ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet52c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 105 7e-20
2emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene 98 2e-17
3gb|DQ201146.1| Hordeum vulgare subsp. vulgare cultivar Kompolti ... 94 3e-16
4gb|DQ238106.1| Hordeum vulgare subsp. vulgare cv. Morex phytochr... 94 3e-16
5gb|DQ201145.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo p... 94 3e-16
6emb|AJ400714.1|TAE400714 Triticum aestivum vp1D gene for VIVIPAR... 90 4e-15
7emb|AJ234485.1|HVU234485 Hordeum vulgare genomic DNA fragment; c... 88 2e-14
8gb|AY133251.1|AY133250S2 Hordeum vulgare subsp. vulgare starch s... 86 7e-14
9emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box prote... 80 4e-12
10gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-l... 80 4e-12
11gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-l... 80 4e-12
12gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 76 7e-11
13emb|AJ234583.1|HVU234583 Hordeum vulgare genomic DNA fragment; c... 72 1e-09
14gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 68 2e-08
15gb|DQ175992.1| Hordeum vulgare subsp. vulgare clone 65-22A-RB fl... 68 2e-08
16emb|X64560.1|HVHSP17A H.vulgare hsp17 gene for 17 kd heat shock ... 68 2e-08
17gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-lik... 64 2e-07
18emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin 60 4e-06
19gb|AY821694.1| Crithopsis delileana beta amylase gene, partial c... 58 2e-05
20gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 compl... 54 2e-04
21gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 54 2e-04
22gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex sub... 50 0.004
23gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 50 0.004
24dbj|AB183299.1| Triticum aestivum WHLP gene for ribosomal L14 pr... 48 0.015
25gb|U29095.1|U29095 Triticum aestivum serine-threonine protein ki... 46 0.058
26gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa... 42 0.91
27gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.91
28gb|AY210802.1| Danio rerio nuclear receptor coactivator (tif2) g... 42 0.91
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
30dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
33dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
34dbj|AP005656.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
35dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
36dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
37emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 ... 42 0.91
38emb|AL669901.26| Mouse DNA sequence from clone RP23-35N5 on chro... 42 0.91
39gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 3.6
40ref|XM_632758.1| Dictyostelium discoideum hypothetical protein (... 40 3.6
41gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 40 3.6
42gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
43gb|AY544779.1| Leccinum talamancae 18S ribosomal RNA gene, parti... 40 3.6
44gb|AC122316.3| Mus musculus BAC clone RP23-303G23 from 1, comple... 40 3.6
45ref|XM_644990.1| Entamoeba histolytica HM-1:IMSS leucine rich re... 40 3.6
46gb|AC115734.9| Mus musculus, clone RP23-466K3, complete sequence 40 3.6
47emb|AL161454.10| Human DNA sequence from clone RP11-72B4 on chro... 40 3.6
48gb|AC099727.13| Mus musculus chromosome 1, clone RP23-353O3, com... 40 3.6
49dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
50dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
51dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
52dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
53dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
54gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 40 3.6
55dbj|AP004794.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
56dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
57dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
58dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
59dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
60dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
61dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
62dbj|AK101891.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
63gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
64gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
65emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005... 40 3.6
66emb|AL691424.7| Mouse DNA sequence from clone RP23-219K12 on chr... 40 3.6
67gb|AC159470.17| Mus musculus 10 BAC RP24-462C5 (Roswell Park Can... 40 3.6
68gb|AC167231.12| Mus musculus BAC RP23-416P12 (Roswell Park Canc... 40 3.6 
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score =  105 bits (53), Expect = 7e-20
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                         
Query: 24    ctccgtcccaaaataactgtctcaagcttagtacaattttctactagagctagtataaag 83
             ||||||||||||||||||||||||||| |||||||| ||| ||||||| |||||| ||||
Sbjct: 50487 ctccgtcccaaaataactgtctcaagcctagtacaactttgtactagaactagtacaaag 50428

                              
Query: 84    ttgagatacttattttg 100
             |||||| ||||||||||
Sbjct: 50427 ttgagacacttattttg 50411
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>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene
          Length = 10815

