ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet52d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
2dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
3dbj|AK067180.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 2e-13
4dbj|AK108359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 1e-11
5dbj|AK071569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
6dbj|AK070294.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 8e-07
7ref|XM_446867.1| Candida glabrata CBS138, CAGL0H01573g partial mRNA 44 0.18
8emb|CR380954.1| Candida glabrata strain CBS138 chromosome H comp... 44 0.18
9gb|AY769950.1| Homo sapiens coagulation factor VIII, procoagulan... 42 0.71
10ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8... 42 0.71
11gb|CP000114.1| Streptococcus agalactiae A909, complete genome 42 0.71
12emb|BX842564.3| Human DNA sequence from clone CTD-2037E7 on chro... 42 0.71
13gb|AE014234.1| Streptococcus agalactiae 2603V/R section 44 of 10... 42 0.71
14emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet... 42 0.71
15gb|AC163771.5| Pan troglodytes BAC clone CH251-57G17 from chromo... 42 0.71
16emb|AL645722.2|HSA524G17 Homo sapiens chromosome X clone RP11-52... 42 0.71
17gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 0.71
18ref|XM_476182.1| Oryza sativa (japonica cultivar-group), predic... 40 2.8
19ref|XM_476171.1| Oryza sativa (japonica cultivar-group), predic... 40 2.8
20ref|XM_476170.1| Oryza sativa (japonica cultivar-group), predic... 40 2.8
21gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
22ref|XM_424700.1| PREDICTED: Gallus gallus similar to COUP transc... 40 2.8
23gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
24gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.8
25emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chr... 40 2.8
26gb|AE011665.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 2.8
27gb|AF499777.1| Xanthomonas axonopodis pv. glycines strain 8ra hr... 40 2.8
28dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 2.8
29gb|DQ286698.1| Xanthomonas campestris pv. vignicola strain 81-30... 40 2.8
30gb|DQ286697.1| Xanthomonas smithii subsp. citri strain 50E HrpE ... 40 2.8
31gb|DQ286696.1| Xanthomonas smithii subsp. smithii strain G34 Hrp... 40 2.8
32gb|DQ286695.1| Xanthomonas campestris pv. begoniae strain 077-33... 40 2.8
33gb|DQ286694.1| Xanthomonas campestris pv. vesicatoria strain 56 ... 40 2.8
34gb|DQ286693.1| Xanthomonas campestris pv. glycines strain 202 Hr... 40 2.8
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
36dbj|AK109427.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
37dbj|AK109415.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
38dbj|AK119543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
39dbj|AK105947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
40dbj|AK104940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
41dbj|AK104575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
42dbj|AK104531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
43dbj|AK104485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
44dbj|AK104369.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
45dbj|AK104285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
46dbj|AK104258.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
47dbj|AK104216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
48dbj|AK104178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
49dbj|AK104171.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
50dbj|AK103934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
51dbj|AK061473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
52dbj|AK060149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
53dbj|AK060134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
54dbj|AK059729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                            
Query: 157      acgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgaggaagaacacg 216
                |||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| |||
Sbjct: 17363667 acgacgcggtccatgagctgcttggccttgtcgcactccggcttctccaggaagaagacg 17363608

                  
Query: 217      tg 218
                ||
Sbjct: 17363607 tg 17363606



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                            
Query: 148      atgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgagg 207
                ||||| || ||||||||||||||||||| |||||| ||| ||||| | |||||||| |||
Sbjct: 17373774 atgaacgccacgacgcggtccatgagctccttggccttggcgcactccggcttctccagg 17373715

                           
Query: 208      aagaacacgtg 218
                |||||||||||
Sbjct: 17373714 aagaacacgtg 17373704



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                   
Query: 144      ggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 194
                ||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 17370864 ggctatgaacgccacgacgcggtccatgagctgcttggccttgtcgcaccc 17370814



