| Clone Name | rbaet52g08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, complete cds Length = 1259 Score = 56.0 bits (28), Expect = 5e-05 Identities = 107/130 (82%), Gaps = 5/130 (3%) Strand = Plus / Minus Query: 39 taagtaggcttgatggtaatttccccttgcctttgcatgggaaattgataattcgaccgt 98 |||||||| ||||| |||||| | || |||||||||||| |||| || ||||||| || Sbjct: 1201 taagtaggattgatagtaatt-ctccatgcctttgcatgagaaagtgggaattcgattgt 1143 Query: 99 tacatg---tgtagatgcacgcatgctttgctggtgcacgtacttaaa-tacacgtttca 154 ||||| ||| |||||| ||||| ||||||| ||| ||||| |||| ||||| ||||| Sbjct: 1142 tacataatatgtggatgcatgcatgatttgctgctgctcgtacataaactacacatttca 1083 Query: 155 agtgctggta 164 |||||||||| Sbjct: 1082 agtgctggta 1073
>gb|AY506486.1| Triticum aestivum PXCW4-like gene, complete sequence Length = 2435 Score = 44.1 bits (22), Expect = 0.20 Identities = 59/69 (85%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 18 tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77 |||||||||| |||||||||||| ||| ||||| |||| ||| |||||||||||||| Sbjct: 2073 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2017 Query: 78 ggaaattga 86 |||||||| Sbjct: 2016 agaaattga 2008 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 aaatacacgtttcaagtgctggta 164 ||||||| |||||||||||||||| Sbjct: 1934 aaatacatgtttcaagtgctggta 1911
>gb|AY506485.1| Triticum aestivum PXCW3-like gene, complete sequence Length = 2466 Score = 44.1 bits (22), Expect = 0.20 Identities = 59/69 (85%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 18 tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77 |||||||||| |||||||||||| ||| ||||| |||| ||| |||||||||||||| Sbjct: 2104 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2048 Query: 78 ggaaattga 86 |||||||| Sbjct: 2047 agaaattga 2039 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 aaatacacgtttcaagtgctggta 164 ||||||| |||||||||||||||| Sbjct: 1965 aaatacatgtttcaagtgctggta 1942
>gb|AY506484.1| Triticum aestivum PXCW2-like gene, complete sequence Length = 2456 Score = 44.1 bits (22), Expect = 0.20 Identities = 59/69 (85%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 18 tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77 |||||||||| |||||||||||| ||| ||||| |||| ||| |||||||||||||| Sbjct: 2095 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2039 Query: 78 ggaaattga 86 |||||||| Sbjct: 2038 agaaattga 2030 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 aaatacacgtttcaagtgctggta 164 ||||||| |||||||||||||||| Sbjct: 1956 aaatacatgtttcaagtgctggta 1933
>emb|X53675.1|TAPEROXIG Wheat (T. aesitvum) mRNA for peroxidase (EC 1.11.1.7) Length = 3240 Score = 44.1 bits (22), Expect = 0.20 Identities = 59/69 (85%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 18 tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77 |||||||||| |||||||||||| ||| ||||| |||| ||| |||||||||||||| Sbjct: 2786 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2730 Query: 78 ggaaattga 86 |||||||| Sbjct: 2729 agaaattga 2721 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 aaatacacgtttcaagtgctggta 164 ||||||| |||||||||||||||| Sbjct: 2647 aaatacatgtttcaagtgctggta 2624
>emb|X85228.1|TAPOX2 T.aestivum pox2 gene Length = 1658 Score = 44.1 bits (22), Expect = 0.20 Identities = 60/72 (83%), Gaps = 3/72 (4%) Strand = Plus / Minus Query: 96 cgttacatgtgtagatgcacgcatgctttgctggtgcacgtactt---aaatacacgttt 152 |||||||| || |||||| ||||| ||||||| ||||| | ||| ||||||||| || Sbjct: 1550 cgttacatacgttgatgcatgcatgatttgctgctgcacatgctttgaaaatacacgatt 1491 Query: 153 caagtgctggta 164 |||||||||||| Sbjct: 1490 caagtgctggta 1479
>gb|AF387866.1| Triticum aestivum peroxidase (pxc1A) gene, pxc1A-2A allele, complete cds Length = 2458 Score = 44.1 bits (22), Expect = 0.20 Identities = 59/69 (85%), Gaps = 3/69 (4%) Strand = Plus / Minus Query: 18 tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77 |||||||||| |||||||||||| ||| ||||| |||| ||| |||||||||||||| Sbjct: 2098 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2042 Query: 78 ggaaattga 86 |||||||| Sbjct: 2041 agaaattga 2033 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 aaatacacgtttcaagtgctggta 164 ||||||| |||||||||||||||| Sbjct: 1959 aaatacatgtttcaagtgctggta 1936