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                        
Query: 32   caaaataactgtctcaagcttagtacaattttctactagagctagtataaagttgagata 91
            |||||||||||||||||||||||||||| ||| || ||||||||||| |||||||||| |
Sbjct: 7283 caaaataactgtctcaagcttagtacaactttgtagtagagctagtacaaagttgagaca 7224

                     
Query: 92   cttattttg 100
            |||||||||
Sbjct: 7223 cttattttg 7215
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>gb|DQ201146.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai phytochrome C
            (PhyC) gene, complete cds
          Length = 4914

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 24   ctccgtcccaaaataactgtctcaagcttagtacaattttctactagagctagtataaag 83
            |||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||| 
Sbjct: 4038 ctccgtcccaaaataagtgtctcaagctgagtacaattttgtaatagagctagtacaaaa 3979

                           
Query: 84   ttgagatacttattt 98
            |||||| ||||||||
Sbjct: 3978 ttgagacacttattt 3964



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 12   aaattatacactctccgtcccaaaataact 41
            ||||||||| | ||||||||||||||||||
Sbjct: 3934 aaattatactccctccgtcccaaaataact 3963
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>gb|DQ238106.1| Hordeum vulgare subsp. vulgare cv. Morex phytochrome C (PhyC) gene,
            complete cds
          Length = 4938

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 24   ctccgtcccaaaataactgtctcaagcttagtacaattttctactagagctagtataaag 83
            |||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||| 
Sbjct: 4038 ctccgtcccaaaataagtgtctcaagctgagtacaattttgtaatagagctagtacaaaa 3979

                           
Query: 84   ttgagatacttattt 98
            |||||| ||||||||
Sbjct: 3978 ttgagacacttattt 3964



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 12   aaattatacactctccgtcccaaaataact 41
            ||||||||| | ||||||||||||||||||
Sbjct: 3934 aaattatactccctccgtcccaaaataact 3963
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>gb|DQ201145.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo phytochrome C (PhyC)
            gene, complete cds
          Length = 4914

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 68/75 (90%)
 Strand = Plus / Minus

                                                                        
Query: 24   ctccgtcccaaaataactgtctcaagcttagtacaattttctactagagctagtataaag 83
            |||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||| 
Sbjct: 4038 ctccgtcccaaaataagtgtctcaagctgagtacaattttgtaatagagctagtacaaaa 3979

                           
Query: 84   ttgagatacttattt 98
            |||||| ||||||||
Sbjct: 3978 ttgagacacttattt 3964



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 12   aaattatacactctccgtcccaaaataact 41
            ||||||||| | ||||||||||||||||||
Sbjct: 3934 aaattatactccctccgtcccaaaataact 3963
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>emb|AJ400714.1|TAE400714 Triticum aestivum vp1D gene for VIVIPAROUS1, exons 1-6
          Length = 4230

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                        
Query: 24   ctccgtcccaaaataactgtctcaagcttagtacaattttctactagagctagtataaag 83
            |||||||||||||||| |||||||| |||||||||| ||| |||||||| |||| |||| 
Sbjct: 3757 ctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagagttagtgtaaaa 3698

                             
Query: 84   ttgagatacttattttg 100
            |||||| ||||||||||
Sbjct: 3697 ttgagacacttattttg 3681



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 25   tccgtcccaaaataactgtctcaa 48
            ||||||||||||||| ||||||||
Sbjct: 3674 tccgtcccaaaataagtgtctcaa 3697
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>emb|AJ234485.1|HVU234485 Hordeum vulgare genomic DNA fragment; clone MWG0526.rev
          Length = 379

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                       
Query: 24  ctccgtcccaaaataactgtctcaagcttagtacaattttctactagagctagtataaag 83
           ||||||| |||||||| ||||| || |||||||||||||| |||||||||||||| || |
Sbjct: 124 ctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctagtacaatg 183

                               
Query: 84  ttgagatacttattttgaga 103
           |||||| | |||||||||||
Sbjct: 184 ttgagacagttattttgaga 203
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>gb|AY133251.1|AY133250S2 Hordeum vulgare subsp. vulgare starch synthase II gene, exon 9 and
           complete cds
          Length = 3856

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                       
Query: 14  attatacactctccgtcccaaaataactgtctcaagcttagtacaattttctactagagc 73
           ||||||| | |||||| ||||||||| |||||  ||| |||||||||||| |||||||||
Sbjct: 901 attatactccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagc 960