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 142      ccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 194
                |||| |||||| || ||||||||||||| |||||||||||| |||||||||||
Sbjct: 17367490 ccggatatgaacgccacgacgcggtccaagagctgcttggccttgtcgcaccc 17367438



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                            
Query: 140      caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggct 199
                ||||||||||||| || |||| ||| ||||||||||||||||| || |||||| | |  |
Sbjct: 17360617 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcactccgaat 17360558

                                   
Query: 200      tctcgaggaagaacacgtg 218
                || | ||||||||||||||
Sbjct: 17360557 tccccaggaagaacacgtg 17360539
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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0054F02
          Length = 180651

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                         
Query: 157   acgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgaggaagaacacg 216
             |||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| |||
Sbjct: 87580 acgacgcggtccatgagctgcttggccttgtcgcactccggcttctccaggaagaagacg 87521

               
Query: 217   tg 218
             ||
Sbjct: 87520 tg 87519



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                         
Query: 148   atgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgagg 207
             ||||| || ||||||||||||||||||| |||||| ||| ||||| | |||||||| |||
Sbjct: 97687 atgaacgccacgacgcggtccatgagctccttggccttggcgcactccggcttctccagg 97628

                        
Query: 208   aagaacacgtg 218
             |||||||||||
Sbjct: 97627 aagaacacgtg 97617



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                
Query: 144   ggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 194
             ||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 94777 ggctatgaacgccacgacgcggtccatgagctgcttggccttgtcgcaccc 94727



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 142   ccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 194
             |||| |||||| || ||||||||||||| |||||||||||| |||||||||||
Sbjct: 91403 ccggatatgaacgccacgacgcggtccaagagctgcttggccttgtcgcaccc 91351



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                         
Query: 140   caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggct 199
             ||||||||||||| || |||| ||| ||||||||||||||||| || |||||| | |  |
Sbjct: 84530 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcactccgaat 84471

                                
Query: 200   tctcgaggaagaacacgtg 218
             || | ||||||||||||||
Sbjct: 84470 tccccaggaagaacacgtg 84452
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>dbj|AK067180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M19, full
           insert sequence
          Length = 1117

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                       
Query: 157 acgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgaggaagaacacg 216
           |||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| |||
Sbjct: 979 acgacgcggtccatgagctgcttggccttgtcgcactccggcttctccaggaagaagacg 920

             
Query: 217 tg 218
           ||
Sbjct: 919 tg 918
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>dbj|AK108359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C08, full
           insert sequence
          Length = 1059

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                              
Query: 144 ggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcaccc 194
           ||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct: 952 ggctatgaacgccacgacgcggtccatgagctgcttggccttgtcgcaccc 902
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>dbj|AK071569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102G04, full
            insert sequence
          Length = 1519

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                        
Query: 140  caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggct 199
            ||||||||||||| || |||| ||| ||||||||||||||||| || |||||| | |  |
Sbjct: 1183 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcactccgaat 1124

                               
Query: 200  tctcgaggaagaacacgtg 218
            || | ||||||||||||||
Sbjct: 1123 tccccaggaagaacacgtg 1105
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>dbj|AK070294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050O07, full
            insert sequence
          Length = 1333

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                        
Query: 140  caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggct 199
            ||||||||||||| || |||| ||| ||||||||||||||||| || |||||| | |  |
Sbjct: 1180 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcactccgaat 1121

                               
Query: 200  tctcgaggaagaacacgtg 218
            || | ||||||||||||||
Sbjct: 1120 tccccaggaagaacacgtg 1102
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>ref|XM_446867.1| Candida glabrata CBS138, CAGL0H01573g partial mRNA
          Length = 1080

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 74  cagtgatgcagagcaggttcct 95
           ||||||||||||||||||||||
Sbjct: 288 cagtgatgcagagcaggttcct 309
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>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence
          Length = 1050361