>emb|X56011.1|TAPERO Wheat mRNA for peroxidase Length = 1247 Score = 42.1 bits (21), Expect = 0.78 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 102 atgtgtagatgcacgcatgctttgctggtgcacgtac-ttaaatacac-gtttcaagtgc 159 ||||||||||||| ||||| ||||||| | | ||||| | |||||||| |||||||| || Sbjct: 1170 atgtgtagatgcatgcatgatttgctgctactcgtacataaaatacacggtttcaagagc 1111 Query: 160 tggta 164 ||||| Sbjct: 1110 tggta 1106
>emb|X58396.1|HVPEROXI Barley mRNA for peroxidase (EC=1.11.1.7) Length = 1285 Score = 42.1 bits (21), Expect = 0.78 Identities = 53/61 (86%), Gaps = 2/61 (3%) Strand = Plus / Minus Query: 105 tgtagatgcacgcatgctttgctggtgcacgtacttaaa-tacacgttt-caagtgctgg 162 |||||||||| ||||| ||||||| || |||||||||| || |||||| |||||||||| Sbjct: 1163 tgtagatgcatgcatgatttgctgccgctcgtacttaaaatagacgttttcaagtgctgg 1104 Query: 163 t 163 | Sbjct: 1103 t 1103
>gb|AE000659.1|HUAE000659 Homo sapiens T-cell receptor alpha delta locus from bases 250472 to 501670 (section 2 of 5) of the Complete Nucleotide Sequence Length = 251199 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gggaaattgataattcgacc 96 |||||||||||||||||||| Sbjct: 129606 gggaaattgataattcgacc 129587
>ref|NM_001003971.1| Mus musculus SUMO1/sentrin specific peptidase 7 (Senp7), transcript variant 2, mRNA Length = 4802 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gtgtaagtaggcttgatggt 55 |||||||||||||||||||| Sbjct: 2151 gtgtaagtaggcttgatggt 2132
>ref|NM_025483.3| Mus musculus SUMO1/sentrin specific peptidase 7 (Senp7), transcript variant 1, mRNA Length = 4883 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gtgtaagtaggcttgatggt 55 |||||||||||||||||||| Sbjct: 2232 gtgtaagtaggcttgatggt 2213
>gb|BC058593.1| Mus musculus SUMO1/sentrin specific peptidase 7, transcript variant 1, mRNA (cDNA clone MGC:67838 IMAGE:5364345), complete cds Length = 4788 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gtgtaagtaggcttgatggt 55 |||||||||||||||||||| Sbjct: 2120 gtgtaagtaggcttgatggt 2101
>gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complete sequence Length = 138604 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 atactgatttgtattgacca 185 |||||||||||||||||||| Sbjct: 109299 atactgatttgtattgacca 109318
>gb|AF429387.1|AF429387 Hevea brasiliensis truncated acetyl Co-A acetyltransferase-like protein mRNA, complete cds Length = 960 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tgcctttgcatgggaaattg 85 |||||||||||||||||||| Sbjct: 642 tgcctttgcatgggaaattg 661
>dbj|AK085060.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430031L19 product:similar to SUMO-1 SPECIFIC PROTEASE 2 [Homo sapiens], full insert sequence Length = 3695 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gtgtaagtaggcttgatggt 55 |||||||||||||||||||| Sbjct: 2177 gtgtaagtaggcttgatggt 2158
>dbj|AK083086.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530049J22 product:similar to SUMO-1 SPECIFIC PROTEASE 2 [Homo sapiens], full insert sequence Length = 3683 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gtgtaagtaggcttgatggt 55 |||||||||||||||||||| Sbjct: 2163 gtgtaagtaggcttgatggt 2144
>gb|AC154275.2| Mus musculus BAC clone RP24-299G8 from chromosome 16, complete sequence Length = 183487 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gtgtaagtaggcttgatggt 55 |||||||||||||||||||| Sbjct: 96818 gtgtaagtaggcttgatggt 96799
>dbj|AK122542.1| Mus musculus mRNA for mKIAA1707 protein Length = 4823 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gtgtaagtaggcttgatggt 55 |||||||||||||||||||| Sbjct: 2173 gtgtaagtaggcttgatggt 2154
>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome 14 Length = 1071646 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gggaaattgataattcgacc 96 |||||||||||||||||||| Sbjct: 380077 gggaaattgataattcgacc 380058 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,986,636 Number of Sequences: 3902068 Number of extensions: 1986636 Number of successful extensions: 34676 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 34633 Number of HSP's gapped (non-prelim): 40 length of query: 241 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 219 effective length of database: 17,147,199,772 effective search space: 3755236750068 effective search space used: 3755236750068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)