                                      
Query: 74  tagtataaagttgagatacttattttg 100
           ||||| |||||||||| | ||||||||
Sbjct: 961 tagtacaaagttgagacagttattttg 987



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 24  ctccgtcccaaaataactgtctcaa 48
           |||||||||||||||||||||||||
Sbjct: 995 ctccgtcccaaaataactgtctcaa 971
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>emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box protein (m1 gene)
          Length = 1086

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 28   gtcccaaaataactgtctcaagcttagtacaattttctactagagctagtataaagttga 87
            |||| ||||||| ||||| ||||||||||||| ||| ||||||||||| || ||||||||
Sbjct: 1000 gtcctaaaataagtgtcttaagcttagtacaactttgtactagagctaatacaaagttga 941

                            
Query: 88   gatacttattttgaga 103
            || | |||||||||||
Sbjct: 940  gacagttattttgaga 925



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 15  ttatacactctccgtcccaaaataactgtctcaa 48
           |||||| | ||||||| |||||||||||||||||
Sbjct: 911 ttatactccctccgtctcaaaataactgtctcaa 944
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>gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-like kinase gene,
            complete cds
          Length = 2513

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 33   aaaataactgtctcaagcttagtacaattttctactagagctagtataaagttgagatac 92
            ||||||| ||||| ||||||| ||||||||| |||||||||||||| |||||||||| | 
Sbjct: 1391 aaaataagtgtcttaagcttaatacaattttatactagagctagtacaaagttgagacaa 1332

                    
Query: 93   ttattttg 100
            ||||||||
Sbjct: 1331 ttattttg 1324



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 24   ctccgtcccaaaataactgtctcaa 48
            |||||||||||||||| ||||||||
Sbjct: 1316 ctccgtcccaaaataattgtctcaa 1340
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>gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-like kinase gene,
            complete cds
          Length = 2550

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 33   aaaataactgtctcaagcttagtacaattttctactagagctagtataaagttgagatac 92
            ||||||| ||||| ||||||| ||||||||| |||||||||||||| |||||||||| | 
Sbjct: 1416 aaaataagtgtcttaagcttaatacaattttatactagagctagtacaaagttgagacaa 1357

                    
Query: 93   ttattttg 100
            ||||||||
Sbjct: 1356 ttattttg 1349



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 24   ctccgtcccaaaataactgtctcaa 48
            |||||||||||||||| ||||||||
Sbjct: 1341 ctccgtcccaaaataattgtctcaa 1365
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                          
Query: 32     caaaataactgtctcaagcttagtacaattttctactagagctagtataaagttgagata 91
              |||||||| ||| ||| ||||||||||| ||| |||||||||||||| |||||||||| |
Sbjct: 206104 caaaataattgtttcatgcttagtacaactttgtactagagctagtacaaagttgagaca 206045

                        
Query: 92     cttattttga 101
               |||||||||
Sbjct: 206044 tttattttga 206035



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 12    aaattatacactctccgtcccaaaataactgtctcaa 48
             ||||||||| | |||||||||||||||| || |||||
Sbjct: 81472 aaattatactccctccgtcccaaaataagtgactcaa 81508
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>emb|AJ234583.1|HVU234583 Hordeum vulgare genomic DNA fragment; clone MWG0838.uni
          Length = 263

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 70/80 (87%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                       
Query: 24  ctccgtcccaaaataactgtctcaagcttagtacaattttctactagagctagtataaag 83
           ||||||| |||||||| |||||||||||||||| || |||  |||| |||||||||||| 
Sbjct: 250 ctccgtctcaaaataattgtctcaagcttagtataactttgcacta-agctagtataaaa 192

                               
Query: 84  ttgagatacttattttgaga 103
           || ||| |||||||||||||
Sbjct: 191 ttaagaaacttattttgaga 172
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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 68/78 (87%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                         
Query: 24    ctccgtcccaaaataactgtctcaagcttagtacaat-tttctactagagctagtataaa 82
             ||||||| |||||||||||||| ||| ||| |||||  ||| |||||||||||||| |||
Sbjct: 31433 ctccgtctcaaaataactgtcttaaggttaatacaaaatttgtactagagctagtacaaa 31492

                               
Query: 83    gttgagatacttattttg 100
             || |||| ||||||||||
Sbjct: 31493 gtggagacacttattttg 31510



