ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet52g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, com... 56 5e-05
2gb|AY506486.1| Triticum aestivum PXCW4-like gene, complete sequence 44 0.20
3gb|AY506485.1| Triticum aestivum PXCW3-like gene, complete sequence 44 0.20
4gb|AY506484.1| Triticum aestivum PXCW2-like gene, complete sequence 44 0.20
5emb|X53675.1|TAPEROXIG Wheat (T. aesitvum) mRNA for peroxidase (... 44 0.20
6emb|X85228.1|TAPOX2 T.aestivum pox2 gene 44 0.20
7gb|AF387866.1| Triticum aestivum peroxidase (pxc1A) gene, pxc1A-... 44 0.20
8emb|X56011.1|TAPERO Wheat mRNA for peroxidase 42 0.78
9emb|X58396.1|HVPEROXI Barley mRNA for peroxidase (EC=1.11.1.7) 42 0.78
10gb|AE000659.1|HUAE000659 Homo sapiens T-cell receptor alpha delt... 40 3.1
11ref|NM_001003971.1| Mus musculus SUMO1/sentrin specific peptidas... 40 3.1
12ref|NM_025483.3| Mus musculus SUMO1/sentrin specific peptidase 7... 40 3.1
13gb|BC058593.1| Mus musculus SUMO1/sentrin specific peptidase 7, ... 40 3.1
14gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complet... 40 3.1
15gb|AF429387.1|AF429387 Hevea brasiliensis truncated acetyl Co-A ... 40 3.1
16dbj|AK085060.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful... 40 3.1
17dbj|AK083086.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 40 3.1
18gb|AC154275.2| Mus musculus BAC clone RP24-299G8 from chromosome... 40 3.1
19dbj|AK122542.1| Mus musculus mRNA for mKIAA1707 protein 40 3.1
20ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 40 3.1

>gb|AY857755.1| Triticum monococcum peroxidase 1 (POX1) mRNA, complete cds
          Length = 1259

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 107/130 (82%), Gaps = 5/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 39   taagtaggcttgatggtaatttccccttgcctttgcatgggaaattgataattcgaccgt 98
            |||||||| ||||| |||||| | || |||||||||||| |||| ||  |||||||  ||
Sbjct: 1201 taagtaggattgatagtaatt-ctccatgcctttgcatgagaaagtgggaattcgattgt 1143

                                                                        
Query: 99   tacatg---tgtagatgcacgcatgctttgctggtgcacgtacttaaa-tacacgtttca 154
            |||||    ||| |||||| ||||| ||||||| ||| ||||| |||| ||||| |||||
Sbjct: 1142 tacataatatgtggatgcatgcatgatttgctgctgctcgtacataaactacacatttca 1083

                      
Query: 155  agtgctggta 164
            ||||||||||
Sbjct: 1082 agtgctggta 1073



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>gb|AY506486.1| Triticum aestivum PXCW4-like gene, complete sequence
          Length = 2435

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 59/69 (85%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                        
Query: 18   tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77
            |||||||||| ||||||||||||   ||| ||||| |||| ||| |||||||||||||| 
Sbjct: 2073 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2017

                     
Query: 78   ggaaattga 86
             ||||||||
Sbjct: 2016 agaaattga 2008



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 141  aaatacacgtttcaagtgctggta 164
            ||||||| ||||||||||||||||
Sbjct: 1934 aaatacatgtttcaagtgctggta 1911



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>gb|AY506485.1| Triticum aestivum PXCW3-like gene, complete sequence
          Length = 2466

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 59/69 (85%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                        
Query: 18   tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77
            |||||||||| ||||||||||||   ||| ||||| |||| ||| |||||||||||||| 
Sbjct: 2104 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2048

                     
Query: 78   ggaaattga 86
             ||||||||
Sbjct: 2047 agaaattga 2039



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 141  aaatacacgtttcaagtgctggta 164
            ||||||| ||||||||||||||||
Sbjct: 1965 aaatacatgtttcaagtgctggta 1942