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 74     cagtgatgcagagcaggttcct 95
              ||||||||||||||||||||||
Sbjct: 153827 cagtgatgcagagcaggttcct 153806
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>gb|AY769950.1| Homo sapiens coagulation factor VIII, procoagulant component
             (hemophilia A) (F8) gene, complete cds
          Length = 192029

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tcacctatttattcacaaata 36
             |||||||||||||||||||||
Sbjct: 31914 tcacctatttattcacaaata 31894
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>ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8@) on chromosome X
          Length = 652898

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     tcacctatttattcacaaata 36
              |||||||||||||||||||||
Sbjct: 158629 tcacctatttattcacaaata 158649
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 15      atcacctatttattcacaaat 35
               |||||||||||||||||||||
Sbjct: 1002892 atcacctatttattcacaaat 1002872
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>emb|BX842564.3| Human DNA sequence from clone CTD-2037E7 on chromosome X Contains part
             of the F8 gene for coagulation factor VIII, procoagulant
             component (hemophilia A), complete sequence
          Length = 71989

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    tcacctatttattcacaaata 36
             |||||||||||||||||||||
Sbjct: 45724 tcacctatttattcacaaata 45744
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>gb|AE014234.1| Streptococcus agalactiae 2603V/R section 44 of 100 of the complete
             genome
          Length = 20692

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    atcacctatttattcacaaat 35
             |||||||||||||||||||||
Sbjct: 13796 atcacctatttattcacaaat 13776
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>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6
          Length = 233050

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    atcacctatttattcacaaat 35
             |||||||||||||||||||||
Sbjct: 16354 atcacctatttattcacaaat 16334
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>gb|AC163771.5| Pan troglodytes BAC clone CH251-57G17 from chromosome unknown,
           complete sequence
          Length = 179603

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 16  tcacctatttattcacaaata 36
           |||||||||||||||||||||
Sbjct: 929 tcacctatttattcacaaata 909
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>emb|AL645722.2|HSA524G17 Homo sapiens chromosome X clone RP11-524G17 map Xq28, complete sequence
          Length = 189940

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    tcacctatttattcacaaata 36
             |||||||||||||||||||||
Sbjct: 48232 tcacctatttattcacaaata 48212
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    cggtccatgagctgcttggcg 183
              |||||||||||||||||||||
Sbjct: 965041 cggtccatgagctgcttggcg 965021
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>ref|XM_476182.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 780

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 207 cttctcgaggaagaacacgt 188
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>ref|XM_476171.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 720

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 96  cttctcgaggaagaacacgt 77
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>ref|XM_476170.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 813

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 207 cttctcgaggaagaacacgt 188
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>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0012L23, complete sequence
          Length = 121659

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   cttctcgaggaagaacacgt 217
             ||||||||||||||||||||
Sbjct: 25631 cttctcgaggaagaacacgt 25612
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>ref|XM_424700.1| PREDICTED: Gallus gallus similar to COUP transcription factor 1
           (LOC427108), mRNA
          Length = 937

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 atgaaggcgacgacgcggtc 167
           ||||||||||||||||||||
Sbjct: 509 atgaaggcgacgacgcggtc 490
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>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15,
              complete sequence
          Length = 184316

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    cttctcgaggaagaacacgt 217
              ||||||||||||||||||||
Sbjct: 177587 cttctcgaggaagaacacgt 177606



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    cttctcgaggaagaacacgt 217
              ||||||||||||||||||||
Sbjct: 175086 cttctcgaggaagaacacgt 175105
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>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
              complete sequence
          Length = 148348

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    cttctcgaggaagaacacgt 217
              ||||||||||||||||||||
Sbjct: 120466 cttctcgaggaagaacacgt 120447



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  cttctcgaggaagaacacgt 217
            ||||||||||||||||||||
Sbjct: 7513 cttctcgaggaagaacacgt 7532