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 18    tacactctccgtcccaaaataactgtctc 46
             |||||||||||||||||||||| ||||||
Sbjct: 31524 tacactctccgtcccaaaataagtgtctc 31496
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>gb|DQ175992.1| Hordeum vulgare subsp. vulgare clone 65-22A-RB flanking T-DNA
           insertion sequence
          Length = 267

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 15  ttatacactctccgtcccaaaataactgtctcaagcttagtacaattttctactagagct 74
           |||||| ||||||||   ||||||| ||||| |||||||||| |||||| ||||||||||
Sbjct: 51  ttatactctctccgttttaaaataagtgtcttaagcttagtataattttatactagagct 110

                                     
Query: 75  agtataaagttgagatacttattttg 100
           || | |||||| ||| | ||||||||
Sbjct: 111 agaacaaagttaagacaattattttg 136
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>emb|X64560.1|HVHSP17A H.vulgare hsp17 gene for 17 kd heat shock protein
          Length = 1515

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 34  aaataactgtctcaagcttagtacaattttctactagagctagtataaagttgagatact 93
           |||||| ||||||||| ||||||||||||| || || || |||||||||||| ||| |||
Sbjct: 211 aaataaatgtctcaagtttagtacaattttatattaaagttagtataaagttcagacact 152

                 
Query: 94  tatttt 99
           ||||||
Sbjct: 151 tatttt 146
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>gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-like kinase gene,
            complete cds
          Length = 4643

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 60/68 (88%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                        
Query: 33   aaaataactgtctcaagcttagtacaattttctactagagctagtataaagttgagatac 92
            ||||||| ||||| ||||||| ||||||||  |||||||||||||| |||||||||| | 
Sbjct: 2116 aaaataagtgtcttaagcttaatacaattta-tactagagctagtacaaagttgagacaa 2058

                    
Query: 93   ttattttg 100
            ||||||||
Sbjct: 2057 ttattttg 2050



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 24   ctccgtcccaaaataactgtctcaa 48
            |||||||||||||||| ||||||||
Sbjct: 2042 ctccgtcccaaaataattgtctcaa 2066
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>emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin
          Length = 1884

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 49/54 (90%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 47   aagcttagtacaattttctactagagctagtataaagttgagatacttattttg 100
            ||||||||||||||||| ||||| | |||||| |||||||||| ||||||||||
Sbjct: 1884 aagcttagtacaattttatacta-aactagtacaaagttgagacacttattttg 1832
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>gb|AY821694.1| Crithopsis delileana beta amylase gene, partial cds; and Stowaway
            MITE, complete sequence
          Length = 1521

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 48   agcttagtacaattttctactagagctagtataaagttgagatacttattttg 100
            |||||||||||| ||| ||||| || ||||| |||||||||| ||||||||||
Sbjct: 1267 agcttagtacaactttgtactaaagttagtacaaagttgagacacttattttg 1215
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>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence
          Length = 168746

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 15    ttatacactctccgtcccaaaataactgtctcaag 49
             |||||| | ||||||||||||||||||||||||||
Sbjct: 78754 ttatactccctccgtcccaaaataactgtctcaag 78720



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                         
Query: 27    cgtcccaaaataactgtctcaagcttagtacaattttctactagagctagtataaagttg 86
             ||||||||||||| |||||||| |||||||||| |||  |||| |  ||||| |||||||
Sbjct: 78616 cgtcccaaaataagtgtctcaaccttagtacaactttgcactaaatttagtacaaagttg 78675

                
Query: 87    aga 89
             |||
Sbjct: 78676 aga 78678
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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 30   cccaaaataactgtctcaagcttagtacaattttctactagagctagtataaagt 84
            |||||||||| ||||| || |||| ||||| ||| |||||||| |||||||||||
Sbjct: 8348 cccaaaataaatgtcttaaacttaatacaactttatactagagttagtataaagt 8294



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 32   caaaataactgtctcaagcttagtacaatttt 63
            |||||||| | ||||||||||| |||||||||
Sbjct: 5056 caaaataagtatctcaagcttaatacaatttt 5025
to top
>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098 cyclic
            nucleotide-gated ion channel 4 (Nec1) gene, complete cds
          Length = 9090

