ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet52e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete se... 42 0.89
2gb|AC092803.2| Homo sapiens chromosome 1 clone RP11-61J19, compl... 40 3.5
3gb|AC025763.5| Homo sapiens chromosome 16 clone CTB-186A5, compl... 40 3.5
4gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, compl... 40 3.5
5gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone ... 40 3.5
6emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chr... 40 3.5

>gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete sequence
          Length = 164963

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 154   atactttgaattctcattaca 174
             |||||||||||||||||||||
Sbjct: 69909 atactttgaattctcattaca 69929



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>gb|AC092803.2| Homo sapiens chromosome 1 clone RP11-61J19, complete sequence
          Length = 188345

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    agtcacttgacagggcaatg 239
              ||||||||||||||||||||
Sbjct: 137319 agtcacttgacagggcaatg 137338



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>gb|AC025763.5| Homo sapiens chromosome 16 clone CTB-186A5, complete sequence
          Length = 194690

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     gagtattacagatgcacagc 42
              ||||||||||||||||||||
Sbjct: 122737 gagtattacagatgcacagc 122756



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>gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, complete sequence
          Length = 201243

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   atactttgaattctcattacaaag 177
             |||||||||||||||||| |||||
Sbjct: 22226 atactttgaattctcatttcaaag 22203



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>gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone rp23-304j8, complete
              sequence
          Length = 163774

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    attacaaagaattgatcatc 188
              ||||||||||||||||||||
Sbjct: 121213 attacaaagaattgatcatc 121194



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>emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chromosome 2, complete
              sequence
          Length = 221534

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    attacaaagaattgatcatc 188
              ||||||||||||||||||||
Sbjct: 206752 attacaaagaattgatcatc 206733


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,424,984
Number of Sequences: 3902068
Number of extensions: 1424984
Number of successful extensions: 27284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27276
Number of HSP's gapped (non-prelim): 8
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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