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>gb|AY506484.1| Triticum aestivum PXCW2-like gene, complete sequence
          Length = 2456

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 59/69 (85%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                        
Query: 18   tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77
            |||||||||| ||||||||||||   ||| ||||| |||| ||| |||||||||||||| 
Sbjct: 2095 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2039

                     
Query: 78   ggaaattga 86
             ||||||||
Sbjct: 2038 agaaattga 2030



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 141  aaatacacgtttcaagtgctggta 164
            ||||||| ||||||||||||||||
Sbjct: 1956 aaatacatgtttcaagtgctggta 1933



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>emb|X53675.1|TAPEROXIG Wheat (T. aesitvum) mRNA for peroxidase (EC 1.11.1.7)
          Length = 3240

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 59/69 (85%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                        
Query: 18   tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77
            |||||||||| ||||||||||||   ||| ||||| |||| ||| |||||||||||||| 
Sbjct: 2786 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2730

                     
Query: 78   ggaaattga 86
             ||||||||
Sbjct: 2729 agaaattga 2721



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 141  aaatacacgtttcaagtgctggta 164
            ||||||| ||||||||||||||||
Sbjct: 2647 aaatacatgtttcaagtgctggta 2624



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>emb|X85228.1|TAPOX2 T.aestivum pox2 gene
          Length = 1658

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 60/72 (83%), Gaps = 3/72 (4%)
 Strand = Plus / Minus

                                                                        
Query: 96   cgttacatgtgtagatgcacgcatgctttgctggtgcacgtactt---aaatacacgttt 152
            ||||||||  || |||||| ||||| ||||||| ||||| | |||   ||||||||| ||
Sbjct: 1550 cgttacatacgttgatgcatgcatgatttgctgctgcacatgctttgaaaatacacgatt 1491

                        
Query: 153  caagtgctggta 164
            ||||||||||||
Sbjct: 1490 caagtgctggta 1479



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>gb|AF387866.1| Triticum aestivum peroxidase (pxc1A) gene, pxc1A-2A allele, complete
            cds
          Length = 2458

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 59/69 (85%), Gaps = 3/69 (4%)
 Strand = Plus / Minus

                                                                        
Query: 18   tcttcattccatgtacaagtgtaagtaggcttgatggtaatttccccttgcctttgcatg 77
            |||||||||| ||||||||||||   ||| ||||| |||| ||| |||||||||||||| 
Sbjct: 2098 tcttcattccgtgtacaagtgta--gagggttgatagtaa-ttcaccttgcctttgcatt 2042

                     
Query: 78   ggaaattga 86
             ||||||||
Sbjct: 2041 agaaattga 2033



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 141  aaatacacgtttcaagtgctggta 164
            ||||||| ||||||||||||||||
Sbjct: 1959 aaatacatgtttcaagtgctggta 1936



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>emb|X56011.1|TAPERO Wheat mRNA for peroxidase
          Length = 1247

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 56/65 (86%), Gaps = 2/65 (3%)
 Strand = Plus / Minus

                                                                        
Query: 102  atgtgtagatgcacgcatgctttgctggtgcacgtac-ttaaatacac-gtttcaagtgc 159
            ||||||||||||| ||||| ||||||| | | ||||| | |||||||| |||||||| ||
Sbjct: 1170 atgtgtagatgcatgcatgatttgctgctactcgtacataaaatacacggtttcaagagc 1111

                 
Query: 160  tggta 164
            |||||
Sbjct: 1110 tggta 1106



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>emb|X58396.1|HVPEROXI Barley mRNA for peroxidase (EC=1.11.1.7)
          Length = 1285