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                         
Query: 24   ctccgtcccaaaataactgtctcaagcttagtacaattttctact 68
            |||||||||||||||| ||||| ||||||| ||||| ||| ||||
Sbjct: 8644 ctccgtcccaaaataagtgtcttaagcttaatacaactttatact 8688
to top
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 24    ctccgtcccaaaataactgtctcaa 48
             |||||||||||||||||||||||||
Sbjct: 62354 ctccgtcccaaaataactgtctcaa 62330
to top
>dbj|AB183299.1| Triticum aestivum WHLP gene for ribosomal L14 protein, complete cds
          Length = 1691

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 24  ctccgtcccaaaataactgtctcaagcttagtacaa 59
           |||||||||||||||| |||||||| ||||||||||
Sbjct: 394 ctccgtcccaaaataagtgtctcaa-cttagtacaa 360



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 24  ctccgtcccaaaataactgtctcaagcttagtacaattttctacta 69
           |||||||||||||||| ||||||||  |||||| || ||| |||||
Sbjct: 322 ctccgtcccaaaataagtgtctcaactttagtataactttgtacta 367
to top
>gb|U29095.1|U29095 Triticum aestivum serine-threonine protein kinase (TaPK3) gene,
           exons 3 through 9 and complete cds
          Length = 2250

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 76/90 (84%), Gaps = 4/90 (4%)
 Strand = Plus / Minus

                                                                       
Query: 14  attatacactctccgtcccaaaataactgtctcaagcttagtac-aattttctactagag 72
           ||||||| | ||||||||| |||||| || ||||| ||| |||| |||||| ||||| | 
Sbjct: 439 attatactccctccgtcccgaaataagtgactcaa-ctttgtactaattttgtactaaaa 381

                                         
Query: 73  ctagtataaagttgagat--acttattttg 100
            |||||||||||||||||  ||||||||||
Sbjct: 380 atagtataaagttgagatccacttattttg 351
to top
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
              sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
              (WM1.12) genes, complete cds; transposons Ophelia2,
              Angela3s, and XJ3, complete sequence; LRR protein WM1.3
              (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1,
              Jody, Angela, and XJ and Stowaway MITE, complete sequence;
              LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1)
              genes, complete cds; transposons XJ, XA, Angela, and Fred
              and WM1.11 gene, complete sequence; RPM1-like sequence and
              LRR protein WM1.10 (WM1.10) genes, complete cds; and
              transposon XJ, complete sequence
          Length = 198649

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 79     taaagttgagatacttattttgaga 103
              ||||||||||| |||||||||||||
Sbjct: 197322 taaagttgagacacttattttgaga 197346
to top
>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05,
             complete sequence
          Length = 163130

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    acactctccgtcccaaaataa 39
             |||||||||||||||||||||
Sbjct: 37862 acactctccgtcccaaaataa 37842
to top
>gb|AY210802.1| Danio rerio nuclear receptor coactivator (tif2) gene, complete cds
          Length = 90209

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 175   acatactaataaccatactaacaaa 199
             |||||||||||| ||||||||||||
Sbjct: 70070 acatactaataaacatactaacaaa 70046
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 17       atacactctccgtcccaaaataact 41
                |||||| ||||||||||||||||||
Sbjct: 29384626 atacaccctccgtcccaaaataact 29384650



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 18       tacactctccgtcccaaaataact 41
                |||| |||||||||||||||||||
Sbjct: 22917357 tacaatctccgtcccaaaataact 22917380
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 17       atacactctccgtcccaaaataact 41
                |||| ||||||||||||||||||||
Sbjct: 16519156 atactctctccgtcccaaaataact 16519132



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 24       ctccgtcccaaaataactgt 43
                ||||||||||||||||||||
Sbjct: 19650128 ctccgtcccaaaataactgt 19650147
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 19       acactctccgtcccaaaataa 39
                |||||||||||||||||||||
Sbjct: 22448455 acactctccgtcccaaaataa 22448435
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 18       tacactctccgtcccaaaata 38
                |||||||||||||||||||||
Sbjct: 21185825 tacactctccgtcccaaaata 21185805



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 16      tatacactctccgtcccaaaataa 39
               ||||||| ||||||||||||||||
Sbjct: 2222208 tatacaccctccgtcccaaaataa 2222231
to top
>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0583E12
          Length = 152449