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  cttctcgaggaagaacacgt 217
            ||||||||||||||||||||
Sbjct: 5012 cttctcgaggaagaacacgt 5031
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>emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chromosome 9, complete
             sequence
          Length = 51132

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    acatcacctatttattcacaaata 36
             ||||||||||| ||||||||||||
Sbjct: 32165 acatcacctatatattcacaaata 32188
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>gb|AE011665.1| Xanthomonas axonopodis pv. citri str. 306,  section 43 of 469 of the
            complete genome
          Length = 10257

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  gagctgcttggcgttgtcgc 190
            ||||||||||||||||||||
Sbjct: 9919 gagctgcttggcgttgtcgc 9938
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>gb|AF499777.1| Xanthomonas axonopodis pv. glycines strain 8ra hrp pathogenicity
             island, complete sequence
          Length = 29206

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gagctgcttggcgttgtcgc 190
             ||||||||||||||||||||
Sbjct: 20787 gagctgcttggcgttgtcgc 20768
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    ggcgacgacgcggtccatga 172
              ||||||||||||||||||||
Sbjct: 661020 ggcgacgacgcggtccatga 661001
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>gb|DQ286698.1| Xanthomonas campestris pv. vignicola strain 81-30 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 gagctgcttggcgttgtcgc 190
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286697.1| Xanthomonas smithii subsp. citri strain 50E HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 gagctgcttggcgttgtcgc 190
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286696.1| Xanthomonas smithii subsp. smithii strain G34 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 gagctgcttggcgttgtcgc 190
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286695.1| Xanthomonas campestris pv. begoniae strain 077-3382 HrpE (hrpE)
           gene, complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 gagctgcttggcgttgtcgc 190
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286694.1| Xanthomonas campestris pv. vesicatoria strain 56 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 gagctgcttggcgttgtcgc 190
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>gb|DQ286693.1| Xanthomonas campestris pv. glycines strain 202 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 gagctgcttggcgttgtcgc 190
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     cttctcgaggaagaacacgt 217
               ||||||||||||||||||||
Sbjct: 7165617 cttctcgaggaagaacacgt 7165598



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     cttctcgaggaagaacacgt 217
               ||||||||||||||||||||
Sbjct: 7052664 cttctcgaggaagaacacgt 7052683



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     cttctcgaggaagaacacgt 217
               ||||||||||||||||||||
Sbjct: 7050163 cttctcgaggaagaacacgt 7050182
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>dbj|AK109427.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C03, full
           insert sequence
          Length = 1053

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 274 cttctcgaggaagaacacgt 255
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>dbj|AK109415.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-E02, full
           insert sequence
          Length = 1114

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK119543.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F03, full
           insert sequence
          Length = 1131

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK105947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C07, full
           insert sequence
          Length = 1111

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 272 cttctcgaggaagaacacgt 253
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>dbj|AK104940.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G01, full
           insert sequence
          Length = 999

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK104575.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A02, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK104531.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A12, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK104485.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-H12, full
           insert sequence
          Length = 981

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK104369.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E05, full
           insert sequence
          Length = 1115

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK104285.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D05, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK104258.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G02, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK104216.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B03, full
           insert sequence
          Length = 1109

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK104178.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-E06, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK104171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B01, full
           insert sequence
          Length = 1012

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK103934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F06, full
           insert sequence
          Length = 1035

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK061473.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E12, full
           insert sequence
          Length = 1088

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 274 cttctcgaggaagaacacgt 255
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>dbj|AK060149.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D03, full
           insert sequence
          Length = 1056

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK060134.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D04, full
           insert sequence
          Length = 1131

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
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>dbj|AK059729.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-E08, full
           insert sequence
          Length = 1336

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 198 cttctcgaggaagaacacgt 217
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,538,968
Number of Sequences: 3902068
Number of extensions: 1538968
Number of successful extensions: 103930
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103621
Number of HSP's gapped (non-prelim): 305
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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