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 53/61 (86%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 105  tgtagatgcacgcatgctttgctggtgcacgtacttaaa-tacacgttt-caagtgctgg 162
            |||||||||| ||||| |||||||  || |||||||||| || |||||| ||||||||||
Sbjct: 1163 tgtagatgcatgcatgatttgctgccgctcgtacttaaaatagacgttttcaagtgctgg 1104

             
Query: 163  t 163
            |
Sbjct: 1103 t 1103



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>gb|AE000659.1|HUAE000659 Homo sapiens T-cell receptor alpha delta locus from bases 250472 to
              501670 (section 2 of 5) of the Complete Nucleotide Sequence
          Length = 251199

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     gggaaattgataattcgacc 96
              ||||||||||||||||||||
Sbjct: 129606 gggaaattgataattcgacc 129587



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>ref|NM_001003971.1| Mus musculus SUMO1/sentrin specific peptidase 7 (Senp7), transcript
            variant 2, mRNA
          Length = 4802

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   gtgtaagtaggcttgatggt 55
            ||||||||||||||||||||
Sbjct: 2151 gtgtaagtaggcttgatggt 2132



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>ref|NM_025483.3| Mus musculus SUMO1/sentrin specific peptidase 7 (Senp7), transcript
            variant 1, mRNA
          Length = 4883

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   gtgtaagtaggcttgatggt 55
            ||||||||||||||||||||
Sbjct: 2232 gtgtaagtaggcttgatggt 2213



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>gb|BC058593.1| Mus musculus SUMO1/sentrin specific peptidase 7, transcript variant
            1, mRNA (cDNA clone MGC:67838 IMAGE:5364345), complete
            cds
          Length = 4788

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   gtgtaagtaggcttgatggt 55
            ||||||||||||||||||||
Sbjct: 2120 gtgtaagtaggcttgatggt 2101



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>gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complete sequence
          Length = 138604

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    atactgatttgtattgacca 185
              ||||||||||||||||||||
Sbjct: 109299 atactgatttgtattgacca 109318



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>gb|AF429387.1|AF429387 Hevea brasiliensis truncated acetyl Co-A acetyltransferase-like
           protein mRNA, complete cds
          Length = 960

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  tgcctttgcatgggaaattg 85
           ||||||||||||||||||||
Sbjct: 642 tgcctttgcatgggaaattg 661



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>dbj|AK085060.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430031L19 product:similar to SUMO-1
            SPECIFIC PROTEASE 2 [Homo sapiens], full insert sequence
          Length = 3695

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   gtgtaagtaggcttgatggt 55
            ||||||||||||||||||||
Sbjct: 2177 gtgtaagtaggcttgatggt 2158



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>dbj|AK083086.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:C530049J22 product:similar to
            SUMO-1 SPECIFIC PROTEASE 2 [Homo sapiens], full insert
            sequence
          Length = 3683

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   gtgtaagtaggcttgatggt 55
            ||||||||||||||||||||
Sbjct: 2163 gtgtaagtaggcttgatggt 2144



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>gb|AC154275.2| Mus musculus BAC clone RP24-299G8 from chromosome 16, complete sequence
          Length = 183487

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    gtgtaagtaggcttgatggt 55
             ||||||||||||||||||||
Sbjct: 96818 gtgtaagtaggcttgatggt 96799



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>dbj|AK122542.1| Mus musculus mRNA for mKIAA1707 protein
          Length = 4823

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   gtgtaagtaggcttgatggt 55
            ||||||||||||||||||||
Sbjct: 2173 gtgtaagtaggcttgatggt 2154



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>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     gggaaattgataattcgacc 96
              ||||||||||||||||||||
Sbjct: 380077 gggaaattgataattcgacc 380058


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,986,636
Number of Sequences: 3902068
Number of extensions: 1986636
Number of successful extensions: 34676
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 34633
Number of HSP's gapped (non-prelim): 40
length of query: 241
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 219
effective length of database: 17,147,199,772
effective search space: 3755236750068
effective search space used: 3755236750068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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