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 17    atacactctccgtcccaaaataact 41
             |||| ||||||||||||||||||||
Sbjct: 15136 atactctctccgtcccaaaataact 15112
to top
>dbj|AP005656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0404G03
          Length = 135225

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 17     atacactctccgtcccaaaataact 41
              |||| ||||||||||||||||||||
Sbjct: 128474 atactctctccgtcccaaaataact 128450
to top
>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0038F20
          Length = 129595

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    tacactctccgtcccaaaata 38
             |||||||||||||||||||||
Sbjct: 92541 tacactctccgtcccaaaata 92521
to top
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 17    atacactctccgtcccaaaataact 41
             |||||| ||||||||||||||||||
Sbjct: 47548 atacaccctccgtcccaaaataact 47572
to top
>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24,
             complete sequence
          Length = 213091

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 175   acatactaataaccatactaacaaa 199
             |||||||||||| ||||||||||||
Sbjct: 56989 acatactaataaacatactaacaaa 56965
to top
>emb|AL669901.26| Mouse DNA sequence from clone RP23-35N5 on chromosome X, complete
              sequence
          Length = 226126

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 75     agtataaagttgagatacttatttt 99
              ||||||||||||| |||||||||||
Sbjct: 193856 agtataaagttgatatacttatttt 193832
to top
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 80      aaagttgagatacttattttgagagagt 107
               ||||||||||| ||| ||||||||||||
Sbjct: 1065825 aaagttgagattcttgttttgagagagt 1065852
to top
>ref|XM_632758.1| Dictyostelium discoideum hypothetical protein (DDB0186922), partial
            mRNA
          Length = 4422

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 126  cagaccatgctgtggttgataatt 149
            |||||||||| |||||||||||||
Sbjct: 2275 cagaccatgcagtggttgataatt 2252
to top
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus
              region
          Length = 160897

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 24     ctccgtcccaaaataactgtctca 47
              |||||||||||||||| |||||||
Sbjct: 115846 ctccgtcccaaaataaatgtctca 115869
to top
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08,
              complete sequence
          Length = 165440

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     ctctccgtcccaaaataact 41
              ||||||||||||||||||||
Sbjct: 105785 ctctccgtcccaaaataact 105766
to top
>gb|AY544779.1| Leccinum talamancae 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 28S ribosomal RNA gene, partial sequence
          Length = 653

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 137 gtggttgataattaaatgac 156
           ||||||||||||||||||||
Sbjct: 388 gtggttgataattaaatgac 369
to top
>gb|AC122316.3| Mus musculus BAC clone RP23-303G23 from 1, complete sequence
          Length = 171213

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    tattttgagagagtattttc 113
             ||||||||||||||||||||
Sbjct: 52939 tattttgagagagtattttc 52920
to top
>ref|XM_644990.1| Entamoeba histolytica HM-1:IMSS leucine rich repeat protein
           (248.t00012) partial mRNA
          Length = 4971

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 90  tacttattttgagagagtattttctaaa 117
           |||| ||||||||| |||||||||||||
Sbjct: 768 tactgattttgagaaagtattttctaaa 795
to top
>gb|AC115734.9| Mus musculus, clone RP23-466K3, complete sequence
          Length = 185209

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   attttctaaagttttataca 127
             ||||||||||||||||||||
Sbjct: 62359 attttctaaagttttataca 62378
to top
>emb|AL161454.10| Human DNA sequence from clone RP11-72B4 on chromosome 9 Contains the
             gene for a novel protein similar to putative repair and
             recombination helicase RAD26L (LOC56959), a parkinson
             disease 7 (PARK7) pseudogene, the 5' end of a novel gene
             and a CpG island, complete sequence
          Length = 144536

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tattttctaaagttttatac 126
             ||||||||||||||||||||
Sbjct: 65568 tattttctaaagttttatac 65587
to top
>gb|AC099727.13| Mus musculus chromosome 1, clone RP23-353O3, complete sequence
          Length = 222408

