI-like protein|
          Length = 228

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 53  RLEDNYNPLRRHKEER*NADMTNTKSWSFSTAAAA 157
           R  DN+ P  +H   R N D+   KSW F+T  A+
Sbjct: 130 RNSDNWLPQHQH-HRRTNKDLAEGKSWLFTTTTAS 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,318,456
Number of Sequences: 219361
Number of extensions: 393763
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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