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    tattttgagagagtattttc 113
             ||||||||||||||||||||
Sbjct: 25830 tattttgagagagtattttc 25811
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 15      ttatacactctccgtcccaaaata 38
               |||||| |||||||||||||||||
Sbjct: 8018400 ttatactctctccgtcccaaaata 8018423
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 22       ctctccgtcccaaaataact 41
                ||||||||||||||||||||
Sbjct: 18526470 ctctccgtcccaaaataact 18526451
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 24       ctccgtcccaaaataactgt 43
                ||||||||||||||||||||
Sbjct: 28375449 ctccgtcccaaaataactgt 28375468
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 16       tatacactctccgtcccaaaataa 39
                ||||| ||||||||||||||||||
Sbjct: 36525745 tatactctctccgtcccaaaataa 36525768



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 24       ctccgtcccaaaataactgt 43
                ||||||||||||||||||||
Sbjct: 12719028 ctccgtcccaaaataactgt 12719047
to top
>dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0414E03
          Length = 139598

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    tatacactctccgtcccaaaataa 39
             ||||| ||||||||||||||||||
Sbjct: 39120 tatactctctccgtcccaaaataa 39143
to top
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 177    atactaataaccatactaacaaac 200
              ||||||||||||||| ||||||||
Sbjct: 287817 atactaataaccataataacaaac 287840
to top
>dbj|AP004794.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0506C10
          Length = 150549

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     ctccgtcccaaaataactgt 43
              ||||||||||||||||||||
Sbjct: 131860 ctccgtcccaaaataactgt 131879
to top
>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0001B21
          Length = 143722

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ctccgtcccaaaataactgt 43
             ||||||||||||||||||||
Sbjct: 34584 ctccgtcccaaaataactgt 34603
to top
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0554D10
          Length = 158723

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ctccgtcccaaaataactgt 43
             ||||||||||||||||||||
Sbjct: 86057 ctccgtcccaaaataactgt 86076
to top
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1019_E02
          Length = 121607

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 18     tacactctccgtcccaaaataact 41
              |||| |||||||||||||||||||
Sbjct: 110624 tacaatctccgtcccaaaataact 110647
to top
>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0044E16
          Length = 153296

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     ctccgtcccaaaataactgt 43
              ||||||||||||||||||||
Sbjct: 104255 ctccgtcccaaaataactgt 104274
to top
>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1123_E07
          Length = 113187

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 16   tatacactctccgtcccaaaataa 39
            ||||||| ||||||||||||||||
Sbjct: 9157 tatacaccctccgtcccaaaataa 9180
to top
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1679_B08
          Length = 142529

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 16     tatacactctccgtcccaaaataa 39
              ||||||| ||||||||||||||||
Sbjct: 136901 tatacaccctccgtcccaaaataa 136924
to top
>dbj|AK101891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070O08, full
            insert sequence
          Length = 4168

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 15   ttatacactctccgtcccaaaata 38
            |||||| |||||||||||||||||
Sbjct: 3606 ttatactctctccgtcccaaaata 3629
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 22       ctctccgtcccaaaataact 41
                ||||||||||||||||||||
Sbjct: 18685871 ctctccgtcccaaaataact 18685852
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 15      ttatacactctccgtcccaaaata 38
               |||||| |||||||||||||||||
Sbjct: 8018281 ttatactctctccgtcccaaaata 8018304
to top
>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 151117

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 15     ttatacactctccgtcccaaaata 38
              |||||| |||||||||||||||||
Sbjct: 125278 ttatactctctccgtcccaaaata 125255
to top
>emb|AL691424.7| Mouse DNA sequence from clone RP23-219K12 on chromosome X, complete
              sequence
          Length = 194520

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 180    ctaataaccatactaacaaaccaa 203
              ||||||| ||||||||||||||||
Sbjct: 150077 ctaataatcatactaacaaaccaa 150054
to top
>gb|AC159470.17| Mus musculus 10 BAC RP24-462C5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 175513

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    tttgagagagtattttctaa 116
             ||||||||||||||||||||
Sbjct: 98245 tttgagagagtattttctaa 98226
to top
>gb|AC167231.12| Mus musculus  BAC RP23-416P12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205781

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     tttgagagagtattttctaa 116
              ||||||||||||||||||||
Sbjct: 183886 tttgagagagtattttctaa 183867


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,641,429
Number of Sequences: 3902068
Number of extensions: 2641429
Number of successful extensions: 56837
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 55982
Number of HSP's gapped (non-prelim): 855
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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